RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SYVN1Q86TM6 617 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 SNX33Q8WV41 574 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 RNPEPL1Q9HAU8 725 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.99□□□□□ -0.171e-7■■■□□ 16
CCDC88A-201ENST00000263630 PAPSS2O95340 614 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 RGS19P49795 217 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 DRG2P55039 364 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 LLGL2Q6P1M3 1020 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SPOCD1Q6ZMY3 1216 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SDR16C5Q8N3Y7 309 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 HTR3CQ8WXA8 447 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 MUC13Q9H3R2 512 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF3P17036 446 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ADAM17P78536 824 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ALG10BQ5I7T1 473 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 GLS2Q9UI32 602 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 RPH3AQ9Y2J0 694 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 KCNQ3O43525 872 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 CRY2Q49AN0 593 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 PTPRHQ9HD43 1115 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 CD2P06729 351 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 S100PP25815 95 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SNRPD1P62314 119 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 CRTC3Q6UUV7 619 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SUSD6Q92537 303 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 MINPP1Q9UNW1 487 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF157P51786 506 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 OVOS1Q6IE37 1185 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SPESP1Q6UW49 350 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 TMC7Q7Z402 723 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 KATNAL2Q8IYT4 538 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 TP53INP1Q96A56 240 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 SMURF1Q9HCE7 757 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 PAK6Q9NQU5 681 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ANXA2P2A6NMY6 339 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 FGBP02675 491 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ANXA2P07355 339 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 PON1P27169 355 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 BAATQ14032 418 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 APTXQ7Z2E3 356 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 PANX1Q96RD7 426 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 AP2A2O94973 939 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 NADKO95544 446 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 MMP13P45452 471 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 CHERPQ8IWX8 916 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ART5Q96L15 291 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 PCDH12Q9NPG4 1184 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 RNF181Q9P0P0 153 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 MAU2Q9Y6X3 613 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 TEX13CA0A0J9YWL9 993 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 RHPN2P1A8MT19 583 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ZBTB22O15209 634 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 KDM4BO94953 1096 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 MPZL3Q6UWV2 235 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 ATG4AQ8WYN0 398 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 TBCBQ99426 244 aa13.98□□□□□ -0.17
CCDC88A-201ENST00000263630 BTBD19C9JJ37 291 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 RIPK2O43353 540 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 FSBPO95073 299 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 OTCP00480 354 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 IFNA21P01568 189 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 OR3A3P47888 321 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 OR3A2P47893 321 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 MANFP55145 182 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 RFXANKO14593 260 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 AP5Z1O43299 807 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CLPXO76031 633 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 TTMPQ5BVD1 217 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF709Q8N972 641 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 IRX2Q9BZI1 471 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 KLRC2P26717 231 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 RASAL3Q86YV0 1011 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PCSK9Q8NBP7 692 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 POC1BQ8TC44 478 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 FGF10O15520 208 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PPM1BO75688 479 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CTSKP43235 329 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 C1QBPQ07021 282 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PUS10Q3MIT2 529 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ADNP2Q6IQ32 1131 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ADGRG6Q86SQ4 1221 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 WDR49Q8IV35 697 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CENPSQ8N2Z9 138 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ING5Q8WYH8 240 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CDHR5Q9HBB8 845 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ATP13A1Q9HD20 1204 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 IL1RAPQ9NPH3 570 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 AGPAT3Q9NRZ7 376 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 HMGXB4Q9UGU5 601 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 IFT52Q9Y366 437 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 FXR1P51114 621 aaKnown RBP eCLIP13.97□□□□□ -0.173e-8■■■■□ 23.7
CCDC88A-201ENST00000263630 RAB27AP51159 221 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 NAA30Q147X3 362 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 TBC1D21Q8IYX1 336 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 POU5F2Q8N7G0 328 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 NELFAQ9H3P2 528 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 GULP1Q9UBP9 304 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 ASXL2Q76L83 1435 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 CAMTA2O94983 1202 aa13.97□□□□□ -0.17
CCDC88A-201ENST00000263630 PGAM2P15259 253 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms