RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 MYOM1P52179 1685 aa19.8■□□□□ 0.76
PNKP-223ENST00000629179 LTN1O94822 1766 aa19.8■□□□□ 0.76
PNKP-223ENST00000629179 THSD7AQ9UPZ6 1657 aa19.79■□□□□ 0.76
PNKP-223ENST00000629179 OVOS2A0A0J9YW53 1432 aa19.77■□□□□ 0.76
PNKP-223ENST00000629179 OVOS2Q6IE36 1432 aa19.77■□□□□ 0.76
PNKP-223ENST00000629179 TCP11L2Q8N4U5 519 aa19.77■□□□□ 0.76
PNKP-223ENST00000629179 POLR3GLQ9BT43 218 aa19.77■□□□□ 0.76
PNKP-223ENST00000629179 EP400Q96L91 3159 aa19.76■□□□□ 0.75
PNKP-223ENST00000629179 BARGINQ6ZT62 677 aa19.76■□□□□ 0.75
PNKP-223ENST00000629179 CRB1P82279 1406 aa19.76■□□□□ 0.75
PNKP-223ENST00000629179 FAM182BQ5T319 152 aa19.75■□□□□ 0.75
PNKP-223ENST00000629179 TOM1L2Q6ZVM7 507 aa19.75■□□□□ 0.75
PNKP-223ENST00000629179 COG3Q96JB2 828 aa19.75■□□□□ 0.75
PNKP-223ENST00000629179 FYB1O15117 783 aa19.74■□□□□ 0.75
PNKP-223ENST00000629179 CARD14Q9BXL6 1004 aa19.74■□□□□ 0.75
PNKP-223ENST00000629179 WDR17Q8IZU2 1322 aa19.74■□□□□ 0.75
PNKP-223ENST00000629179 FBLN1P23142 703 aa19.73■□□□□ 0.75
PNKP-223ENST00000629179 GGNBP2Q9H3C7 697 aa19.73■□□□□ 0.75
PNKP-223ENST00000629179 THRAP3Q9Y2W1 955 aaKnown RBP19.73■□□□□ 0.75
PNKP-223ENST00000629179 KIF20BQ96Q89 1820 aa19.73■□□□□ 0.75
PNKP-223ENST00000629179 CSB-PGBD3P0DP91 1061 aa19.72■□□□□ 0.75
PNKP-223ENST00000629179 CCDC125Q86Z20 511 aa19.72■□□□□ 0.75
PNKP-223ENST00000629179 ABCC6O95255 1503 aa19.71■□□□□ 0.75
PNKP-223ENST00000629179 C11orf95C9JLR9 678 aaPredicted RBP19.7■□□□□ 0.74
PNKP-223ENST00000629179 BLMP54132 1417 aaPredicted RBP19.69■□□□□ 0.74
PNKP-223ENST00000629179 NSD3Q9BZ95 1437 aa19.69■□□□□ 0.74
PNKP-223ENST00000629179 PARP4Q9UKK3 1724 aaKnown RBP19.68■□□□□ 0.74
PNKP-223ENST00000629179 WNK3Q9BYP7 1800 aa19.68■□□□□ 0.74
PNKP-223ENST00000629179 PDE3BQ13370 1112 aa19.68■□□□□ 0.74
PNKP-223ENST00000629179 CARD10Q9BWT7 1032 aa19.68■□□□□ 0.74
PNKP-223ENST00000629179 IP6K1Q92551 441 aa19.67■□□□□ 0.74
PNKP-223ENST00000629179 MAP3K19Q56UN5 1328 aa19.67■□□□□ 0.74
PNKP-223ENST00000629179 SF3B2Q13435 895 aaKnown RBP19.66■□□□□ 0.74
PNKP-223ENST00000629179 ANKRD24Q8TF21 1146 aa19.66■□□□□ 0.74
PNKP-223ENST00000629179 ERBB3P21860 1342 aa19.66■□□□□ 0.74
PNKP-223ENST00000629179 DEFB132Q7Z7B7 95 aa19.65■□□□□ 0.74
PNKP-223ENST00000629179 NLRP2Q9NX02 1062 aa19.65■□□□□ 0.74
PNKP-223ENST00000629179 AMPHP49418 695 aa19.64■□□□□ 0.73
PNKP-223ENST00000629179 RRS1Q15050 365 aaKnown RBP19.64■□□□□ 0.73
PNKP-223ENST00000629179 FAM196AQ6ZSG2 479 aa19.64■□□□□ 0.73
PNKP-223ENST00000629179 LTV1Q96GA3 475 aaPredicted RBP19.64■□□□□ 0.73
PNKP-223ENST00000629179 HOXC9P31274 260 aa19.63■□□□□ 0.73
PNKP-223ENST00000629179 PANK3Q9H999 370 aa19.63■□□□□ 0.73
PNKP-223ENST00000629179 RGPD2P0DJD1 1756 aa19.62■□□□□ 0.73
PNKP-223ENST00000629179 RGPD1P0DJD0 1748 aa19.62■□□□□ 0.73
PNKP-223ENST00000629179 LRRC37A3O60309 1634 aa19.62■□□□□ 0.73
PNKP-223ENST00000629179 CCDC7Q96M83 1385 aa19.62■□□□□ 0.73
PNKP-223ENST00000629179 DDB1Q16531 1140 aa19.62■□□□□ 0.73
PNKP-223ENST00000629179 MAP2P11137 1827 aaKnown RBP19.62■□□□□ 0.73
PNKP-223ENST00000629179 KAT6BQ8WYB5 2073 aa19.61■□□□□ 0.73
PNKP-223ENST00000629179 CGNL1Q0VF96 1302 aa19.61■□□□□ 0.73
PNKP-223ENST00000629179 CDCA7Q9BWT1 371 aaPredicted RBP19.61■□□□□ 0.73
PNKP-223ENST00000629179 DISP2A7MBM2 1401 aa19.6■□□□□ 0.73
PNKP-223ENST00000629179 TRIM37O94972 964 aa19.6■□□□□ 0.73
PNKP-223ENST00000629179 TNS1Q9HBL0 1735 aaKnown RBP19.59■□□□□ 0.73
PNKP-223ENST00000629179 SBF2Q86WG5 1849 aa19.58■□□□□ 0.73
PNKP-223ENST00000629179 KIF7Q2M1P5 1343 aa19.58■□□□□ 0.73
PNKP-223ENST00000629179 BAG6P46379 1132 aa19.58■□□□□ 0.72
PNKP-223ENST00000629179 PEAK1Q9H792 1746 aa19.58■□□□□ 0.72
PNKP-223ENST00000629179 FAM208AQ9UK61 1670 aaKnown RBP19.58■□□□□ 0.72
PNKP-223ENST00000629179 ANKRD26Q9UPS8 1709 aa19.57■□□□□ 0.72
PNKP-223ENST00000629179 EXOC5O00471 708 aa19.57■□□□□ 0.72
PNKP-223ENST00000629179 MARCH10Q8NA82 808 aaPredicted RBP19.57■□□□□ 0.72
PNKP-223ENST00000629179 RTL1A6NKG5 1358 aa19.57■□□□□ 0.72
PNKP-223ENST00000629179 EN1Q05925 392 aaPredicted RBP19.56■□□□□ 0.72
PNKP-223ENST00000629179 IL2RBP14784 551 aa19.55■□□□□ 0.72
PNKP-223ENST00000629179 HSP90AB2PQ58FF8 381 aa19.55■□□□□ 0.72
PNKP-223ENST00000629179 EMILIN1Q9Y6C2 1016 aa19.55■□□□□ 0.72
PNKP-223ENST00000629179 OVOS2A0A0G2JMS6 1433 aa19.54■□□□□ 0.72
PNKP-223ENST00000629179 APBA3O96018 575 aa19.53■□□□□ 0.72
PNKP-223ENST00000629179 TNNT2P45379 298 aaPredicted RBP19.53■□□□□ 0.72
PNKP-223ENST00000629179 PPM1GO15355 546 aaPredicted RBP19.52■□□□□ 0.72
PNKP-223ENST00000629179 INSRP06213 1382 aa19.52■□□□□ 0.72
PNKP-223ENST00000629179 FLT4P35916 1363 aa19.52■□□□□ 0.72
PNKP-223ENST00000629179 NBPF6Q5VWK0 638 aa19.51■□□□□ 0.71
PNKP-223ENST00000629179 NBPF4Q96M43 638 aa19.51■□□□□ 0.71
PNKP-223ENST00000629179 TNS2Q63HR2 1409 aa19.51■□□□□ 0.71
PNKP-223ENST00000629179 KIF24Q5T7B8 1368 aa19.5■□□□□ 0.71
PNKP-223ENST00000629179 EZH2Q15910 746 aaKnown RBP19.5■□□□□ 0.71
PNKP-223ENST00000629179 USHBP1Q8N6Y0 703 aa19.5■□□□□ 0.71
PNKP-223ENST00000629179 POLKQ9UBT6 870 aa19.5■□□□□ 0.71
PNKP-223ENST00000629179 KNSTRNQ9Y448 316 aa19.5■□□□□ 0.71
PNKP-223ENST00000629179 PTF1AQ7RTS3 328 aa19.49■□□□□ 0.71
PNKP-223ENST00000629179 CAMKK2Q96RR4 588 aa19.49■□□□□ 0.71
PNKP-223ENST00000629179 SMG6Q86US8 1419 aaKnown RBP19.49■□□□□ 0.71
PNKP-223ENST00000629179 WASHC2AQ641Q2 1341 aa19.47■□□□□ 0.71
PNKP-223ENST00000629179 NSD2O96028 1365 aa19.46■□□□□ 0.71
PNKP-223ENST00000629179 BCL9O00512 1426 aa19.46■□□□□ 0.71
PNKP-223ENST00000629179 MORC1Q86VD1 984 aa19.46■□□□□ 0.71
PNKP-223ENST00000629179 DDX54Q8TDD1 881 aaKnown RBP19.45■□□□□ 0.7
PNKP-223ENST00000629179 BCL11BQ9C0K0 894 aaPredicted RBP19.45■□□□□ 0.7
PNKP-223ENST00000629179 MEGF6O75095 1541 aa19.45■□□□□ 0.7
PNKP-223ENST00000629179 AMER1Q5JTC6 1135 aaPredicted RBP19.44■□□□□ 0.7
PNKP-223ENST00000629179 SHANK3Q9BYB0 1731 aa19.43■□□□□ 0.7
PNKP-223ENST00000629179 PER1O15534 1290 aaPredicted RBP19.43■□□□□ 0.7
PNKP-223ENST00000629179 KCNQ2O43526 872 aa19.43■□□□□ 0.7
PNKP-223ENST00000629179 ACSBG1Q96GR2 724 aa19.43■□□□□ 0.7
PNKP-223ENST00000629179 ZCRB1Q8TBF4 217 aaKnown RBP19.42■□□□□ 0.7
PNKP-223ENST00000629179 RAPGEF4Q8WZA2 1011 aa19.42■□□□□ 0.7
PNKP-223ENST00000629179 RREB1Q92766 1687 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms