RNA–Protein interactions for RNA: ENST00000574163.1

NDE1-210, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-210ENST00000574163 NSD3Q9BZ95 1437 aa13.57□□□□□ -0.24
NDE1-210ENST00000574163 FAM208AQ9UK61 1670 aaKnown RBP13.57□□□□□ -0.24
NDE1-210ENST00000574163 CHRNA2Q15822 529 aa13.57□□□□□ -0.24
NDE1-210ENST00000574163 SPATA31A5Q5VU36 1347 aa13.57□□□□□ -0.24
NDE1-210ENST00000574163 SPATA31A7Q8IWB4 1347 aa13.57□□□□□ -0.24
NDE1-210ENST00000574163 RGPD5Q99666 1765 aa13.56□□□□□ -0.24
NDE1-210ENST00000574163 BRWD3Q6RI45 1802 aa13.56□□□□□ -0.24
NDE1-210ENST00000574163 ARHGEF25Q86VW2 580 aa13.56□□□□□ -0.24
NDE1-210ENST00000574163 COG3Q96JB2 828 aa13.54□□□□□ -0.24
NDE1-210ENST00000574163 ZRANB1Q9UGI0 708 aa13.54□□□□□ -0.24
NDE1-210ENST00000574163 BLMP54132 1417 aaPredicted RBP13.54□□□□□ -0.24
NDE1-210ENST00000574163 CRB1P82279 1406 aa13.54□□□□□ -0.24
NDE1-210ENST00000574163 PARP4Q9UKK3 1724 aaKnown RBP13.53□□□□□ -0.24
NDE1-210ENST00000574163 ONECUT3O60422 494 aaPredicted RBP13.53□□□□□ -0.24
NDE1-210ENST00000574163 CCDC9Q9Y3X0 531 aaKnown RBP13.53□□□□□ -0.24
NDE1-210ENST00000574163 SPATA31A1Q5TZJ5 1347 aa13.53□□□□□ -0.24
NDE1-210ENST00000574163 EP400Q96L91 3159 aa13.53□□□□□ -0.24
NDE1-210ENST00000574163 RTL1A6NKG5 1358 aa13.53□□□□□ -0.24
NDE1-210ENST00000574163 CARD14Q9BXL6 1004 aa13.52□□□□□ -0.25
NDE1-210ENST00000574163 CGNL1Q0VF96 1302 aa13.52□□□□□ -0.25
NDE1-210ENST00000574163 NSD2O96028 1365 aa13.52□□□□□ -0.25
NDE1-210ENST00000574163 KIF24Q5T7B8 1368 aa13.51□□□□□ -0.25
NDE1-210ENST00000574163 KIF7Q2M1P5 1343 aa13.51□□□□□ -0.25
NDE1-210ENST00000574163 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
NDE1-210ENST00000574163 FYB1O15117 783 aa13.51□□□□□ -0.25
NDE1-210ENST00000574163 SOX12O15370 315 aa13.5□□□□□ -0.25
NDE1-210ENST00000574163 EVA1CP58658 441 aa13.5□□□□□ -0.25
NDE1-210ENST00000574163 BARGINQ6ZT62 677 aa13.5□□□□□ -0.25
NDE1-210ENST00000574163 STRN4Q9NRL3 753 aa13.5□□□□□ -0.25
NDE1-210ENST00000574163 THRAP3Q9Y2W1 955 aaKnown RBP13.5□□□□□ -0.25
NDE1-210ENST00000574163 LRRC37A3O60309 1634 aa13.5□□□□□ -0.25
NDE1-210ENST00000574163 CCDC7Q96M83 1385 aa13.49□□□□□ -0.25
NDE1-210ENST00000574163 C11orf95C9JLR9 678 aaPredicted RBP13.49□□□□□ -0.25
NDE1-210ENST00000574163 LARP1Q6PKG0 1096 aaKnown RBP13.49□□□□□ -0.25
NDE1-210ENST00000574163 SEPT12Q8IYM1 358 aa13.49□□□□□ -0.25
NDE1-210ENST00000574163 POLR3GLQ9BT43 218 aa13.49□□□□□ -0.25
NDE1-210ENST00000574163 ERBB3P21860 1342 aa13.48□□□□□ -0.25
NDE1-210ENST00000574163 ZBTB7CA1YPR0 619 aa13.48□□□□□ -0.25
NDE1-210ENST00000574163 FAM98CQ17RN3 349 aaKnown RBP13.48□□□□□ -0.25
NDE1-210ENST00000574163 TCP11L2Q8N4U5 519 aa13.48□□□□□ -0.25
NDE1-210ENST00000574163 GGNBP2Q9H3C7 697 aa13.48□□□□□ -0.25
NDE1-210ENST00000574163 AXIN2Q9Y2T1 843 aa13.48□□□□□ -0.25
NDE1-210ENST00000574163 PEAK1Q9H792 1746 aa13.47□□□□□ -0.25
NDE1-210ENST00000574163 MAP3K19Q56UN5 1328 aa13.47□□□□□ -0.25
NDE1-210ENST00000574163 DISP2A7MBM2 1401 aa13.47□□□□□ -0.25
NDE1-210ENST00000574163 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
NDE1-210ENST00000574163 IP6K1Q92551 441 aa13.46□□□□□ -0.25
NDE1-210ENST00000574163 PANK3Q9H999 370 aa13.46□□□□□ -0.25
NDE1-210ENST00000574163 FLT4P35916 1363 aa13.45□□□□□ -0.26
NDE1-210ENST00000574163 CARD10Q9BWT7 1032 aa13.45□□□□□ -0.26
NDE1-210ENST00000574163 MAP2P11137 1827 aaKnown RBP13.45□□□□□ -0.26
NDE1-210ENST00000574163 SMG6Q86US8 1419 aaKnown RBP13.45□□□□□ -0.26
NDE1-210ENST00000574163 RGPD1P0DJD0 1748 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 WASHC2AQ641Q2 1341 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 A0A0G2JS52 829 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 MYT1Q01538 1121 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 TOM1L2Q6ZVM7 507 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 KRT27Q7Z3Y8 459 aa13.44□□□□□ -0.26
NDE1-210ENST00000574163 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
NDE1-210ENST00000574163 CDCA7Q9BWT1 371 aaPredicted RBP13.44□□□□□ -0.26
NDE1-210ENST00000574163 CSB-PGBD3P0DP91 1061 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 HOXC9P31274 260 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 TNS2Q63HR2 1409 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 ANKRD24Q8TF21 1146 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 INSRP06213 1382 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 NPC1L1Q9UHC9 1359 aa13.43□□□□□ -0.26
NDE1-210ENST00000574163 AMPHP49418 695 aa13.42□□□□□ -0.26
NDE1-210ENST00000574163 USP35Q9P2H5 1018 aa13.42□□□□□ -0.26
NDE1-210ENST00000574163 KNSTRNQ9Y448 316 aa13.42□□□□□ -0.26
NDE1-210ENST00000574163 TNS1Q9HBL0 1735 aaKnown RBP13.42□□□□□ -0.26
NDE1-210ENST00000574163 RGPD2P0DJD1 1756 aa13.41□□□□□ -0.26
NDE1-210ENST00000574163 CCDC125Q86Z20 511 aa13.41□□□□□ -0.26
NDE1-210ENST00000574163 NCAPD2Q15021 1401 aa13.4□□□□□ -0.26
NDE1-210ENST00000574163 ZEB1P37275 1124 aaPredicted RBP13.4□□□□□ -0.26
NDE1-210ENST00000574163 RRS1Q15050 365 aaKnown RBP13.4□□□□□ -0.26
NDE1-210ENST00000574163 AMER1Q5JTC6 1135 aaPredicted RBP13.4□□□□□ -0.26
NDE1-210ENST00000574163 OVOS2A0A0G2JMS6 1433 aa13.39□□□□□ -0.27
NDE1-210ENST00000574163 BCL9O00512 1426 aa13.39□□□□□ -0.27
NDE1-210ENST00000574163 NLRP2Q9NX02 1062 aa13.38□□□□□ -0.27
NDE1-210ENST00000574163 SBF2Q86WG5 1849 aa13.38□□□□□ -0.27
NDE1-210ENST00000574163 PER1O15534 1290 aaPredicted RBP13.37□□□□□ -0.27
NDE1-210ENST00000574163 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
NDE1-210ENST00000574163 FBLN1P23142 703 aa13.37□□□□□ -0.27
NDE1-210ENST00000574163 PDE3BQ13370 1112 aa13.37□□□□□ -0.27
NDE1-210ENST00000574163 EMILIN1Q9Y6C2 1016 aa13.37□□□□□ -0.27
NDE1-210ENST00000574163 RGPD3A6NKT7 1758 aaPredicted RBP13.37□□□□□ -0.27
NDE1-210ENST00000574163 RGPD4Q7Z3J3 1758 aa13.37□□□□□ -0.27
NDE1-210ENST00000574163 SHANK3Q9BYB0 1731 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 PLEKHG2Q9H7P9 1386 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 DDB1Q16531 1140 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 FAM196AQ6ZSG2 479 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 POLKQ9UBT6 870 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 PKD1L3Q7Z443 1732 aa13.36□□□□□ -0.27
NDE1-210ENST00000574163 IL2RBP14784 551 aa13.35□□□□□ -0.27
NDE1-210ENST00000574163 MORC1Q86VD1 984 aa13.35□□□□□ -0.27
NDE1-210ENST00000574163 NHSQ6T4R5 1651 aa13.34□□□□□ -0.27
NDE1-210ENST00000574163 MEGF6O75095 1541 aa13.34□□□□□ -0.27
NDE1-210ENST00000574163 HSP90AB2PQ58FF8 381 aa13.34□□□□□ -0.27
NDE1-210ENST00000574163 LTV1Q96GA3 475 aaPredicted RBP13.34□□□□□ -0.27
NDE1-210ENST00000574163 SF3B2Q13435 895 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms