RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-231ENST00000640501 TRIM35Q9UPQ4 493 aa10.67□□□□□ -0.7
PNKP-231ENST00000640501 ARHGEF10O15013 1369 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 BCAR3O75815 825 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 AMPHP49418 695 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 RRS1Q15050 365 aaKnown RBP10.66□□□□□ -0.7
PNKP-231ENST00000640501 PHF8Q9UPP1 1060 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 PIK3C2AO00443 1686 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 KIF1AQ12756 1690 aa10.66□□□□□ -0.7
PNKP-231ENST00000640501 RTL1A6NKG5 1358 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 HMOX1P09601 288 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 NLRP6P59044 892 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 CLUAP1Q96AJ1 413 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 SMC4Q9NTJ3 1288 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 DMRT2Q9Y5R5 561 aa10.65□□□□□ -0.7
PNKP-231ENST00000640501 RGPD1P0DJD0 1748 aa10.64□□□□□ -0.71
PNKP-231ENST00000640501 EXOSC9Q06265 439 aaKnown RBP10.64□□□□□ -0.71
PNKP-231ENST00000640501 C20orf194Q5TEA3 1177 aa10.64□□□□□ -0.71
PNKP-231ENST00000640501 ABTB2Q8N961 1025 aa10.64□□□□□ -0.71
PNKP-231ENST00000640501 KCNH5Q8NCM2 988 aa10.64□□□□□ -0.71
PNKP-231ENST00000640501 ZRANB1Q9UGI0 708 aa10.64□□□□□ -0.71
PNKP-231ENST00000640501 DLG5Q8TDM6 1919 aa10.63□□□□□ -0.71
PNKP-231ENST00000640501 PAK3O75914 559 aaPredicted RBP10.63□□□□□ -0.71
PNKP-231ENST00000640501 ANP32AP39687 249 aaKnown RBP10.63□□□□□ -0.71
PNKP-231ENST00000640501 PSME1Q06323 249 aa10.63□□□□□ -0.71
PNKP-231ENST00000640501 EIF4A2Q14240 407 aaKnown RBP10.63□□□□□ -0.71
PNKP-231ENST00000640501 DZIP1LQ8IYY4 767 aaKnown RBP10.63□□□□□ -0.71
PNKP-231ENST00000640501 DDX19BQ9UMR2 479 aa10.63□□□□□ -0.71
PNKP-231ENST00000640501 NCOA3Q9Y6Q9 1424 aa10.63□□□□□ -0.71
PNKP-231ENST00000640501 SULT6B1Q6IMI4 303 aa10.62□□□□□ -0.71
PNKP-231ENST00000640501 GAS2L2Q8NHY3 880 aa10.62□□□□□ -0.71
PNKP-231ENST00000640501 RTF1Q92541 710 aaKnown RBP10.62□□□□□ -0.71
PNKP-231ENST00000640501 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
PNKP-231ENST00000640501 CFAP44Q96MT7 982 aa10.62□□□□□ -0.71
PNKP-231ENST00000640501 RWDD1Q9H446 243 aaPredicted RBP10.62□□□□□ -0.71
PNKP-231ENST00000640501 PEAK1Q9H792 1746 aa10.61□□□□□ -0.71
PNKP-231ENST00000640501 MAP3K19Q56UN5 1328 aa10.61□□□□□ -0.71
PNKP-231ENST00000640501 KDM2BQ8NHM5 1336 aa10.61□□□□□ -0.71
PNKP-231ENST00000640501 HTATSF1O43719 755 aaKnown RBP10.61□□□□□ -0.71
PNKP-231ENST00000640501 BRPF1P55201 1214 aaPredicted RBP10.61□□□□□ -0.71
PNKP-231ENST00000640501 ESCO1Q5FWF5 840 aa10.61□□□□□ -0.71
PNKP-231ENST00000640501 CHMP4AQ9BY43 222 aa10.61□□□□□ -0.71
PNKP-231ENST00000640501 LAS1LQ9Y4W2 734 aaKnown RBP10.61□□□□□ -0.71
PNKP-231ENST00000640501 DCCP43146 1447 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 FBLN1P23142 703 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 MVPQ14764 893 aaKnown RBP10.6□□□□□ -0.71
PNKP-231ENST00000640501 ATF7IPQ6VMQ6 1270 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 ERICH6Q7L0X2 663 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 PROSER2Q86WR7 435 aaPredicted RBP10.6□□□□□ -0.71
PNKP-231ENST00000640501 ARHGAP45Q92619 1136 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 PHACTR3Q96KR7 559 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 COG6Q9Y2V7 657 aa10.6□□□□□ -0.71
PNKP-231ENST00000640501 PHRF1Q9P1Y6 1649 aaKnown RBP10.59□□□□□ -0.71
PNKP-231ENST00000640501 HSP90AB2PQ58FF8 381 aa10.59□□□□□ -0.71
PNKP-231ENST00000640501 C19orf44Q9H6X5 657 aa10.59□□□□□ -0.71
PNKP-231ENST00000640501 KDRP35968 1356 aa10.59□□□□□ -0.71
PNKP-231ENST00000640501 LTN1O94822 1766 aa10.59□□□□□ -0.71
PNKP-231ENST00000640501 SOX12O15370 315 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 ZNF853P0CG23 659 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 ATF3P18847 181 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 PANK1Q8TE04 598 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 SSH1Q8WYL5 1049 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 API5Q9BZZ5 524 aaKnown RBP10.58□□□□□ -0.72
PNKP-231ENST00000640501 SOS1Q07889 1333 aaPredicted RBP10.58□□□□□ -0.72
PNKP-231ENST00000640501 IGSF1Q8N6C5 1336 aa10.58□□□□□ -0.72
PNKP-231ENST00000640501 KIAA0232Q92628 1395 aa10.57□□□□□ -0.72
PNKP-231ENST00000640501 HOXC9P31274 260 aa10.57□□□□□ -0.72
PNKP-231ENST00000640501 TWISTNBQ3B726 338 aaPredicted RBP10.57□□□□□ -0.72
PNKP-231ENST00000640501 BCL2L13Q9BXK5 485 aa10.57□□□□□ -0.72
PNKP-231ENST00000640501 MARF1Q9Y4F3 1742 aaKnown RBP10.57□□□□□ -0.72
PNKP-231ENST00000640501 ITPRIPQ8IWB1 547 aa10.56□□□□□ -0.72
PNKP-231ENST00000640501 MBIPQ9NS73 344 aa10.56□□□□□ -0.72
PNKP-231ENST00000640501 BABAM1Q9NWV8 329 aa10.56□□□□□ -0.72
PNKP-231ENST00000640501 NOB1Q9ULX3 412 aaKnown RBP10.56□□□□□ -0.72
PNKP-231ENST00000640501 TRIM27P14373 513 aa10.55□□□□□ -0.72
PNKP-231ENST00000640501 PDE4AP27815 886 aa10.55□□□□□ -0.72
PNKP-231ENST00000640501 MYT1Q01538 1121 aa10.55□□□□□ -0.72
PNKP-231ENST00000640501 IP6K1Q92551 441 aa10.55□□□□□ -0.72
PNKP-231ENST00000640501 GNAT3A8MTJ3 354 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 VAMP4O75379 141 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 FAM161AQ3B820 660 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 CADPS2Q86UW7 1296 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 AEBP1Q8IUX7 1158 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 BACH2Q9BYV9 841 aa10.54□□□□□ -0.72
PNKP-231ENST00000640501 SLIT3O75094 1523 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 NFAT5O94916 1531 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 MSH6P52701 1360 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 MST1RQ04912 1400 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 CHL1O00533 1208 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 DDRGK1Q96HY6 314 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 EYA1Q99502 592 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 C1orf167Q5SNV9 1468 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 PTPRCP08575 1304 aa10.53□□□□□ -0.72
PNKP-231ENST00000640501 MAP3K5Q99683 1374 aa10.52□□□□□ -0.72
PNKP-231ENST00000640501 HDAC1Q13547 482 aaPredicted RBP10.52□□□□□ -0.73
PNKP-231ENST00000640501 AMOTQ4VCS5 1084 aa10.52□□□□□ -0.73
PNKP-231ENST00000640501 NUTM2GQ5VZR2 741 aa10.52□□□□□ -0.73
PNKP-231ENST00000640501 MRPL50Q8N5N7 158 aaKnown RBP10.52□□□□□ -0.73
PNKP-231ENST00000640501 TRPM3Q9HCF6 1732 aaPredicted RBP10.52□□□□□ -0.73
PNKP-231ENST00000640501 PLEKHG2Q9H7P9 1386 aa10.52□□□□□ -0.73
PNKP-231ENST00000640501 VIRMAQ69YN4 1812 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms