RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 CCDC9Q9Y3X0 531 aaKnown RBP36.93■■■■□ 3.5
VEGFA-231ENST00000640499 RGPD5Q99666 1765 aa36.92■■■■□ 3.5
VEGFA-231ENST00000640499 ONECUT3O60422 494 aaPredicted RBP36.92■■■■□ 3.5
VEGFA-231ENST00000640499 LARP1Q6PKG0 1096 aaKnown RBP36.92■■■■□ 3.5
VEGFA-231ENST00000640499 WASHC2AQ641Q2 1341 aa36.9■■■■□ 3.5
VEGFA-231ENST00000640499 CCDC7Q96M83 1385 aa36.9■■■■□ 3.5
VEGFA-231ENST00000640499 LTN1O94822 1766 aa36.89■■■■□ 3.5
VEGFA-231ENST00000640499 EVA1CP58658 441 aa36.89■■■■□ 3.5
VEGFA-231ENST00000640499 SPATA31A1Q5TZJ5 1347 aa36.88■■■■□ 3.49
VEGFA-231ENST00000640499 ABCC6O95255 1503 aa36.84■■■■□ 3.49
VEGFA-231ENST00000640499 FAM98CQ17RN3 349 aaKnown RBP36.83■■■■□ 3.49
VEGFA-231ENST00000640499 SEPT12Q8IYM1 358 aa36.82■■■■□ 3.48
VEGFA-231ENST00000640499 CGNL1Q0VF96 1302 aa36.82■■■■□ 3.48
VEGFA-231ENST00000640499 MAP3K19Q56UN5 1328 aa36.82■■■■□ 3.48
VEGFA-231ENST00000640499 BRWD3Q6RI45 1802 aa36.8■■■■□ 3.48
VEGFA-231ENST00000640499 USP35Q9P2H5 1018 aa36.78■■■■□ 3.48
VEGFA-231ENST00000640499 WDR17Q8IZU2 1322 aa36.78■■■■□ 3.48
VEGFA-231ENST00000640499 CRB1P82279 1406 aa36.77■■■■□ 3.48
VEGFA-231ENST00000640499 RRS1Q15050 365 aaKnown RBP36.77■■■■□ 3.48
VEGFA-231ENST00000640499 THSD7AQ9UPZ6 1657 aa36.77■■■■□ 3.48
VEGFA-231ENST00000640499 IP6K1Q92551 441 aa36.76■■■■□ 3.48
VEGFA-231ENST00000640499 PER1O15534 1290 aaPredicted RBP36.74■■■■□ 3.47
VEGFA-231ENST00000640499 BARGINQ6ZT62 677 aa36.73■■■■□ 3.47
VEGFA-231ENST00000640499 TCP11L2Q8N4U5 519 aa36.73■■■■□ 3.47
VEGFA-231ENST00000640499 ANKRD26Q9UPS8 1709 aa36.73■■■■□ 3.47
VEGFA-231ENST00000640499 HOXC9P31274 260 aa36.72■■■■□ 3.47
VEGFA-231ENST00000640499 ERBB3P21860 1342 aa36.71■■■■□ 3.47
VEGFA-231ENST00000640499 TOM1L2Q6ZVM7 507 aa36.71■■■■□ 3.47
VEGFA-231ENST00000640499 AMER1Q5JTC6 1135 aaPredicted RBP36.7■■■■□ 3.47
VEGFA-231ENST00000640499 PEAK1Q9H792 1746 aa36.7■■■■□ 3.47
VEGFA-231ENST00000640499 BLMP54132 1417 aaPredicted RBP36.68■■■■□ 3.46
VEGFA-231ENST00000640499 ANKRD24Q8TF21 1146 aa36.68■■■■□ 3.46
VEGFA-231ENST00000640499 THRAP3Q9Y2W1 955 aaKnown RBP36.68■■■■□ 3.46
VEGFA-231ENST00000640499 CARD10Q9BWT7 1032 aa36.67■■■■□ 3.46
VEGFA-231ENST00000640499 KNSTRNQ9Y448 316 aa36.67■■■■□ 3.46
VEGFA-231ENST00000640499 CSB-PGBD3P0DP91 1061 aa36.66■■■■□ 3.46
VEGFA-231ENST00000640499 AMPHP49418 695 aa36.66■■■■□ 3.46
VEGFA-231ENST00000640499 UPF1Q92900 1129 aaKnown RBP eCLIP36.66■■■■□ 3.46
VEGFA-231ENST00000640499 A0A0G2JS52 829 aa36.64■■■■□ 3.46
VEGFA-231ENST00000640499 ZEB1P37275 1124 aaPredicted RBP36.64■■■■□ 3.46
VEGFA-231ENST00000640499 MYT1Q01538 1121 aa36.64■■■■□ 3.46
VEGFA-231ENST00000640499 EMILIN1Q9Y6C2 1016 aa36.64■■■■□ 3.46
VEGFA-231ENST00000640499 RTL1A6NKG5 1358 aa36.64■■■■□ 3.46
VEGFA-231ENST00000640499 NSD2O96028 1365 aa36.64■■■■□ 3.46
VEGFA-231ENST00000640499 KRT27Q7Z3Y8 459 aa36.63■■■■□ 3.45
VEGFA-231ENST00000640499 EP400Q96L91 3159 aa36.63■■■■□ 3.45
VEGFA-231ENST00000640499 MAP2P11137 1827 aaKnown RBP36.62■■■■□ 3.45
VEGFA-231ENST00000640499 LTV1Q96GA3 475 aaPredicted RBP36.61■■■■□ 3.45
VEGFA-231ENST00000640499 POLKQ9UBT6 870 aa36.61■■■■□ 3.45
VEGFA-231ENST00000640499 TNNT2P45379 298 aaPredicted RBP36.6■■■■□ 3.45
VEGFA-231ENST00000640499 HSP90AB2PQ58FF8 381 aa36.6■■■■□ 3.45
VEGFA-231ENST00000640499 WNK3Q9BYP7 1800 aa36.59■■■■□ 3.45
VEGFA-231ENST00000640499 NLRP2Q9NX02 1062 aa36.58■■■■□ 3.45
VEGFA-231ENST00000640499 DISP2A7MBM2 1401 aa36.58■■■■□ 3.45
VEGFA-231ENST00000640499 PARP4Q9UKK3 1724 aaKnown RBP36.57■■■■□ 3.45
VEGFA-231ENST00000640499 KIF24Q5T7B8 1368 aa36.57■■■■□ 3.45
VEGFA-231ENST00000640499 FLT4P35916 1363 aa36.56■■■■□ 3.44
VEGFA-231ENST00000640499 FAM182BQ5T319 152 aa36.56■■■■□ 3.44
VEGFA-231ENST00000640499 RGPD2P0DJD1 1756 aa36.55■■■■□ 3.44
VEGFA-231ENST00000640499 INSRP06213 1382 aa36.55■■■■□ 3.44
VEGFA-231ENST00000640499 MORC1Q86VD1 984 aa36.55■■■■□ 3.44
VEGFA-231ENST00000640499 FAM208AQ9UK61 1670 aaKnown RBP36.51■■■■□ 3.44
VEGFA-231ENST00000640499 LRRC37A3O60309 1634 aa36.51■■■■□ 3.43
VEGFA-231ENST00000640499 PPM1GO15355 546 aaPredicted RBP36.5■■■■□ 3.43
VEGFA-231ENST00000640499 CC2D1BQ5T0F9 858 aaKnown RBP36.49■■■■□ 3.43
VEGFA-231ENST00000640499 NBPF6Q5VWK0 638 aa36.49■■■■□ 3.43
VEGFA-231ENST00000640499 NBPF4Q96M43 638 aa36.49■■■■□ 3.43
VEGFA-231ENST00000640499 NPC1L1Q9UHC9 1359 aa36.48■■■■□ 3.43
VEGFA-231ENST00000640499 SMG6Q86US8 1419 aaKnown RBP36.47■■■■□ 3.43
VEGFA-231ENST00000640499 CDCA7Q9BWT1 371 aaPredicted RBP36.46■■■■□ 3.43
VEGFA-231ENST00000640499 PDE3BQ13370 1112 aa36.44■■■■□ 3.42
VEGFA-231ENST00000640499 DDB1Q16531 1140 aa36.43■■■■□ 3.42
VEGFA-231ENST00000640499 IL2RBP14784 551 aa36.41■■■■□ 3.42
VEGFA-231ENST00000640499 USHBP1Q8N6Y0 703 aa36.4■■■■□ 3.42
VEGFA-231ENST00000640499 MARCH10Q8NA82 808 aaPredicted RBP36.39■■■■□ 3.42
VEGFA-231ENST00000640499 CNGB1Q14028 1251 aaPredicted RBP36.38■■■■□ 3.41
VEGFA-231ENST00000640499 EXOC5O00471 708 aa36.36■■■■□ 3.41
VEGFA-231ENST00000640499 EIF4A2Q14240 407 aaKnown RBP36.36■■■■□ 3.41
VEGFA-231ENST00000640499 FAM196AQ6ZSG2 479 aa36.36■■■■□ 3.41
VEGFA-231ENST00000640499 NCAPD2Q15021 1401 aa36.34■■■■□ 3.41
VEGFA-231ENST00000640499 TNS2Q63HR2 1409 aa36.34■■■■□ 3.41
VEGFA-231ENST00000640499 MEGF6O75095 1541 aa36.34■■■■□ 3.41
VEGFA-231ENST00000640499 CCDC125Q86Z20 511 aa36.34■■■■□ 3.41
VEGFA-231ENST00000640499 EYA1Q99502 592 aa36.34■■■■□ 3.41
VEGFA-231ENST00000640499 MTHFSP49914 203 aa36.31■■■■□ 3.4
VEGFA-231ENST00000640499 DDX10Q13206 875 aaKnown RBP36.28■■■■□ 3.4
VEGFA-231ENST00000640499 OVOS2A0A0G2JMS6 1433 aa36.27■■■■□ 3.4
VEGFA-231ENST00000640499 TRIM37O94972 964 aa36.26■■■■□ 3.4
VEGFA-231ENST00000640499 SHANK3Q9BYB0 1731 aa36.25■■■■□ 3.39
VEGFA-231ENST00000640499 TNS1Q9HBL0 1735 aaKnown RBP36.25■■■■□ 3.39
VEGFA-231ENST00000640499 DEFB132Q7Z7B7 95 aa36.25■■■■□ 3.39
VEGFA-231ENST00000640499 BCL9O00512 1426 aa36.25■■■■□ 3.39
VEGFA-231ENST00000640499 SBF2Q86WG5 1849 aa36.24■■■■□ 3.39
VEGFA-231ENST00000640499 RGPD1P0DJD0 1748 aa36.24■■■■□ 3.39
VEGFA-231ENST00000640499 IL13P35225 146 aa36.23■■■■□ 3.39
VEGFA-231ENST00000640499 PTF1AQ7RTS3 328 aa36.23■■■■□ 3.39
VEGFA-231ENST00000640499 IGSF1Q8N6C5 1336 aa36.22■■■■□ 3.39
VEGFA-231ENST00000640499 ZCRB1Q8TBF4 217 aaKnown RBP36.2■■■■□ 3.39
VEGFA-231ENST00000640499 RAPGEF4Q8WZA2 1011 aa36.2■■■■□ 3.39
VEGFA-231ENST00000640499 TATP17735 454 aaPredicted RBP36.18■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms