RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 IP6K1Q92551 441 aa23.71■■□□□ 1.39
VRK3-225ENST00000601912 RSPH6AQ9H0K4 717 aa23.71■■□□□ 1.39
VRK3-225ENST00000601912 NCBP3Q53F19 620 aaKnown RBP23.7■■□□□ 1.39
VRK3-225ENST00000601912 LTN1O94822 1766 aa23.7■■□□□ 1.38
VRK3-225ENST00000601912 HMOX1P09601 288 aa23.7■■□□□ 1.38
VRK3-225ENST00000601912 ARHGEF25Q86VW2 580 aa23.7■■□□□ 1.38
VRK3-225ENST00000601912 ZBTB7CA1YPR0 619 aa23.69■■□□□ 1.38
VRK3-225ENST00000601912 PRKAR2BP31323 418 aa23.69■■□□□ 1.38
VRK3-225ENST00000601912 NHSL1Q5SYE7 1610 aa23.69■■□□□ 1.38
VRK3-225ENST00000601912 IQSEC2Q5JU85 1478 aa23.68■■□□□ 1.38
VRK3-225ENST00000601912 MED1Q15648 1581 aaPredicted RBP23.67■■□□□ 1.38
VRK3-225ENST00000601912 TOM1O60784 492 aa23.67■■□□□ 1.38
VRK3-225ENST00000601912 ZNF521Q96K83 1311 aa23.67■■□□□ 1.38
VRK3-225ENST00000601912 NEUROD2Q15784 382 aa23.67■■□□□ 1.38
VRK3-225ENST00000601912 SULT6B1Q6IMI4 303 aa23.66■■□□□ 1.38
VRK3-225ENST00000601912 RRP7AQ9Y3A4 280 aaKnown RBP23.66■■□□□ 1.38
VRK3-225ENST00000601912 PHRF1Q9P1Y6 1649 aaKnown RBP23.66■■□□□ 1.38
VRK3-225ENST00000601912 GOLGA2Q08379 1002 aa23.65■■□□□ 1.38
VRK3-225ENST00000601912 CCDC27Q2M243 656 aa23.65■■□□□ 1.38
VRK3-225ENST00000601912 ROBO1Q9Y6N7 1651 aa23.65■■□□□ 1.38
VRK3-225ENST00000601912 TMPOP42166 694 aaKnown RBP23.64■■□□□ 1.37
VRK3-225ENST00000601912 ZC3H6P61129 1189 aaKnown RBP23.64■■□□□ 1.37
VRK3-225ENST00000601912 CABLES1Q8TDN4 633 aa23.64■■□□□ 1.37
VRK3-225ENST00000601912 WWC1Q8IX03 1113 aa23.63■■□□□ 1.37
VRK3-225ENST00000601912 LTV1Q96GA3 475 aaPredicted RBP23.63■■□□□ 1.37
VRK3-225ENST00000601912 RGPD1P0DJD0 1748 aa23.62■■□□□ 1.37
VRK3-225ENST00000601912 CDCA7LQ96GN5 454 aa23.62■■□□□ 1.37
VRK3-225ENST00000601912 EYA1Q99502 592 aa23.62■■□□□ 1.37
VRK3-225ENST00000601912 IGSF1Q8N6C5 1336 aa23.61■■□□□ 1.37
VRK3-225ENST00000601912 LRRC59Q96AG4 307 aaKnown RBP23.61■■□□□ 1.37
VRK3-225ENST00000601912 AEBP1Q8IUX7 1158 aa23.6■■□□□ 1.37
VRK3-225ENST00000601912 PHF23Q9BUL5 403 aaPredicted RBP23.6■■□□□ 1.37
VRK3-225ENST00000601912 AHDC1Q5TGY3 1603 aaPredicted RBP23.6■■□□□ 1.37
VRK3-225ENST00000601912 HAP1P54257 671 aaPredicted RBP23.6■■□□□ 1.37
VRK3-225ENST00000601912 RIPK4P57078 832 aa23.59■■□□□ 1.37
VRK3-225ENST00000601912 WDR63Q8IWG1 891 aa23.59■■□□□ 1.37
VRK3-225ENST00000601912 PHACTR3Q96KR7 559 aa23.59■■□□□ 1.37
VRK3-225ENST00000601912 NFE2L2Q16236 605 aa23.58■■□□□ 1.37
VRK3-225ENST00000601912 CPDO75976 1380 aa23.57■■□□□ 1.36
VRK3-225ENST00000601912 KDRP35968 1356 aa23.57■■□□□ 1.36
VRK3-225ENST00000601912 CRYBG1Q9Y4K1 1723 aa23.57■■□□□ 1.36
VRK3-225ENST00000601912 E9PSI1 815 aa23.57■■□□□ 1.36
VRK3-225ENST00000601912 SLFN5Q08AF3 891 aa23.56■■□□□ 1.36
VRK3-225ENST00000601912 UBAP1LF5GYI3 381 aa23.55■■□□□ 1.36
VRK3-225ENST00000601912 PIP4K2BP78356 416 aa23.55■■□□□ 1.36
VRK3-225ENST00000601912 ANKRD24Q8TF21 1146 aa23.55■■□□□ 1.36
VRK3-225ENST00000601912 AXIN2Q9Y2T1 843 aa23.54■■□□□ 1.36
VRK3-225ENST00000601912 ABCC6O95255 1503 aa23.54■■□□□ 1.36
VRK3-225ENST00000601912 KIAA0232Q92628 1395 aa23.54■■□□□ 1.36
VRK3-225ENST00000601912 TRIM35Q9UPQ4 493 aa23.54■■□□□ 1.36
VRK3-225ENST00000601912 GTF3C3Q9Y5Q9 886 aa23.54■■□□□ 1.36
VRK3-225ENST00000601912 LMOD3Q0VAK6 560 aa23.53■■□□□ 1.36
VRK3-225ENST00000601912 NBPF6Q5VWK0 638 aa23.52■■□□□ 1.36
VRK3-225ENST00000601912 DUSP27Q5VZP5 1158 aa23.52■■□□□ 1.36
VRK3-225ENST00000601912 NBPF4Q96M43 638 aa23.52■■□□□ 1.36
VRK3-225ENST00000601912 TRMT2AQ8IZ69 625 aaKnown RBP23.51■■□□□ 1.35
VRK3-225ENST00000601912 PRDM11Q9NQV5 511 aa23.51■■□□□ 1.35
VRK3-225ENST00000601912 SUPT16HQ9Y5B9 1047 aaKnown RBP23.51■■□□□ 1.35
VRK3-225ENST00000601912 CHRNA2Q15822 529 aa23.51■■□□□ 1.35
VRK3-225ENST00000601912 CERKQ8TCT0 537 aa23.51■■□□□ 1.35
VRK3-225ENST00000601912 ERBB3P21860 1342 aa23.51■■□□□ 1.35
VRK3-225ENST00000601912 SPINK5Q9NQ38 1064 aaPredicted RBP23.49■■□□□ 1.35
VRK3-225ENST00000601912 COL18A1P39060 1754 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 PHLPP1O60346 1717 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 NEFLP07196 543 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 CALD1Q05682 793 aaKnown RBP23.48■■□□□ 1.35
VRK3-225ENST00000601912 USHBP1Q8N6Y0 703 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 IL16Q14005 1332 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 GAS2L2Q8NHY3 880 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 MYH16Q9H6N6 1097 aa23.48■■□□□ 1.35
VRK3-225ENST00000601912 ABCA3Q99758 1704 aa23.47■■□□□ 1.35
VRK3-225ENST00000601912 RGPD5Q99666 1765 aa23.47■■□□□ 1.35
VRK3-225ENST00000601912 CSB-PGBD3P0DP91 1061 aa23.46■■□□□ 1.35
VRK3-225ENST00000601912 RCAN3Q9UKA8 241 aa23.45■■□□□ 1.34
VRK3-225ENST00000601912 MTHFSDQ2M296 383 aaKnown RBP23.44■■□□□ 1.34
VRK3-225ENST00000601912 NLRP2Q9NX02 1062 aa23.44■■□□□ 1.34
VRK3-225ENST00000601912 COL16A1Q07092 1604 aaPredicted RBP23.44■■□□□ 1.34
VRK3-225ENST00000601912 NCAPD2Q15021 1401 aa23.44■■□□□ 1.34
VRK3-225ENST00000601912 COL22A1Q8NFW1 1626 aaPredicted RBP23.43■■□□□ 1.34
VRK3-225ENST00000601912 RGPD2P0DJD1 1756 aa23.42■■□□□ 1.34
VRK3-225ENST00000601912 DLG5Q8TDM6 1919 aa23.42■■□□□ 1.34
VRK3-225ENST00000601912 RTF1Q92541 710 aaKnown RBP23.41■■□□□ 1.34
VRK3-225ENST00000601912 FAM208AQ9UK61 1670 aaKnown RBP23.4■■□□□ 1.34
VRK3-225ENST00000601912 CAMTA1Q9Y6Y1 1673 aa23.4■■□□□ 1.34
VRK3-225ENST00000601912 HTATSF1O43719 755 aaKnown RBP23.39■■□□□ 1.34
VRK3-225ENST00000601912 AMOTQ4VCS5 1084 aa23.39■■□□□ 1.34
VRK3-225ENST00000601912 PLEKHO1Q53GL0 409 aaPredicted RBP23.39■■□□□ 1.34
VRK3-225ENST00000601912 FAM83GA6ND36 823 aa23.38■■□□□ 1.33
VRK3-225ENST00000601912 LMO7Q8WWI1 1683 aa23.38■■□□□ 1.33
VRK3-225ENST00000601912 GNAI1P63096 354 aa23.38■■□□□ 1.33
VRK3-225ENST00000601912 THUMPD2Q9BTF0 503 aaKnown RBP23.38■■□□□ 1.33
VRK3-225ENST00000601912 WDR17Q8IZU2 1322 aa23.37■■□□□ 1.33
VRK3-225ENST00000601912 GNAT3A8MTJ3 354 aa23.37■■□□□ 1.33
VRK3-225ENST00000601912 EVA1CP58658 441 aa23.37■■□□□ 1.33
VRK3-225ENST00000601912 RAPGEF4Q8WZA2 1011 aa23.37■■□□□ 1.33
VRK3-225ENST00000601912 IFT57Q9NWB7 429 aa23.37■■□□□ 1.33
VRK3-225ENST00000601912 FANCIQ9NVI1 1328 aa23.36■■□□□ 1.33
VRK3-225ENST00000601912 COL5A2P05997 1499 aaPredicted RBP23.36■■□□□ 1.33
VRK3-225ENST00000601912 DCTN1Q14203 1278 aa23.35■■□□□ 1.33
VRK3-225ENST00000601912 LAS1LQ9Y4W2 734 aaKnown RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms