RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 LINC01548A6NM66 108 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 F8W810 466 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 KIR2DS3K7RE56 304 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 HS6ST1O60243 411 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 RAMP2O60895 175 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 TPPPO94811 219 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 CSPG5O95196 566 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 ZNF182P17025 639 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 EPHB2P29323 1055 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 PPP5CP53041 499 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 PROK1P58294 105 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 IKQ13123 557 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 PSMD6Q15008 389 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 SHBQ15464 509 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 SLC9C1Q4G0N8 1177 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 ESCO2Q56NI9 601 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 C1QTNF12Q5T7M4 302 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 FBXO46Q6PJ61 603 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 ZNF782Q6ZMW2 699 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 CFAP77Q6ZQR2 320 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 ANKRD23Q86SG2 305 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 KBTBD6Q86V97 674 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 CCDC13Q8IYE1 715 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 PRPF31Q8WWY3 499 aaKnown RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 APOL6Q9BWW8 343 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 KLHL4Q9C0H6 718 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 MAGEE1Q9HCI5 957 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 LTB4R2Q9NPC1 389 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 CCDC177Q9NQR7 707 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 PADI1Q9ULC6 663 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 HS3ST3A1Q9Y663 406 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 GLOD5A6NK44 160 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 HSPB6O14558 160 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 CLDN7O95471 211 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 SRPRAP08240 638 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 ETFAP13804 333 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 AGAP20933 346 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 TNFSF8P32971 234 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 PRPF4BQ13523 1007 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 CAPSQ13938 189 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 PLEKHO1Q53GL0 409 aaPredicted RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 PRAMEF19Q5SWL8 479 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 ZNF66Q6ZN08 573 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 SEPT14Q6ZU15 432 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 DENND5BQ6ZUT9 1274 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 MRGPRGQ86SM5 289 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 ZDHHC23Q8IYP9 409 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 HORMAD2Q8N7B1 307 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 SGCDQ92629 289 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 TMEM68Q96MH6 324 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 OR2A14Q96R47 310 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 IFIH1Q9BYX4 1025 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 LHPPQ9H008 270 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 OR10A4Q9H209 315 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 DDX4Q9NQI0 724 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 TMEM45AQ9NWC5 275 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 WSB2Q9NYS7 404 aaPredicted RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 CPSF2Q9P2I0 782 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 AGO2Q9UKV8 859 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 ZHX1Q9UKY1 873 aaPredicted RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 NOL7Q9UMY1 257 aaKnown RBP7.61□□□□□ -1.19
NUP54-215ENST00000514313 INSL6Q9Y581 213 aa7.61□□□□□ -1.19
NUP54-215ENST00000514313 WDR17Q8IZU2 1322 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 IGLV2-14P01704 120 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 TACR2P21452 398 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 PON1P27169 355 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 HOXA13P31271 388 aaPredicted RBP7.6□□□□□ -1.19
NUP54-215ENST00000514313 TERF1P54274 439 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 RRP1P56182 461 aaKnown RBP7.6□□□□□ -1.19
NUP54-215ENST00000514313 TNFAIP1Q13829 316 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 CDONQ4KMG0 1287 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 SGO1Q5FBB7 561 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 ASPHD1Q5U4P2 390 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 KIAA1614Q5VZ46 1190 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 PMS2CLQ68D20 193 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 HMBOX1Q6NT76 420 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 ADGRA1Q86SQ6 560 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 HAPLN4Q86UW8 402 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 DNAAF5Q86Y56 855 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 DENND6AQ8IWF6 608 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 PARP16Q8N5Y8 322 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 HJURPQ8NCD3 748 aaPredicted RBP7.6□□□□□ -1.19
NUP54-215ENST00000514313 HUS1BQ8NHY5 278 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 SNAPC3Q92966 411 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 FBXL8Q96CD0 374 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 GCNAQ96QF7 691 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 TMEM47Q9BQJ4 181 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 CDT1Q9H211 546 aa7.6□□□□□ -1.19
NUP54-215ENST00000514313 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.6□□□□□ -1.19
NUP54-215ENST00000514313 MARCH4Q9P2E8 410 aaPredicted RBP7.6□□□□□ -1.19
NUP54-215ENST00000514313 SEC63Q9UGP8 760 aaKnown RBP7.6□□□□□ -1.19
NUP54-215ENST00000514313 TRBV5-3A0A0A0MS03 114 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 RPN1P04843 607 aaKnown RBP7.59□□□□□ -1.19
NUP54-215ENST00000514313 C6P13671 934 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 TMEM11P17152 192 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 DCTDP32321 178 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 UBXN2AP68543 259 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 ZBED6P86452 979 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 ROR1Q01973 937 aa7.59□□□□□ -1.19
NUP54-215ENST00000514313 ACSM2AQ08AH3 577 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms