RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ZNF112Q9UJU3 913 aa19.41■□□□□ 0.7
USP48-201ENST00000308271 METTL18O95568 372 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 GUCA1CO95843 209 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 PRKCHP24723 683 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 GSSP48637 474 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 GAD2Q05329 585 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 PDCD4Q53EL6 469 aaKnown RBP19.4■□□□□ 0.7
USP48-201ENST00000308271 RAB2BQ8WUD1 216 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 ZBED2Q9BTP6 218 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 NMRK2Q9NPI5 230 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 MYH7BA7E2Y1 1941 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 LINC00032P0C843 101 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 ZNF286BP0CG31 522 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 ADRA1BP35368 520 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 GTF2A2P52657 109 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 TBX4P57082 545 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 ZNF549Q6P9A3 640 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 NECAB2Q7Z6G3 386 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 AKAP14Q86UN6 197 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 POLR1EQ9GZS1 481 aaKnown RBP19.4■□□□□ 0.7
USP48-201ENST00000308271 EPB41L4BQ9H329 900 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 COL20A1Q9P218 1284 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 CDV3Q9UKY7 258 aaKnown RBP19.4■□□□□ 0.7
USP48-201ENST00000308271 COL1A1P02452 1464 aaPredicted RBP19.4■□□□□ 0.7
USP48-201ENST00000308271 G3V2T6 193 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 PDE9AO76083 593 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 ATP6V0D1P61421 351 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 TRIQKQ629K1 86 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 SPATA19Q7Z5L4 167 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 TMEM86AQ8N2M4 240 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 PROX1Q92786 737 aa19.4■□□□□ 0.7
USP48-201ENST00000308271 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.4■□□□□ 0.7
USP48-201ENST00000308271 SLC12A8A0AV02 714 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 C17orf102A2RUQ5 167 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 PENKP01210 267 aaPredicted RBP19.39■□□□□ 0.7
USP48-201ENST00000308271 ZNF7P17097 686 aaPredicted RBP19.39■□□□□ 0.7
USP48-201ENST00000308271 IL12AP29459 219 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 CAPGP40121 348 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 ABL2P42684 1182 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 PIK3CGP48736 1102 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 CELF3Q5SZQ8 465 aaKnown RBP19.39■□□□□ 0.7
USP48-201ENST00000308271 C1orf127Q8N9H9 656 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 PTCD2Q8WV60 388 aaKnown RBP19.39■□□□□ 0.7
USP48-201ENST00000308271 ARHGEF4Q9NR80 690 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 EHD3Q9NZN3 535 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 ZMYM5Q9UJ78 669 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 ADAM30Q9UKF2 790 aa19.39■□□□□ 0.7
USP48-201ENST00000308271 SNPHO15079 494 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 DBTP11182 482 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 NFE2Q16621 373 aaPredicted RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 HIST2H2ACQ16777 129 aaPredicted RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 PAGE2BQ5JRK9 111 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 HIST2H2AA3Q6FI13 130 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 TXNDC11Q6PKC3 985 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 TIFABQ6ZNK6 161 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 GPRIN3Q6ZVF9 776 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 KCTD8Q6ZWB6 473 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 ZNF567Q8N184 647 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 FSTL5Q8N475 847 aaPredicted RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 MCFD2Q8NI22 146 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 RERGLQ9H628 205 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 LMCD1Q9NZU5 365 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 FARP1Q9Y4F1 1045 aaPredicted RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 CFHP08603 1231 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 THRBP10828 461 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 TSNQ15631 228 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 PACRGLQ8N7B6 248 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 LPCAT1Q8NF37 534 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 MYDGFQ969H8 173 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 NIFKQ9BYG3 293 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 SPON1Q9HCB6 807 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 TDRKHQ9Y2W6 561 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 GMEB1Q9Y692 573 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 AREL1O15033 823 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 FAM189A1O60320 539 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 CDK9P50750 372 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 GLYATQ6IB77 296 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 GLT6D1Q7Z4J2 308 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 HS6ST3Q8IZP7 471 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 C18orf25Q96B23 403 aaPredicted RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 FANCEQ9HB96 536 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 LSM7Q9UK45 103 aaKnown RBP19.39■□□□□ 0.69
USP48-201ENST00000308271 TRIM17Q9Y577 477 aa19.39■□□□□ 0.69
USP48-201ENST00000308271 FAM25AB3EWG3 89 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 FAM25CB3EWG5 89 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 FAM25GB3EWG6 89 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 TUBA4AP68366 448 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 TOP1MTQ969P6 601 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 OMA1Q96E52 524 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 TPD52L3Q96J77 140 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 OPTCQ9UBM4 332 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 RPS6KA6Q9UK32 745 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 KCPQ6ZWJ8 1503 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 CD86P42081 329 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 HALP42357 657 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 CPT1AP50416 773 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 LSAMPQ13449 338 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 PMF1Q6P1K2 205 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 DEFB132Q7Z7B7 95 aa19.38■□□□□ 0.69
USP48-201ENST00000308271 CYP4Z1Q86W10 505 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms