RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OVOS2A0A0J9YW53 1432 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 CRB1P82279 1406 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 OVOS2Q6IE36 1432 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 BARGINQ6ZT62 677 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 CCDC125Q86Z20 511 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 TCP11L2Q8N4U5 519 aa33.31■■■□□ 2.92
SHMT1-206ENST00000579558 RGPD5Q99666 1765 aa33.29■■■□□ 2.92
SHMT1-206ENST00000579558 THRAP3Q9Y2W1 955 aaKnown RBP33.28■■■□□ 2.92
SHMT1-206ENST00000579558 MYOM1P52179 1685 aa33.28■■■□□ 2.92
SHMT1-206ENST00000579558 ABCC6O95255 1503 aa33.28■■■□□ 2.92
SHMT1-206ENST00000579558 HSPA5P11021 654 aaKnown RBP33.27■■■□□ 2.92
SHMT1-206ENST00000579558 BLMP54132 1417 aaPredicted RBP33.27■■■□□ 2.92
SHMT1-206ENST00000579558 TOM1L2Q6ZVM7 507 aa33.26■■■□□ 2.91
SHMT1-206ENST00000579558 LTN1O94822 1766 aa33.26■■■□□ 2.91
SHMT1-206ENST00000579558 WDR17Q8IZU2 1322 aa33.26■■■□□ 2.91
SHMT1-206ENST00000579558 COG3Q96JB2 828 aa33.24■■■□□ 2.91
SHMT1-206ENST00000579558 CSB-PGBD3P0DP91 1061 aa33.22■■■□□ 2.91
SHMT1-206ENST00000579558 FAM182BQ5T319 152 aa33.22■■■□□ 2.91
SHMT1-206ENST00000579558 POLR3GLQ9BT43 218 aa33.2■■■□□ 2.91
SHMT1-206ENST00000579558 SF3B2Q13435 895 aaKnown RBP33.19■■■□□ 2.9
SHMT1-206ENST00000579558 PARP4Q9UKK3 1724 aaKnown RBP33.17■■■□□ 2.9
SHMT1-206ENST00000579558 PDE3BQ13370 1112 aa33.17■■■□□ 2.9
SHMT1-206ENST00000579558 FYB1O15117 783 aa33.16■■■□□ 2.9
SHMT1-206ENST00000579558 GGNBP2Q9H3C7 697 aa33.16■■■□□ 2.9
SHMT1-206ENST00000579558 KIF20BQ96Q89 1820 aa33.16■■■□□ 2.9
SHMT1-206ENST00000579558 WNK3Q9BYP7 1800 aa33.14■■■□□ 2.9
SHMT1-206ENST00000579558 NSD3Q9BZ95 1437 aa33.14■■■□□ 2.9
SHMT1-206ENST00000579558 CARD10Q9BWT7 1032 aa33.14■■■□□ 2.9
SHMT1-206ENST00000579558 CARD14Q9BXL6 1004 aa33.14■■■□□ 2.9
SHMT1-206ENST00000579558 ERBB3P21860 1342 aa33.12■■■□□ 2.89
SHMT1-206ENST00000579558 FAM196AQ6ZSG2 479 aa33.11■■■□□ 2.89
SHMT1-206ENST00000579558 RGPD1P0DJD0 1748 aa33.11■■■□□ 2.89
SHMT1-206ENST00000579558 DEFB132Q7Z7B7 95 aa33.1■■■□□ 2.89
SHMT1-206ENST00000579558 LRRC37A3O60309 1634 aa33.1■■■□□ 2.89
SHMT1-206ENST00000579558 CCDC7Q96M83 1385 aa33.09■■■□□ 2.89
SHMT1-206ENST00000579558 MAP3K19Q56UN5 1328 aa33.09■■■□□ 2.89
SHMT1-206ENST00000579558 ANKRD24Q8TF21 1146 aa33.09■■■□□ 2.89
SHMT1-206ENST00000579558 IP6K1Q92551 441 aa33.09■■■□□ 2.89
SHMT1-206ENST00000579558 FBLN1P23142 703 aa33.08■■■□□ 2.89
SHMT1-206ENST00000579558 CDCA7Q9BWT1 371 aaPredicted RBP33.08■■■□□ 2.89
SHMT1-206ENST00000579558 NLRP2Q9NX02 1062 aa33.07■■■□□ 2.88
SHMT1-206ENST00000579558 DDB1Q16531 1140 aa33.06■■■□□ 2.88
SHMT1-206ENST00000579558 BAG6P46379 1132 aa33.05■■■□□ 2.88
SHMT1-206ENST00000579558 AMPHP49418 695 aa33.05■■■□□ 2.88
SHMT1-206ENST00000579558 DISP2A7MBM2 1401 aa33.04■■■□□ 2.88
SHMT1-206ENST00000579558 TNS1Q9HBL0 1735 aaKnown RBP33.03■■■□□ 2.88
SHMT1-206ENST00000579558 SRCAPQ6ZRS2 3230 aa33.03■■■□□ 2.88
SHMT1-206ENST00000579558 TRIM37O94972 964 aa33.02■■■□□ 2.88
SHMT1-206ENST00000579558 HOXC9P31274 260 aa33.02■■■□□ 2.88
SHMT1-206ENST00000579558 RRS1Q15050 365 aaKnown RBP33.02■■■□□ 2.88
SHMT1-206ENST00000579558 LTV1Q96GA3 475 aaPredicted RBP33.01■■■□□ 2.87
SHMT1-206ENST00000579558 CGNL1Q0VF96 1302 aa33.01■■■□□ 2.87
SHMT1-206ENST00000579558 RTL1A6NKG5 1358 aa33■■■□□ 2.87
SHMT1-206ENST00000579558 C11orf95C9JLR9 678 aaPredicted RBP33■■■□□ 2.87
SHMT1-206ENST00000579558 FAM208AQ9UK61 1670 aaKnown RBP33■■■□□ 2.87
SHMT1-206ENST00000579558 OVOS2A0A0G2JMS6 1433 aa32.99■■■□□ 2.87
SHMT1-206ENST00000579558 PEAK1Q9H792 1746 aa32.97■■■□□ 2.87
SHMT1-206ENST00000579558 EXOC5O00471 708 aa32.95■■■□□ 2.87
SHMT1-206ENST00000579558 PANK3Q9H999 370 aa32.95■■■□□ 2.87
SHMT1-206ENST00000579558 EN1Q05925 392 aaPredicted RBP32.94■■■□□ 2.86
SHMT1-206ENST00000579558 IL2RBP14784 551 aa32.93■■■□□ 2.86
SHMT1-206ENST00000579558 MARCH10Q8NA82 808 aaPredicted RBP32.93■■■□□ 2.86
SHMT1-206ENST00000579558 TNS2Q63HR2 1409 aa32.93■■■□□ 2.86
SHMT1-206ENST00000579558 APBA3O96018 575 aa32.91■■■□□ 2.86
SHMT1-206ENST00000579558 ANKRD26Q9UPS8 1709 aa32.89■■■□□ 2.86
SHMT1-206ENST00000579558 FLT4P35916 1363 aa32.89■■■□□ 2.86
SHMT1-206ENST00000579558 KIF24Q5T7B8 1368 aa32.89■■■□□ 2.86
SHMT1-206ENST00000579558 KIF7Q2M1P5 1343 aa32.89■■■□□ 2.86
SHMT1-206ENST00000579558 RGPD2P0DJD1 1756 aa32.88■■■□□ 2.85
SHMT1-206ENST00000579558 SMG6Q86US8 1419 aaKnown RBP32.88■■■□□ 2.85
SHMT1-206ENST00000579558 SBF2Q86WG5 1849 aa32.88■■■□□ 2.85
SHMT1-206ENST00000579558 INSRP06213 1382 aa32.86■■■□□ 2.85
SHMT1-206ENST00000579558 HSP90AB2PQ58FF8 381 aa32.86■■■□□ 2.85
SHMT1-206ENST00000579558 EMILIN1Q9Y6C2 1016 aa32.86■■■□□ 2.85
SHMT1-206ENST00000579558 EZH2Q15910 746 aaKnown RBP32.85■■■□□ 2.85
SHMT1-206ENST00000579558 BCL9O00512 1426 aa32.85■■■□□ 2.85
SHMT1-206ENST00000579558 CAMKK2Q96RR4 588 aa32.83■■■□□ 2.85
SHMT1-206ENST00000579558 MAP2P11137 1827 aaKnown RBP32.82■■■□□ 2.84
SHMT1-206ENST00000579558 PPM1GO15355 546 aaPredicted RBP32.82■■■□□ 2.84
SHMT1-206ENST00000579558 NSD2O96028 1365 aa32.81■■■□□ 2.84
SHMT1-206ENST00000579558 PARD3Q8TEW0 1356 aa32.81■■■□□ 2.84
SHMT1-206ENST00000579558 NBPF6Q5VWK0 638 aa32.8■■■□□ 2.84
SHMT1-206ENST00000579558 NBPF4Q96M43 638 aa32.8■■■□□ 2.84
SHMT1-206ENST00000579558 TNNT2P45379 298 aaPredicted RBP32.79■■■□□ 2.84
SHMT1-206ENST00000579558 BCL11BQ9C0K0 894 aaPredicted RBP32.78■■■□□ 2.84
SHMT1-206ENST00000579558 KNSTRNQ9Y448 316 aa32.78■■■□□ 2.84
SHMT1-206ENST00000579558 USHBP1Q8N6Y0 703 aa32.77■■■□□ 2.84
SHMT1-206ENST00000579558 POLKQ9UBT6 870 aa32.76■■■□□ 2.83
SHMT1-206ENST00000579558 PTF1AQ7RTS3 328 aa32.75■■■□□ 2.83
SHMT1-206ENST00000579558 MEGF6O75095 1541 aa32.75■■■□□ 2.83
SHMT1-206ENST00000579558 RREB1Q92766 1687 aa32.75■■■□□ 2.83
SHMT1-206ENST00000579558 WASHC2AQ641Q2 1341 aa32.74■■■□□ 2.83
SHMT1-206ENST00000579558 DDX54Q8TDD1 881 aaKnown RBP32.72■■■□□ 2.83
SHMT1-206ENST00000579558 MORC1Q86VD1 984 aa32.71■■■□□ 2.83
SHMT1-206ENST00000579558 RAPGEF4Q8WZA2 1011 aa32.71■■■□□ 2.83
SHMT1-206ENST00000579558 NHSQ6T4R5 1651 aa32.71■■■□□ 2.83
SHMT1-206ENST00000579558 RGPD3A6NKT7 1758 aaPredicted RBP32.7■■■□□ 2.83
SHMT1-206ENST00000579558 RGPD4Q7Z3J3 1758 aa32.7■■■□□ 2.83
SHMT1-206ENST00000579558 ACSBG1Q96GR2 724 aa32.7■■■□□ 2.83
SHMT1-206ENST00000579558 NUP188Q5SRE5 1749 aa32.7■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms