RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CARD6Q9BX69 1037 aa15.04■□□□□ -0
NUP54-213ENST00000513352 TRIM31Q9BZY9 425 aa15.04■□□□□ -0
NUP54-213ENST00000513352 PREBQ9HCU5 417 aa15.04■□□□□ -0
NUP54-213ENST00000513352 B4GALT6Q9UBX8 382 aa15.04■□□□□ -0
NUP54-213ENST00000513352 RPL26L1Q9UNX3 145 aaKnown RBP15.04■□□□□ -0
NUP54-213ENST00000513352 R4GN57 208 aa15.04■□□□□ -0
NUP54-213ENST00000513352 TRPM6Q9BX84 2022 aa15.04■□□□□ -0
NUP54-213ENST00000513352 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.03■□□□□ -0
NUP54-213ENST00000513352 CAPN8A6NHC0 703 aa15.03■□□□□ -0
NUP54-213ENST00000513352 MEI4A8MW99 385 aa15.03■□□□□ -0
NUP54-213ENST00000513352 RIOK3O14730 519 aaKnown RBP15.03■□□□□ -0
NUP54-213ENST00000513352 RAD51CO43502 376 aa15.03■□□□□ -0
NUP54-213ENST00000513352 HRO43593 1189 aa15.03■□□□□ -0
NUP54-213ENST00000513352 AP1G1O43747 822 aa15.03■□□□□ -0
NUP54-213ENST00000513352 RNGTTO60942 597 aaKnown RBP15.03■□□□□ -0
NUP54-213ENST00000513352 AP2A1O95782 977 aa15.03■□□□□ -0
NUP54-213ENST00000513352 HLA-DPA1P20036 260 aa15.03■□□□□ -0
NUP54-213ENST00000513352 MAT2AP31153 395 aaKnown RBP15.03■□□□□ -0
NUP54-213ENST00000513352 VIPR1P32241 457 aa15.03■□□□□ -0
NUP54-213ENST00000513352 CNR2P34972 360 aa15.03■□□□□ -0
NUP54-213ENST00000513352 MMP12P39900 470 aa15.03■□□□□ -0
NUP54-213ENST00000513352 ARHGEF7Q14155 803 aa15.03■□□□□ -0
NUP54-213ENST00000513352 SLC1A5Q15758 541 aa15.03■□□□□ -0
NUP54-213ENST00000513352 SIRPB2Q5JXA9 342 aa15.03■□□□□ -0
NUP54-213ENST00000513352 C8orf74Q6P047 294 aa15.03■□□□□ -0
NUP54-213ENST00000513352 ARMCX6Q7L4S7 300 aa15.03■□□□□ -0
NUP54-213ENST00000513352 LPCAT2Q7L5N7 544 aa15.03■□□□□ -0
NUP54-213ENST00000513352 C11orf74Q86VG3 221 aa15.03■□□□□ -0
NUP54-213ENST00000513352 TMEFF1Q8IYR6 380 aa15.03■□□□□ -0
NUP54-213ENST00000513352 DNAAF3Q8N9W5 541 aa15.03■□□□□ -0
NUP54-213ENST00000513352 NELL1Q92832 810 aa15.03■□□□□ -0
NUP54-213ENST00000513352 KLK6Q92876 244 aa15.03■□□□□ -0
NUP54-213ENST00000513352 KDM4CQ9H3R0 1056 aa15.03■□□□□ -0
NUP54-213ENST00000513352 C6orf106Q9H6K1 298 aaPredicted RBP15.03■□□□□ -0
NUP54-213ENST00000513352 PIH1D1Q9NWS0 290 aaKnown RBP15.03■□□□□ -0
NUP54-213ENST00000513352 A0A0J9YYE9 177 aa15.02■□□□□ -0
NUP54-213ENST00000513352 A0A0U1RQS6 177 aa15.02■□□□□ -0
NUP54-213ENST00000513352 LOC285095A0A1B0GVY8 99 aa15.02■□□□□ -0
NUP54-213ENST00000513352 A0A1W2PQU0 124 aa15.02■□□□□ -0
NUP54-213ENST00000513352 FAM187AA6NFU0 413 aa15.02■□□□□ -0
NUP54-213ENST00000513352 NPIPB15A6NHN6 443 aaPredicted RBP15.02■□□□□ -0
NUP54-213ENST00000513352 GOLGA8CPA6NN73 597 aa15.02■□□□□ -0
NUP54-213ENST00000513352 ERI2A8K979 691 aaKnown RBP15.02■□□□□ -0
NUP54-213ENST00000513352 ANKRD66B4E2M5 251 aa15.02■□□□□ -0
NUP54-213ENST00000513352 AREL1O15033 823 aa15.02■□□□□ -0
NUP54-213ENST00000513352 SPINT1O43278 529 aa15.02■□□□□ -0
NUP54-213ENST00000513352 TSPAN6O43657 245 aa15.02■□□□□ -0
NUP54-213ENST00000513352 TRBC1P01850 177 aa15.02■□□□□ -0
NUP54-213ENST00000513352 FGF1P05230 155 aa15.02■□□□□ -0
NUP54-213ENST00000513352 ELFN1P0C7U0 828 aa15.02■□□□□ -0
NUP54-213ENST00000513352 ADRA1AP35348 466 aa15.02■□□□□ -0
NUP54-213ENST00000513352 HNF1BP35680 557 aa15.02■□□□□ -0
NUP54-213ENST00000513352 DHPSP49366 369 aaPredicted RBP15.02■□□□□ -0
NUP54-213ENST00000513352 PTPN5P54829 565 aa15.02■□□□□ -0
NUP54-213ENST00000513352 PPP2CBP62714 309 aa15.02■□□□□ -0
NUP54-213ENST00000513352 PPP2CAP67775 309 aa15.02■□□□□ -0
NUP54-213ENST00000513352 SIM2Q14190 667 aaPredicted RBP15.02■□□□□ -0
NUP54-213ENST00000513352 ELF2Q15723 593 aa15.02■□□□□ -0
NUP54-213ENST00000513352 IZUMO3Q5VZ72 239 aa15.02■□□□□ -0
NUP54-213ENST00000513352 KIAA0895LQ68EN5 471 aa15.02■□□□□ -0
NUP54-213ENST00000513352 KCTD11Q693B1 232 aa15.02■□□□□ -0
NUP54-213ENST00000513352 DPPA4Q7L190 304 aa15.02■□□□□ -0
NUP54-213ENST00000513352 LINC00523Q86TU6 105 aa15.02■□□□□ -0
NUP54-213ENST00000513352 ZBTB44Q8NCP5 570 aa15.02■□□□□ -0
NUP54-213ENST00000513352 BLOC1S5Q8TDH9 187 aa15.02■□□□□ -0
NUP54-213ENST00000513352 ATOH1Q92858 354 aaPredicted RBP15.02■□□□□ -0
NUP54-213ENST00000513352 FAM131CQ96AQ9 280 aa15.02■□□□□ -0
NUP54-213ENST00000513352 SCRN2Q96FV2 425 aa15.02■□□□□ -0
NUP54-213ENST00000513352 HSPA12BQ96MM6 686 aa15.02■□□□□ -0
NUP54-213ENST00000513352 HCN4Q9Y3Q4 1203 aa15.02■□□□□ -0
NUP54-213ENST00000513352 NEU2Q9Y3R4 380 aa15.02■□□□□ -0
NUP54-213ENST00000513352 SDK1Q7Z5N4 2213 aa15.02□□□□□ -0.01
NUP54-213ENST00000513352 DOCK9Q9BZ29 2069 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 LRRK1Q38SD2 2015 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 FANCMQ8IYD8 2048 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.01□□□□□ -0.01
NUP54-213ENST00000513352 C1orf232A0A0U1RR37 186 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 IGLON5A6NGN9 336 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 EFCAB8A8MWE9 144 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 LZTS3O60299 673 aaPredicted RBP15.01□□□□□ -0.01
NUP54-213ENST00000513352 MMP20O60882 483 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 EPOP01588 193 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 ATXN1LP0C7T5 689 aaKnown RBP15.01□□□□□ -0.01
NUP54-213ENST00000513352 LIG3P49916 1009 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 RPS21P63220 83 aaKnown RBP15.01□□□□□ -0.01
NUP54-213ENST00000513352 TCF15Q12870 199 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 SGCGQ13326 291 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 SEPT6Q14141 434 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 ACOX1Q15067 660 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 LPAL2Q16609 132 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 TMEM52BQ4KMG9 183 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 SEL1L3Q68CR1 1132 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 KIAA1161Q6NSJ0 714 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 TSPAN33Q86UF1 283 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 HORMAD1Q86X24 394 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 OR52K1Q8NGK4 314 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 GPR63Q9BZJ6 419 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 DPH5Q9H2P9 285 aa15.01□□□□□ -0.01
NUP54-213ENST00000513352 EIF2B3Q9NR50 452 aaKnown RBP15.01□□□□□ -0.01
NUP54-213ENST00000513352 RAB23Q9ULC3 237 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms