RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 CATSPERBQ9H7T0 1116 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 FGF22Q9HCT0 170 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 PISDQ9UG56 409 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 APPL1Q9UKG1 709 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 SIK3Q9Y2K2 1263 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 ATP8A1Q9Y2Q0 1164 aa13.88□□□□□ -0.19
CXCL12-202ENST00000374426 TMEM202A6NGA9 273 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 NVLO15381 856 aaKnown RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 FGF10O15520 208 aaPredicted RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 SLC28A2O43868 658 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 PRAMEF11O60813 436 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 TNFP01375 233 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 JMJD7P0C870 316 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 ITIH1P19827 911 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 ZFP36L1Q07352 338 aaKnown RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 RALGDSQ12967 914 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 LINC00303Q3SY05 128 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 CT47A1Q5JQC4 288 aaPredicted RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 PPP1R15BQ5SWA1 713 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 CERCAMQ5T4B2 595 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 DNAJC24Q6P3W2 148 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 OGFOD3Q6PK18 319 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 Q8N9G6 341 aaPredicted RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 OR56A4Q8NGH8 313 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 ATL2Q8NHH9 583 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 FUBP1Q96AE4 644 aaKnown RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 CELF6Q96J87 481 aaKnown RBP13.87□□□□□ -0.19
CXCL12-202ENST00000374426 MCEEQ96PE7 176 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 TUBGCP5Q96RT8 1024 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 CNPY3Q9BT09 278 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 NUP62CLQ9H1M0 184 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 LOXL2Q9Y4K0 774 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 GTF3C3Q9Y5Q9 886 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 SCN8AQ9UQD0 1980 aa13.87□□□□□ -0.19
CXCL12-202ENST00000374426 CFAP69A5D8W1 941 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 CYSRT1A8MQ03 144 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 AGRPO00253 132 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 RECQL5O94762 991 aaPredicted RBP13.86□□□□□ -0.19
CXCL12-202ENST00000374426 LIPCP11150 499 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 GLB1P16278 677 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 NDST2P52849 883 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 AIF1P55008 147 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 KIAA1024LP59773 190 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 CFAP58Q5T655 872 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 TMPRSS9Q7Z410 1059 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 SPRED1Q7Z699 444 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 TAF8Q7Z7C8 310 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 TSEN2Q8NCE0 465 aaKnown RBP13.86□□□□□ -0.19
CXCL12-202ENST00000374426 FAM46DQ8NEK8 389 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 ENOX1Q8TC92 643 aaKnown RBP13.86□□□□□ -0.19
CXCL12-202ENST00000374426 SGF29Q96ES7 293 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 TMEM168Q9H0V1 697 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 MRPL40Q9NQ50 206 aaKnown RBP13.86□□□□□ -0.19
CXCL12-202ENST00000374426 RNF215Q9Y6U7 377 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 ANKRD36A6QL64 1941 aa13.86□□□□□ -0.19
CXCL12-202ENST00000374426 ARHGEF17Q96PE2 2063 aaPredicted RBP13.86□□□□□ -0.19
CXCL12-202ENST00000374426 PRAMEF33A0A0G2JMD5 474 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 ANKRD62A6NC57 917 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 CACNB4O00305 520 aaPredicted RBP13.85□□□□□ -0.19
CXCL12-202ENST00000374426 PRAMEF10O60809 474 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 WISP1O95388 367 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 PNLIPP16233 465 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 GM2AP17900 193 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SERPINA4P29622 427 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 TRIM23P36406 574 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 ETV5P41161 510 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 CSNK1DP48730 415 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 PAPOLAP51003 745 aaKnown RBP13.85□□□□□ -0.19
CXCL12-202ENST00000374426 TPI1P60174 286 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 OGDHQ02218 1023 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 KCNC4Q03721 635 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 NFATC3Q12968 1075 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 HLTFQ14527 1009 aaKnown RBP eCLIP13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SYCP1Q15431 976 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 C14orf28Q4W4Y0 310 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 FKBP15Q5T1M5 1219 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 LIPIQ6XZB0 460 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 USP53Q70EK8 1073 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 PRICKLE2Q7Z3G6 844 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SRLQ86TD4 932 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SLITRK4Q8IW52 837 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 PELI3Q8N2H9 469 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 CCL4L1Q8NHW4 92 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 EXTL1Q92935 676 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 ECHDC3Q96DC8 303 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 LGR4Q9BXB1 951 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SLC39A8Q9C0K1 460 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 ATP13A3Q9H7F0 1226 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 SEPT11Q9NVA2 429 aaKnown RBP13.85□□□□□ -0.19
CXCL12-202ENST00000374426 GPATCH2LQ9NWQ4 482 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 FOXJ2Q9P0K8 574 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 LRIT1Q9P2V4 623 aa13.85□□□□□ -0.19
CXCL12-202ENST00000374426 B4DGG1 531 aa13.84□□□□□ -0.19
CXCL12-202ENST00000374426 TNFRSF10CO14798 259 aa13.84□□□□□ -0.19
CXCL12-202ENST00000374426 NUDT21O43809 227 aaKnown RBP13.84□□□□□ -0.19
CXCL12-202ENST00000374426 PALMO75781 387 aa13.84□□□□□ -0.19
CXCL12-202ENST00000374426 ITGB2P05107 769 aa13.84□□□□□ -0.19
CXCL12-202ENST00000374426 HOXC4P09017 264 aaPredicted RBP13.84□□□□□ -0.19
CXCL12-202ENST00000374426 ELFN1P0C7U0 828 aa13.84□□□□□ -0.19
CXCL12-202ENST00000374426 HTR7P34969 479 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms