RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 BLMP54132 1417 aaPredicted RBP18.8■□□□□ 0.6
CLN3-242ENST00000635958 CABLES1Q8TDN4 633 aa18.79■□□□□ 0.6
CLN3-242ENST00000635958 COL16A1Q07092 1604 aaPredicted RBP18.79■□□□□ 0.6
CLN3-242ENST00000635958 LTN1O94822 1766 aa18.78■□□□□ 0.6
CLN3-242ENST00000635958 CPDO75976 1380 aa18.78■□□□□ 0.6
CLN3-242ENST00000635958 EIF4A2Q14240 407 aaKnown RBP18.78■□□□□ 0.6
CLN3-242ENST00000635958 PHLPP1O60346 1717 aa18.78■□□□□ 0.6
CLN3-242ENST00000635958 U2AF1L5P0DN76 240 aaPredicted RBP18.77■□□□□ 0.6
CLN3-242ENST00000635958 U2AF1Q01081 240 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-242ENST00000635958 U2SURPO15042 1029 aaKnown RBP18.76■□□□□ 0.59
CLN3-242ENST00000635958 ZC3H6P61129 1189 aaKnown RBP18.76■□□□□ 0.59
CLN3-242ENST00000635958 HNRNPUQ00839 825 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLN3-242ENST00000635958 COL22A1Q8NFW1 1626 aaPredicted RBP18.75■□□□□ 0.59
CLN3-242ENST00000635958 PLEKHG5O94827 1062 aa18.74■□□□□ 0.59
CLN3-242ENST00000635958 FCHSD2O94868 740 aa18.74■□□□□ 0.59
CLN3-242ENST00000635958 ABCC6O95255 1503 aa18.74■□□□□ 0.59
CLN3-242ENST00000635958 PNNQ9H307 717 aaKnown RBP18.73■□□□□ 0.59
CLN3-242ENST00000635958 ABCA3Q99758 1704 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 COL18A1P39060 1754 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 RUNDC1Q96C34 613 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 PLEKHF1Q96S99 279 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 RGPD1P0DJD0 1748 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 AXIN2Q9Y2T1 843 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 KIAA0232Q92628 1395 aa18.72■□□□□ 0.59
CLN3-242ENST00000635958 NEFLP07196 543 aa18.71■□□□□ 0.59
CLN3-242ENST00000635958 RSPH6AQ9H0K4 717 aa18.71■□□□□ 0.59
CLN3-242ENST00000635958 ZBED9Q6R2W3 1325 aa18.7■□□□□ 0.58
CLN3-242ENST00000635958 IGSF1Q8N6C5 1336 aa18.7■□□□□ 0.58
CLN3-242ENST00000635958 EYA1Q99502 592 aa18.7■□□□□ 0.58
CLN3-242ENST00000635958 CCDC146Q8IYE0 955 aa18.7■□□□□ 0.58
CLN3-242ENST00000635958 NGEFQ8N5V2 710 aa18.7■□□□□ 0.58
CLN3-242ENST00000635958 ZBTB7CA1YPR0 619 aa18.69■□□□□ 0.58
CLN3-242ENST00000635958 HAP1P54257 671 aaPredicted RBP18.69■□□□□ 0.58
CLN3-242ENST00000635958 NCBP3Q53F19 620 aaKnown RBP18.69■□□□□ 0.58
CLN3-242ENST00000635958 KDRP35968 1356 aa18.68■□□□□ 0.58
CLN3-242ENST00000635958 APAF1O14727 1248 aa18.67■□□□□ 0.58
CLN3-242ENST00000635958 HMOX1P09601 288 aa18.67■□□□□ 0.58
CLN3-242ENST00000635958 SULT6B1Q6IMI4 303 aa18.67■□□□□ 0.58
CLN3-242ENST00000635958 ANKRD24Q8TF21 1146 aa18.67■□□□□ 0.58
CLN3-242ENST00000635958 PRDM11Q9NQV5 511 aa18.67■□□□□ 0.58
CLN3-242ENST00000635958 ERBB3P21860 1342 aa18.66■□□□□ 0.58
CLN3-242ENST00000635958 CHRNA2Q15822 529 aa18.66■□□□□ 0.58
CLN3-242ENST00000635958 LTV1Q96GA3 475 aaPredicted RBP18.66■□□□□ 0.58
CLN3-242ENST00000635958 JCADQ9P266 1359 aa18.66■□□□□ 0.58
CLN3-242ENST00000635958 PRKAR2BP31323 418 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 TCP11L2Q8N4U5 519 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 FAM83GA6ND36 823 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 NCAPD2Q15021 1401 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 NBPF6Q5VWK0 638 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 ILDR2Q71H61 639 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 AEBP1Q8IUX7 1158 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 NBPF4Q96M43 638 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 TSHZ2Q9NRE2 1034 aa18.65■□□□□ 0.58
CLN3-242ENST00000635958 LMO7Q8WWI1 1683 aa18.64■□□□□ 0.58
CLN3-242ENST00000635958 RGPD5Q99666 1765 aa18.64■□□□□ 0.58
CLN3-242ENST00000635958 SOCS7O14512 581 aa18.64■□□□□ 0.57
CLN3-242ENST00000635958 CAMTA1Q9Y6Y1 1673 aa18.63■□□□□ 0.57
CLN3-242ENST00000635958 MAPK8IP3Q9UPT6 1336 aa18.62■□□□□ 0.57
CLN3-242ENST00000635958 PHACTR3Q96KR7 559 aa18.62■□□□□ 0.57
CLN3-242ENST00000635958 PHF23Q9BUL5 403 aaPredicted RBP18.62■□□□□ 0.57
CLN3-242ENST00000635958 ZNF521Q96K83 1311 aa18.62■□□□□ 0.57
CLN3-242ENST00000635958 NEFMP07197 916 aa18.61■□□□□ 0.57
CLN3-242ENST00000635958 CCDC27Q2M243 656 aa18.61■□□□□ 0.57
CLN3-242ENST00000635958 TMPOP42166 694 aaKnown RBP18.6■□□□□ 0.57
CLN3-242ENST00000635958 SENP3-EIF4A1A0A087X0R7 540 aa18.6■□□□□ 0.57
CLN3-242ENST00000635958 COL14A1Q05707 1796 aaKnown RBP18.59■□□□□ 0.57
CLN3-242ENST00000635958 SPATA31A6Q5VVP1 1343 aa18.59■□□□□ 0.57
CLN3-242ENST00000635958 COL5A2P05997 1499 aaPredicted RBP18.59■□□□□ 0.57
CLN3-242ENST00000635958 FAM208AQ9UK61 1670 aaKnown RBP18.59■□□□□ 0.57
CLN3-242ENST00000635958 PDE3BQ13370 1112 aa18.58■□□□□ 0.57
CLN3-242ENST00000635958 SALL2Q9Y467 1007 aaPredicted RBP18.58■□□□□ 0.57
CLN3-242ENST00000635958 RGPD2P0DJD1 1756 aa18.58■□□□□ 0.57
CLN3-242ENST00000635958 WDR17Q8IZU2 1322 aa18.58■□□□□ 0.57
CLN3-242ENST00000635958 FKBP8Q14318 412 aa18.58■□□□□ 0.56
CLN3-242ENST00000635958 NFE2L2Q16236 605 aa18.58■□□□□ 0.56
CLN3-242ENST00000635958 CSB-PGBD3P0DP91 1061 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 ERICH6BQ5W0A0 696 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 WWC1Q8IX03 1113 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 USHBP1Q8N6Y0 703 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 NLRP2Q9NX02 1062 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 RRP7AQ9Y3A4 280 aaKnown RBP18.56■□□□□ 0.56
CLN3-242ENST00000635958 BTG4Q9NY30 223 aa18.56■□□□□ 0.56
CLN3-242ENST00000635958 NUTM2BA6NNL0 878 aaPredicted RBP18.55■□□□□ 0.56
CLN3-242ENST00000635958 NUTM2EB1AL46 878 aaPredicted RBP18.55■□□□□ 0.56
CLN3-242ENST00000635958 ADAMTS2O95450 1211 aa18.55■□□□□ 0.56
CLN3-242ENST00000635958 RIPK4P57078 832 aa18.55■□□□□ 0.56
CLN3-242ENST00000635958 NUTM2AQ8IVF1 878 aaPredicted RBP18.55■□□□□ 0.56
CLN3-242ENST00000635958 TRIM35Q9UPQ4 493 aa18.55■□□□□ 0.56
CLN3-242ENST00000635958 PLEKHG2Q9H7P9 1386 aa18.55■□□□□ 0.56
CLN3-242ENST00000635958 NEUROD2Q15784 382 aa18.54■□□□□ 0.56
CLN3-242ENST00000635958 EVA1CP58658 441 aa18.53■□□□□ 0.56
CLN3-242ENST00000635958 WDR63Q8IWG1 891 aa18.53■□□□□ 0.56
CLN3-242ENST00000635958 CARD10Q9BWT7 1032 aa18.53■□□□□ 0.56
CLN3-242ENST00000635958 GOLGA2Q08379 1002 aa18.52■□□□□ 0.56
CLN3-242ENST00000635958 MTHFSDQ2M296 383 aaKnown RBP18.52■□□□□ 0.56
CLN3-242ENST00000635958 GAS2L2Q8NHY3 880 aa18.52■□□□□ 0.56
CLN3-242ENST00000635958 LARP1Q6PKG0 1096 aaKnown RBP18.51■□□□□ 0.55
CLN3-242ENST00000635958 TOM1L2Q6ZVM7 507 aa18.51■□□□□ 0.55
CLN3-242ENST00000635958 SLIT2O94813 1529 aa18.51■□□□□ 0.55
CLN3-242ENST00000635958 AMOTQ4VCS5 1084 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms