RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 ONECUT3O60422 494 aaPredicted RBP12.56□□□□□ -0.4
VPS25-205ENST00000590339 KRT27Q7Z3Y8 459 aa12.56□□□□□ -0.4
VPS25-205ENST00000590339 ZNF692Q9BU19 519 aaPredicted RBP12.56□□□□□ -0.4
VPS25-205ENST00000590339 SUPT16HQ9Y5B9 1047 aaKnown RBP12.56□□□□□ -0.4
VPS25-205ENST00000590339 TRPM3Q9HCF6 1732 aaPredicted RBP12.56□□□□□ -0.4
VPS25-205ENST00000590339 HDGFL2Q7Z4V5 671 aaPredicted RBP12.55□□□□□ -0.4
VPS25-205ENST00000590339 MORC1Q86VD1 984 aa12.55□□□□□ -0.4
VPS25-205ENST00000590339 FAM182BQ5T319 152 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS25-205ENST00000590339 NUDCQ9Y266 331 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 SPATA31A5Q5VU36 1347 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 TTC21BQ7Z4L5 1316 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 SPATA31A7Q8IWB4 1347 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 USP54Q70EL1 1684 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 USP6P35125 1406 aa12.54□□□□□ -0.4
VPS25-205ENST00000590339 GLI3P10071 1580 aa12.53□□□□□ -0.4
VPS25-205ENST00000590339 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
VPS25-205ENST00000590339 ZRANB1Q9UGI0 708 aa12.53□□□□□ -0.4
VPS25-205ENST00000590339 ALS2Q96Q42 1657 aa12.53□□□□□ -0.4
VPS25-205ENST00000590339 USP19O94966 1318 aa12.53□□□□□ -0.4
VPS25-205ENST00000590339 MARF1Q9Y4F3 1742 aaKnown RBP12.53□□□□□ -0.4
VPS25-205ENST00000590339 WDR43Q15061 677 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS25-205ENST00000590339 CCDC125Q86Z20 511 aa12.52□□□□□ -0.41
VPS25-205ENST00000590339 ADAMTS8Q9UP79 889 aa12.52□□□□□ -0.41
VPS25-205ENST00000590339 FYB1O15117 783 aa12.51□□□□□ -0.41
VPS25-205ENST00000590339 PDE3BQ13370 1112 aa12.51□□□□□ -0.41
VPS25-205ENST00000590339 SF3B2Q13435 895 aaKnown RBP12.51□□□□□ -0.41
VPS25-205ENST00000590339 DEFB132Q7Z7B7 95 aa12.51□□□□□ -0.41
VPS25-205ENST00000590339 SPATA31A1Q5TZJ5 1347 aa12.51□□□□□ -0.41
VPS25-205ENST00000590339 RNF123Q5XPI4 1314 aa12.5□□□□□ -0.41
VPS25-205ENST00000590339 ZNF521Q96K83 1311 aa12.5□□□□□ -0.41
VPS25-205ENST00000590339 SSH2Q76I76 1423 aa12.49□□□□□ -0.41
VPS25-205ENST00000590339 NME9Q86XW9 330 aa12.49□□□□□ -0.41
VPS25-205ENST00000590339 KCNH5Q8NCM2 988 aa12.49□□□□□ -0.41
VPS25-205ENST00000590339 MAP2P11137 1827 aaKnown RBP12.48□□□□□ -0.41
VPS25-205ENST00000590339 COL14A1Q05707 1796 aaKnown RBP12.48□□□□□ -0.41
VPS25-205ENST00000590339 ABCA3Q99758 1704 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 PLCH1Q4KWH8 1693 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 OVOS2A0A0J9YW53 1432 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 OVOS2Q6IE36 1432 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 CPDO75976 1380 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 TTC21AQ8NDW8 1320 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 NEFLP07196 543 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 TCP11L2Q8N4U5 519 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 GGNBP2Q9H3C7 697 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 AXIN2Q9Y2T1 843 aa12.48□□□□□ -0.41
VPS25-205ENST00000590339 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.48□□□□□ -0.41
VPS25-205ENST00000590339 AATKQ6ZMQ8 1374 aa12.47□□□□□ -0.41
VPS25-205ENST00000590339 CSB-PGBD3P0DP91 1061 aa12.47□□□□□ -0.41
VPS25-205ENST00000590339 MTHFSP49914 203 aa12.47□□□□□ -0.41
VPS25-205ENST00000590339 TOM1L2Q6ZVM7 507 aa12.47□□□□□ -0.41
VPS25-205ENST00000590339 PIK3C2AO00443 1686 aa12.47□□□□□ -0.41
VPS25-205ENST00000590339 CAMTA1Q9Y6Y1 1673 aa12.46□□□□□ -0.41
VPS25-205ENST00000590339 FKBP8Q14318 412 aa12.46□□□□□ -0.41
VPS25-205ENST00000590339 ARHGEF25Q86VW2 580 aa12.46□□□□□ -0.41
VPS25-205ENST00000590339 CFAP53Q96M91 514 aa12.46□□□□□ -0.41
VPS25-205ENST00000590339 NWD2Q9ULI1 1742 aa12.45□□□□□ -0.42
VPS25-205ENST00000590339 BARGINQ6ZT62 677 aa12.45□□□□□ -0.42
VPS25-205ENST00000590339 NGEFQ8N5V2 710 aa12.45□□□□□ -0.42
VPS25-205ENST00000590339 TRIM37O94972 964 aa12.44□□□□□ -0.42
VPS25-205ENST00000590339 TNNT2P45379 298 aaPredicted RBP12.44□□□□□ -0.42
VPS25-205ENST00000590339 ERICH6BQ5W0A0 696 aa12.44□□□□□ -0.42
VPS25-205ENST00000590339 PHRF1Q9P1Y6 1649 aaKnown RBP12.44□□□□□ -0.42
VPS25-205ENST00000590339 SENP3-EIF4A1A0A087X0R7 540 aa12.43□□□□□ -0.42
VPS25-205ENST00000590339 BAG6P46379 1132 aa12.43□□□□□ -0.42
VPS25-205ENST00000590339 EN1Q05925 392 aaPredicted RBP12.43□□□□□ -0.42
VPS25-205ENST00000590339 THRAP3Q9Y2W1 955 aaKnown RBP12.43□□□□□ -0.42
VPS25-205ENST00000590339 NRAPQ86VF7 1730 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 PEAK1Q9H792 1746 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 CRYBG1Q9Y4K1 1723 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 NCBP3Q53F19 620 aaKnown RBP12.42□□□□□ -0.42
VPS25-205ENST00000590339 FAM196AQ6ZSG2 479 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 RGPD1P0DJD0 1748 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 USP31Q70CQ4 1352 aa12.42□□□□□ -0.42
VPS25-205ENST00000590339 COL5A2P05997 1499 aaPredicted RBP12.41□□□□□ -0.42
VPS25-205ENST00000590339 FBLN1P23142 703 aa12.41□□□□□ -0.42
VPS25-205ENST00000590339 CCDC146Q8IYE0 955 aa12.41□□□□□ -0.42
VPS25-205ENST00000590339 WDR17Q8IZU2 1322 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 CRB1P82279 1406 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 APBA3O96018 575 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 RUNDC1Q96C34 613 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 CDCA7LQ96GN5 454 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 COG3Q96JB2 828 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 NLRP2Q9NX02 1062 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 SLIT3O75094 1523 aa12.4□□□□□ -0.42
VPS25-205ENST00000590339 BRWD3Q6RI45 1802 aa12.39□□□□□ -0.43
VPS25-205ENST00000590339 APAF1O14727 1248 aa12.39□□□□□ -0.43
VPS25-205ENST00000590339 EZH2Q15910 746 aaKnown RBP12.39□□□□□ -0.43
VPS25-205ENST00000590339 DDB1Q16531 1140 aa12.39□□□□□ -0.43
VPS25-205ENST00000590339 TRMT2AQ8IZ69 625 aaKnown RBP12.39□□□□□ -0.43
VPS25-205ENST00000590339 LTV1Q96GA3 475 aaPredicted RBP12.39□□□□□ -0.43
VPS25-205ENST00000590339 CARD10Q9BWT7 1032 aa12.39□□□□□ -0.43
VPS25-205ENST00000590339 POLKQ9UBT6 870 aa12.39□□□□□ -0.43
VPS25-205ENST00000590339 SALL2Q9Y467 1007 aaPredicted RBP12.39□□□□□ -0.43
VPS25-205ENST00000590339 ANKRD24Q8TF21 1146 aa12.38□□□□□ -0.43
VPS25-205ENST00000590339 PSDA5PKW4 1024 aaPredicted RBP12.37□□□□□ -0.43
VPS25-205ENST00000590339 EXOC5O00471 708 aa12.37□□□□□ -0.43
VPS25-205ENST00000590339 GOLGA2Q08379 1002 aa12.37□□□□□ -0.43
VPS25-205ENST00000590339 DUSP27Q5VZP5 1158 aa12.37□□□□□ -0.43
VPS25-205ENST00000590339 LMO7Q8WWI1 1683 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms