RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 USP31Q70CQ4 1352 aa25.31■■□□□ 1.64
CLIP3-206ENST00000593074 TNNQ9UQP3 1299 aa25.31■■□□□ 1.64
CLIP3-206ENST00000593074 ZKSCAN2Q63HK3 967 aa25.3■■□□□ 1.64
CLIP3-206ENST00000593074 IGHDP01880 384 aa25.29■■□□□ 1.64
CLIP3-206ENST00000593074 PEAK1Q9H792 1746 aa25.29■■□□□ 1.64
CLIP3-206ENST00000593074 SMC4Q9NTJ3 1288 aa25.28■■□□□ 1.64
CLIP3-206ENST00000593074 RGPD8O14715 1765 aaPredicted RBP25.28■■□□□ 1.64
CLIP3-206ENST00000593074 IPO9Q96P70 1041 aaKnown RBP25.27■■□□□ 1.64
CLIP3-206ENST00000593074 CHD2O14647 1828 aaKnown RBP25.27■■□□□ 1.64
CLIP3-206ENST00000593074 DLG5Q8TDM6 1919 aa25.27■■□□□ 1.64
CLIP3-206ENST00000593074 NPHP4O75161 1426 aaPredicted RBP25.27■■□□□ 1.64
CLIP3-206ENST00000593074 CALD1Q05682 793 aaKnown RBP25.27■■□□□ 1.64
CLIP3-206ENST00000593074 SSH1Q8WYL5 1049 aa25.27■■□□□ 1.64
CLIP3-206ENST00000593074 MVPQ14764 893 aaKnown RBP25.26■■□□□ 1.63
CLIP3-206ENST00000593074 RGPD1P0DJD0 1748 aa25.26■■□□□ 1.63
CLIP3-206ENST00000593074 FMN2Q9NZ56 1722 aa25.25■■□□□ 1.63
CLIP3-206ENST00000593074 ERICH6Q7L0X2 663 aa25.25■■□□□ 1.63
CLIP3-206ENST00000593074 DZIP1LQ8IYY4 767 aaKnown RBP25.25■■□□□ 1.63
CLIP3-206ENST00000593074 EIF4A2Q14240 407 aaKnown RBP25.23■■□□□ 1.63
CLIP3-206ENST00000593074 ZNF428Q96B54 188 aa25.23■■□□□ 1.63
CLIP3-206ENST00000593074 NOP58Q9Y2X3 529 aaKnown RBP25.23■■□□□ 1.63
CLIP3-206ENST00000593074 LMOD3Q0VAK6 560 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 ALDH1L2Q3SY69 923 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 FTSJ3Q8IY81 847 aaKnown RBP25.22■■□□□ 1.63
CLIP3-206ENST00000593074 PIK3C2AO00443 1686 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 KIF16BQ96L93 1317 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 TRIM27P14373 513 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 IFT57Q9NWB7 429 aa25.22■■□□□ 1.63
CLIP3-206ENST00000593074 ZNF853P0CG23 659 aa25.21■■□□□ 1.63
CLIP3-206ENST00000593074 ATF7IPQ6VMQ6 1270 aa25.21■■□□□ 1.63
CLIP3-206ENST00000593074 PCDHB15Q9Y5E8 787 aa25.21■■□□□ 1.63
CLIP3-206ENST00000593074 SOX12O15370 315 aa25.2■■□□□ 1.62
CLIP3-206ENST00000593074 RBM33Q96EV2 1170 aaKnown RBP25.2■■□□□ 1.62
CLIP3-206ENST00000593074 GNAI1P63096 354 aa25.19■■□□□ 1.62
CLIP3-206ENST00000593074 FAM161AQ3B820 660 aa25.19■■□□□ 1.62
CLIP3-206ENST00000593074 USP54Q70EL1 1684 aa25.19■■□□□ 1.62
CLIP3-206ENST00000593074 BRPF1P55201 1214 aaPredicted RBP25.19■■□□□ 1.62
CLIP3-206ENST00000593074 THUMPD2Q9BTF0 503 aaKnown RBP25.19■■□□□ 1.62
CLIP3-206ENST00000593074 NLRP6P59044 892 aa25.18■■□□□ 1.62
CLIP3-206ENST00000593074 C8orf34Q49A92 452 aa25.18■■□□□ 1.62
CLIP3-206ENST00000593074 HSP90AB2PQ58FF8 381 aa25.18■■□□□ 1.62
CLIP3-206ENST00000593074 PHF8Q9UPP1 1060 aa25.18■■□□□ 1.62
CLIP3-206ENST00000593074 RGS3P49796 1198 aa25.17■■□□□ 1.62
CLIP3-206ENST00000593074 NOB1Q9ULX3 412 aaKnown RBP25.17■■□□□ 1.62
CLIP3-206ENST00000593074 MAP3K19Q56UN5 1328 aa25.17■■□□□ 1.62
CLIP3-206ENST00000593074 ADGRL3Q9HAR2 1447 aa25.16■■□□□ 1.62
CLIP3-206ENST00000593074 SULT6B1Q6IMI4 303 aa25.16■■□□□ 1.62
CLIP3-206ENST00000593074 LAS1LQ9Y4W2 734 aaKnown RBP25.16■■□□□ 1.62
CLIP3-206ENST00000593074 IPO8O15397 1037 aaKnown RBP25.15■■□□□ 1.62
CLIP3-206ENST00000593074 AEBP1Q8IUX7 1158 aa25.15■■□□□ 1.62
CLIP3-206ENST00000593074 SBNO1A3KN83 1393 aa25.15■■□□□ 1.62
CLIP3-206ENST00000593074 VIRMAQ69YN4 1812 aaKnown RBP25.15■■□□□ 1.62
CLIP3-206ENST00000593074 NPM2Q86SE8 214 aaKnown RBP25.14■■□□□ 1.62
CLIP3-206ENST00000593074 CFAP44Q96MT7 982 aa25.14■■□□□ 1.62
CLIP3-206ENST00000593074 MBIPQ9NS73 344 aa25.14■■□□□ 1.62
CLIP3-206ENST00000593074 DDX19BQ9UMR2 479 aa25.14■■□□□ 1.62
CLIP3-206ENST00000593074 MARF1Q9Y4F3 1742 aaKnown RBP25.14■■□□□ 1.62
CLIP3-206ENST00000593074 ARHGEF10O15013 1369 aa25.14■■□□□ 1.61
CLIP3-206ENST00000593074 FLT4P35916 1363 aa25.14■■□□□ 1.61
CLIP3-206ENST00000593074 C14orf37Q86TY3 774 aa25.14■■□□□ 1.61
CLIP3-206ENST00000593074 PAK3O75914 559 aaPredicted RBP25.13■■□□□ 1.61
CLIP3-206ENST00000593074 ABTB2Q8N961 1025 aa25.13■■□□□ 1.61
CLIP3-206ENST00000593074 RWDD1Q9H446 243 aaPredicted RBP25.13■■□□□ 1.61
CLIP3-206ENST00000593074 VAMP4O75379 141 aa25.12■■□□□ 1.61
CLIP3-206ENST00000593074 AMPHP49418 695 aa25.12■■□□□ 1.61
CLIP3-206ENST00000593074 ESCO1Q5FWF5 840 aa25.1■■□□□ 1.61
CLIP3-206ENST00000593074 NUTM2GQ5VZR2 741 aa25.1■■□□□ 1.61
CLIP3-206ENST00000593074 ITPRIPQ8IWB1 547 aa25.1■■□□□ 1.61
CLIP3-206ENST00000593074 ZBTB47Q9UFB7 747 aaPredicted RBP25.1■■□□□ 1.61
CLIP3-206ENST00000593074 FAM83GA6ND36 823 aa25.09■■□□□ 1.61
CLIP3-206ENST00000593074 TMEM57Q8N5G2 664 aa25.09■■□□□ 1.61
CLIP3-206ENST00000593074 TSPYL6Q8N831 410 aa25.08■■□□□ 1.61
CLIP3-206ENST00000593074 KDRP35968 1356 aa25.08■■□□□ 1.6
CLIP3-206ENST00000593074 PSME1Q06323 249 aa25.07■■□□□ 1.6
CLIP3-206ENST00000593074 KIF24Q5T7B8 1368 aa25.07■■□□□ 1.6
CLIP3-206ENST00000593074 PROSER2Q86WR7 435 aaPredicted RBP25.07■■□□□ 1.6
CLIP3-206ENST00000593074 MRPL50Q8N5N7 158 aaKnown RBP25.07■■□□□ 1.6
CLIP3-206ENST00000593074 ARHGAP45Q92619 1136 aa25.07■■□□□ 1.6
CLIP3-206ENST00000593074 HDAC1Q13547 482 aaPredicted RBP25.06■■□□□ 1.6
CLIP3-206ENST00000593074 ZBTB40Q9NUA8 1239 aa25.05■■□□□ 1.6
CLIP3-206ENST00000593074 DCTN1Q14203 1278 aa25.05■■□□□ 1.6
CLIP3-206ENST00000593074 TWISTNBQ3B726 338 aaPredicted RBP25.05■■□□□ 1.6
CLIP3-206ENST00000593074 NWD1Q149M9 1564 aa25.04■■□□□ 1.6
CLIP3-206ENST00000593074 PDZRN3Q9UPQ7 1066 aa25.03■■□□□ 1.6
CLIP3-206ENST00000593074 IGSF1Q8N6C5 1336 aa25.03■■□□□ 1.6
CLIP3-206ENST00000593074 C8orf58Q8NAV2 365 aa25.03■■□□□ 1.6
CLIP3-206ENST00000593074 HOXC9P31274 260 aa25.01■■□□□ 1.59
CLIP3-206ENST00000593074 DDRGK1Q96HY6 314 aa25.01■■□□□ 1.59
CLIP3-206ENST00000593074 EYA1Q99502 592 aa25.01■■□□□ 1.59
CLIP3-206ENST00000593074 CHL1O00533 1208 aa25■■□□□ 1.59
CLIP3-206ENST00000593074 ORAI2Q96SN7 254 aa25■■□□□ 1.59
CLIP3-206ENST00000593074 CRB1P82279 1406 aa24.99■■□□□ 1.59
CLIP3-206ENST00000593074 ABCC4O15439 1325 aa24.99■■□□□ 1.59
CLIP3-206ENST00000593074 ELL2O00472 640 aaPredicted RBP24.98■■□□□ 1.59
CLIP3-206ENST00000593074 C19orf44Q9H6X5 657 aa24.98■■□□□ 1.59
CLIP3-206ENST00000593074 KIAA0232Q92628 1395 aa24.97■■□□□ 1.59
CLIP3-206ENST00000593074 MCM10Q7L590 875 aa24.97■■□□□ 1.59
CLIP3-206ENST00000593074 RTL1A6NKG5 1358 aa24.96■■□□□ 1.59
CLIP3-206ENST00000593074 FOXO3O43524 673 aa24.96■■□□□ 1.59
CLIP3-206ENST00000593074 SMC5Q8IY18 1101 aa24.95■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms