RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 PARP4Q9UKK3 1724 aaKnown RBP12.28□□□□□ -0.44
SSBP4-208ENST00000600628 BARGINQ6ZT62 677 aa12.28□□□□□ -0.44
SSBP4-208ENST00000600628 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.28□□□□□ -0.44
SSBP4-208ENST00000600628 ANKRD26Q9UPS8 1709 aa12.28□□□□□ -0.44
SSBP4-208ENST00000600628 LARP1Q6PKG0 1096 aaKnown RBP12.27□□□□□ -0.45
SSBP4-208ENST00000600628 SEPT12Q8IYM1 358 aa12.27□□□□□ -0.45
SSBP4-208ENST00000600628 CRB1P82279 1406 aa12.27□□□□□ -0.45
SSBP4-208ENST00000600628 SRCAPQ6ZRS2 3230 aa12.26□□□□□ -0.45
SSBP4-208ENST00000600628 THRAP3Q9Y2W1 955 aaKnown RBP12.25□□□□□ -0.45
SSBP4-208ENST00000600628 WDR17Q8IZU2 1322 aa12.25□□□□□ -0.45
SSBP4-208ENST00000600628 DISP2A7MBM2 1401 aa12.25□□□□□ -0.45
SSBP4-208ENST00000600628 BLMP54132 1417 aaPredicted RBP12.24□□□□□ -0.45
SSBP4-208ENST00000600628 EVA1CP58658 441 aa12.24□□□□□ -0.45
SSBP4-208ENST00000600628 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
SSBP4-208ENST00000600628 PEAK1Q9H792 1746 aa12.24□□□□□ -0.45
SSBP4-208ENST00000600628 FAM208AQ9UK61 1670 aaKnown RBP12.24□□□□□ -0.45
SSBP4-208ENST00000600628 NSD3Q9BZ95 1437 aa12.23□□□□□ -0.45
SSBP4-208ENST00000600628 ERBB3P21860 1342 aa12.23□□□□□ -0.45
SSBP4-208ENST00000600628 TCP11L2Q8N4U5 519 aa12.23□□□□□ -0.45
SSBP4-208ENST00000600628 STRN4Q9NRL3 753 aa12.23□□□□□ -0.45
SSBP4-208ENST00000600628 LRRC37A3O60309 1634 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 KIF24Q5T7B8 1368 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 KIF7Q2M1P5 1343 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 KRT27Q7Z3Y8 459 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 CCDC125Q86Z20 511 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 IP6K1Q92551 441 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 COG3Q96JB2 828 aa12.22□□□□□ -0.45
SSBP4-208ENST00000600628 RTL1A6NKG5 1358 aa12.21□□□□□ -0.45
SSBP4-208ENST00000600628 MAP3K19Q56UN5 1328 aa12.21□□□□□ -0.45
SSBP4-208ENST00000600628 CARD10Q9BWT7 1032 aa12.21□□□□□ -0.45
SSBP4-208ENST00000600628 MAP2P11137 1827 aaKnown RBP12.21□□□□□ -0.46
SSBP4-208ENST00000600628 BCL9O00512 1426 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 TNS1Q9HBL0 1735 aaKnown RBP12.2□□□□□ -0.46
SSBP4-208ENST00000600628 A0A0G2JS52 829 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 PER1O15534 1290 aaPredicted RBP12.2□□□□□ -0.46
SSBP4-208ENST00000600628 MYT1Q01538 1121 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 GGNBP2Q9H3C7 697 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 SBF2Q86WG5 1849 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 RGPD2P0DJD1 1756 aa12.2□□□□□ -0.46
SSBP4-208ENST00000600628 CCDC7Q96M83 1385 aa12.19□□□□□ -0.46
SSBP4-208ENST00000600628 ZBTB7CA1YPR0 619 aa12.19□□□□□ -0.46
SSBP4-208ENST00000600628 FBLN1P23142 703 aa12.19□□□□□ -0.46
SSBP4-208ENST00000600628 NCAPD2Q15021 1401 aa12.19□□□□□ -0.46
SSBP4-208ENST00000600628 CGNL1Q0VF96 1302 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 RGPD1P0DJD0 1748 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 SOX12O15370 315 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 HOXC9P31274 260 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 PANK3Q9H999 370 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 USP35Q9P2H5 1018 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 NSD2O96028 1365 aa12.18□□□□□ -0.46
SSBP4-208ENST00000600628 CDCA7Q9BWT1 371 aaPredicted RBP12.17□□□□□ -0.46
SSBP4-208ENST00000600628 SMG6Q86US8 1419 aaKnown RBP12.17□□□□□ -0.46
SSBP4-208ENST00000600628 INSRP06213 1382 aa12.17□□□□□ -0.46
SSBP4-208ENST00000600628 WASHC2AQ641Q2 1341 aa12.16□□□□□ -0.46
SSBP4-208ENST00000600628 AMER1Q5JTC6 1135 aaPredicted RBP12.16□□□□□ -0.46
SSBP4-208ENST00000600628 TOM1L2Q6ZVM7 507 aa12.16□□□□□ -0.46
SSBP4-208ENST00000600628 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
SSBP4-208ENST00000600628 SHANK3Q9BYB0 1731 aa12.16□□□□□ -0.46
SSBP4-208ENST00000600628 FLT4P35916 1363 aa12.16□□□□□ -0.46
SSBP4-208ENST00000600628 TNS2Q63HR2 1409 aa12.15□□□□□ -0.46
SSBP4-208ENST00000600628 RRS1Q15050 365 aaKnown RBP12.15□□□□□ -0.46
SSBP4-208ENST00000600628 NPC1L1Q9UHC9 1359 aa12.15□□□□□ -0.46
SSBP4-208ENST00000600628 RGPD3A6NKT7 1758 aaPredicted RBP12.13□□□□□ -0.47
SSBP4-208ENST00000600628 RGPD4Q7Z3J3 1758 aa12.13□□□□□ -0.47
SSBP4-208ENST00000600628 SF3B2Q13435 895 aaKnown RBP12.13□□□□□ -0.47
SSBP4-208ENST00000600628 FAM182BQ5T319 152 aa12.13□□□□□ -0.47
SSBP4-208ENST00000600628 FAM196AQ6ZSG2 479 aa12.13□□□□□ -0.47
SSBP4-208ENST00000600628 POLKQ9UBT6 870 aa12.13□□□□□ -0.47
SSBP4-208ENST00000600628 EMILIN1Q9Y6C2 1016 aa12.13□□□□□ -0.47
SSBP4-208ENST00000600628 PDE3BQ13370 1112 aa12.12□□□□□ -0.47
SSBP4-208ENST00000600628 HSP90AB2PQ58FF8 381 aa12.12□□□□□ -0.47
SSBP4-208ENST00000600628 DEFB132Q7Z7B7 95 aa12.12□□□□□ -0.47
SSBP4-208ENST00000600628 MARCH10Q8NA82 808 aaPredicted RBP12.12□□□□□ -0.47
SSBP4-208ENST00000600628 OVOS2A0A0G2JMS6 1433 aa12.11□□□□□ -0.47
SSBP4-208ENST00000600628 RREB1Q92766 1687 aa12.11□□□□□ -0.47
SSBP4-208ENST00000600628 CSB-PGBD3P0DP91 1061 aa12.11□□□□□ -0.47
SSBP4-208ENST00000600628 DDB1Q16531 1140 aa12.11□□□□□ -0.47
SSBP4-208ENST00000600628 AMPHP49418 695 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 NBPF6Q5VWK0 638 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 NBPF4Q96M43 638 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 NLRP2Q9NX02 1062 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 PKD1L3Q7Z443 1732 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 MEGF6O75095 1541 aa12.1□□□□□ -0.47
SSBP4-208ENST00000600628 PLEKHG2Q9H7P9 1386 aa12.09□□□□□ -0.47
SSBP4-208ENST00000600628 IL2RBP14784 551 aa12.09□□□□□ -0.47
SSBP4-208ENST00000600628 POLR3GLQ9BT43 218 aa12.09□□□□□ -0.47
SSBP4-208ENST00000600628 NHSQ6T4R5 1651 aa12.09□□□□□ -0.47
SSBP4-208ENST00000600628 BAG6P46379 1132 aa12.08□□□□□ -0.48
SSBP4-208ENST00000600628 CAMKK2Q96RR4 588 aa12.08□□□□□ -0.48
SSBP4-208ENST00000600628 KNSTRNQ9Y448 316 aa12.08□□□□□ -0.48
SSBP4-208ENST00000600628 PARD3Q8TEW0 1356 aa12.07□□□□□ -0.48
SSBP4-208ENST00000600628 EXOC5O00471 708 aa12.07□□□□□ -0.48
SSBP4-208ENST00000600628 TRIM37O94972 964 aa12.07□□□□□ -0.48
SSBP4-208ENST00000600628 NUP188Q5SRE5 1749 aa12.06□□□□□ -0.48
SSBP4-208ENST00000600628 EN1Q05925 392 aaPredicted RBP12.06□□□□□ -0.48
SSBP4-208ENST00000600628 PLSCR1O15162 318 aa12.05□□□□□ -0.48
SSBP4-208ENST00000600628 EIF4A2Q14240 407 aaKnown RBP12.05□□□□□ -0.48
SSBP4-208ENST00000600628 PTF1AQ7RTS3 328 aa12.05□□□□□ -0.48
SSBP4-208ENST00000600628 LTV1Q96GA3 475 aaPredicted RBP12.05□□□□□ -0.48
SSBP4-208ENST00000600628 BCL11BQ9C0K0 894 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms