RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 NOL6Q9H6R4 1146 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-203ENST00000594298 LUC7LQ9NQ29 371 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-203ENST00000594298 COL27A1Q8IZC6 1860 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 WASH4PA8MWX3 477 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 EEF2KO00418 725 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 MUSKO15146 869 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 YY2O15391 372 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 BUB1O43683 1085 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 IGSF6O95976 241 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 TSHRP16473 764 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 PEX5P50542 639 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 YBEYP58557 167 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 PPARDQ03181 441 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 C1orf61Q13536 156 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 FAXCQ5TGI0 409 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 CRTC1Q6UUV9 634 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 CLEC14AQ86T13 490 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 CCDC170Q8IYT3 715 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 HCAR2Q8TDS4 363 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 SNRNP25Q9BV90 132 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 CPEB1Q9BZB8 566 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 CLPBQ9H078 707 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 MBNL1Q9NR56 388 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 SPTLC3Q9NUV7 552 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 INTUQ9ULD6 942 aa17.7■□□□□ 0.42
SHKBP1-203ENST00000594298 TMEM110-MUSTN1A8MSY1 372 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 GOLGA6L6A8MZA4 724 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 ZIC2O95409 532 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 TIMP2P16035 220 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 CDC25BP30305 580 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 CYLC1P35663 651 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 HCAR3P49019 387 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 BLKP51451 505 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 PDX1P52945 283 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 RHOAP61586 193 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 TMEM52BQ4KMG9 183 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 LRRC73Q5JTD7 316 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 ESRP1Q6NXG1 681 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 LVRNQ6Q4G3 990 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 RHOT2Q8IXI1 618 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 SDR16C5Q8N3Y7 309 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 FSTL5Q8N475 847 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 ARL14Q8N4G2 192 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 ARL10Q8N8L6 244 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 WDR36Q8NI36 951 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 TTC9Q92623 222 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 CCDC3Q9BQI4 270 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 PACSIN1Q9BY11 444 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 ZWILCHQ9H900 591 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 GPATCH2LQ9NWQ4 482 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 PADI4Q9UM07 663 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 CHD5Q8TDI0 1954 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 KALRNO60229 2985 aa17.69■□□□□ 0.42
SHKBP1-203ENST00000594298 K7ENP7 123 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 NTN3O00634 580 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 ITIH2P19823 946 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 ARL4AP40617 200 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 SSR1P43307 286 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 HK3P52790 923 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 ELP6Q0PNE2 266 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 IRF4Q15306 451 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 SPA17Q15506 151 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 PARP15Q460N3 678 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 PPP6R3Q5H9R7 873 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 INO80CQ6PI98 192 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 TMTC1Q8IUR5 882 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 TEKT4Q8WW24 435 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 BTBD6Q96KE9 485 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 PEBP4Q96S96 227 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 KLC2Q9H0B6 622 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 IMPACTQ9P2X3 320 aa17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 TDRD6O60522 2096 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-203ENST00000594298 CCDC187A0A096LP49 1063 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 TSPAN11A1L157 253 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 H3BRJ5 948 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 PROSCO94903 275 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 IPO7O95373 1038 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 ITGA2BP08514 1039 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 ALPIP09923 528 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 ARHGAP25P42331 645 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 MAGEA1P43355 309 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 SERINC3Q13530 473 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 SPIDRQ14159 915 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 GRM3Q14832 879 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 LRRC14Q15048 493 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 AGERQ15109 404 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 ELOCQ15369 112 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 CA9Q16790 459 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 WSCD2Q2TBF2 565 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 RFX8Q6ZV50 586 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 ZNF354CQ86Y25 554 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 UMODL1-AS1Q8N2C9 162 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 SLC35G2Q8TBE7 412 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 SCG3Q8WXD2 468 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 HMCESQ96FZ2 354 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 LIN37Q96GY3 246 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 KCTD15Q96SI1 283 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 WRAP53Q9BUR4 548 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 LHX3Q9UBR4 397 aa17.67■□□□□ 0.42
SHKBP1-203ENST00000594298 HELZ2Q9BYK8 2649 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms