RNA–Protein interactions for RNA: ENST00000574163.1

NDE1-210, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-210ENST00000574163 NISCHQ9Y2I1 1504 aa23.94■■□□□ 1.42
NDE1-210ENST00000574163 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
NDE1-210ENST00000574163 AEBP2Q6ZN18 517 aaPredicted RBP20.92■□□□□ 0.94
NDE1-210ENST00000574163 ABCC9O60706 1549 aa20.73■□□□□ 0.91
NDE1-210ENST00000574163 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
NDE1-210ENST00000574163 RB1CC1Q8TDY2 1594 aa20.07■□□□□ 0.8
NDE1-210ENST00000574163 NACADO15069 1562 aa20.06■□□□□ 0.8
NDE1-210ENST00000574163 MYO15BQ96JP2 1530 aa19.99■□□□□ 0.79
NDE1-210ENST00000574163 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
NDE1-210ENST00000574163 DCAF1Q9Y4B6 1507 aa19.9■□□□□ 0.78
NDE1-210ENST00000574163 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
NDE1-210ENST00000574163 UNC13AQ9UPW8 1703 aa19.62■□□□□ 0.73
NDE1-210ENST00000574163 BICRAQ9NZM4 1560 aa19.44■□□□□ 0.7
NDE1-210ENST00000574163 SCRIBQ14160 1630 aa19.4■□□□□ 0.7
NDE1-210ENST00000574163 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
NDE1-210ENST00000574163 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
NDE1-210ENST00000574163 DNAJC5BQ9UF47 199 aa18.92■□□□□ 0.62
NDE1-210ENST00000574163 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
NDE1-210ENST00000574163 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
NDE1-210ENST00000574163 CECR2Q9BXF3 1484 aa18.67■□□□□ 0.58
NDE1-210ENST00000574163 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
NDE1-210ENST00000574163 BAZ1AQ9NRL2 1556 aaPredicted RBP18.59■□□□□ 0.57
NDE1-210ENST00000574163 SMARCA2P51531 1590 aa18.5■□□□□ 0.55
NDE1-210ENST00000574163 PEG3Q9GZU2 1588 aa18.47■□□□□ 0.55
NDE1-210ENST00000574163 NCAPD3P42695 1498 aa18.46■□□□□ 0.55
NDE1-210ENST00000574163 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.54
NDE1-210ENST00000574163 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
NDE1-210ENST00000574163 MROH2BQ7Z745 1585 aa18.41■□□□□ 0.54
NDE1-210ENST00000574163 BAZ1BQ9UIG0 1483 aaKnown RBP18.31■□□□□ 0.52
NDE1-210ENST00000574163 PHF23Q9BUL5 403 aaPredicted RBP18.29■□□□□ 0.52
NDE1-210ENST00000574163 WIZO95785 1651 aa18.22■□□□□ 0.51
NDE1-210ENST00000574163 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
NDE1-210ENST00000574163 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
NDE1-210ENST00000574163 LAMC3Q9Y6N6 1575 aa18.02■□□□□ 0.48
NDE1-210ENST00000574163 NESP48681 1621 aa17.94■□□□□ 0.46
NDE1-210ENST00000574163 ERCC6Q03468 1493 aa17.91■□□□□ 0.46
NDE1-210ENST00000574163 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
NDE1-210ENST00000574163 PDS5BQ9NTI5 1447 aa17.84■□□□□ 0.45
NDE1-210ENST00000574163 KIF21AQ7Z4S6 1674 aa17.82■□□□□ 0.44
NDE1-210ENST00000574163 CFTRP13569 1480 aa17.82■□□□□ 0.44
NDE1-210ENST00000574163 PRDM2Q13029 1718 aa17.81■□□□□ 0.44
NDE1-210ENST00000574163 CUX2O14529 1486 aa17.8■□□□□ 0.44
NDE1-210ENST00000574163 THOC2Q8NI27 1593 aaKnown RBP17.79■□□□□ 0.44
NDE1-210ENST00000574163 CCDC88BA6NC98 1476 aa17.79■□□□□ 0.44
NDE1-210ENST00000574163 CEP164Q9UPV0 1460 aa17.7■□□□□ 0.42
NDE1-210ENST00000574163 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
NDE1-210ENST00000574163 MRC2Q9UBG0 1479 aa17.68■□□□□ 0.42
NDE1-210ENST00000574163 WDR62O43379 1518 aa17.65■□□□□ 0.42
NDE1-210ENST00000574163 SENP3Q9H4L4 574 aaPredicted RBP17.61■□□□□ 0.41
NDE1-210ENST00000574163 SUPT5HO00267 1087 aaKnown RBP17.57■□□□□ 0.4
NDE1-210ENST00000574163 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
NDE1-210ENST00000574163 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
NDE1-210ENST00000574163 DNMBPQ6XZF7 1577 aa17.45■□□□□ 0.38
NDE1-210ENST00000574163 TOPBP1Q92547 1522 aa17.42■□□□□ 0.38
NDE1-210ENST00000574163 IFT140Q96RY7 1462 aa17.33■□□□□ 0.37
NDE1-210ENST00000574163 CUX1P39880 1505 aa17.29■□□□□ 0.36
NDE1-210ENST00000574163 POLA1P09884 1462 aaPredicted RBP17.28■□□□□ 0.36
NDE1-210ENST00000574163 TARBP1Q13395 1621 aaKnown RBP17.27■□□□□ 0.36
NDE1-210ENST00000574163 WDR97A6NE52 1622 aa17.23■□□□□ 0.35
NDE1-210ENST00000574163 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
NDE1-210ENST00000574163 EIF4G3O43432 1585 aaKnown RBP17.21■□□□□ 0.35
NDE1-210ENST00000574163 BIVM-ERCC5R4GMW8 1640 aa17.21■□□□□ 0.35
NDE1-210ENST00000574163 ZNF608Q9ULD9 1512 aaPredicted RBP17.19■□□□□ 0.34
NDE1-210ENST00000574163 TOP2BQ02880 1626 aa17.18■□□□□ 0.34
NDE1-210ENST00000574163 WRNQ14191 1432 aaPredicted RBP eCLIP17.17■□□□□ 0.34
NDE1-210ENST00000574163 SOGA1O94964 1423 aa17.15■□□□□ 0.34
NDE1-210ENST00000574163 SYNJ1O43426 1573 aa17.15■□□□□ 0.34
NDE1-210ENST00000574163 RAD54L2Q9Y4B4 1467 aa17.13■□□□□ 0.33
NDE1-210ENST00000574163 DNAJC5Q9H3Z4 198 aa17.11■□□□□ 0.33
NDE1-210ENST00000574163 ABCA10Q8WWZ4 1543 aa17.1■□□□□ 0.33
NDE1-210ENST00000574163 ABCA5Q8WWZ7 1642 aa17.07■□□□□ 0.32
NDE1-210ENST00000574163 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.321e-6■■□□□ 12.2
NDE1-210ENST00000574163 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
NDE1-210ENST00000574163 GRIN2BQ13224 1484 aa17.01■□□□□ 0.31
NDE1-210ENST00000574163 TDRD9Q8NDG6 1382 aaKnown RBP17.01■□□□□ 0.31
NDE1-210ENST00000574163 MAGI1Q96QZ7 1491 aaPredicted RBP17■□□□□ 0.31
NDE1-210ENST00000574163 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
NDE1-210ENST00000574163 CHD1O14646 1710 aa16.99■□□□□ 0.31
NDE1-210ENST00000574163 SNAPC4Q5SXM2 1469 aa16.97■□□□□ 0.31
NDE1-210ENST00000574163 PLPPR3Q6T4P5 718 aa16.94■□□□□ 0.3
NDE1-210ENST00000574163 ERICH3Q5RHP9 1530 aa16.91■□□□□ 0.3
NDE1-210ENST00000574163 OSCARQ8IYS5 282 aa16.91■□□□□ 0.3
NDE1-210ENST00000574163 SYNJ2O15056 1496 aa16.91■□□□□ 0.3
NDE1-210ENST00000574163 ADAMTS12P58397 1594 aa16.9■□□□□ 0.3
NDE1-210ENST00000574163 CLASP1Q7Z460 1538 aa16.82■□□□□ 0.28
NDE1-210ENST00000574163 FHAD1B1AJZ9 1412 aa16.81■□□□□ 0.28
NDE1-210ENST00000574163 KIF27Q86VH2 1401 aa16.81■□□□□ 0.28
NDE1-210ENST00000574163 GRIN2AQ12879 1464 aa16.8■□□□□ 0.28
NDE1-210ENST00000574163 CUL7Q14999 1698 aa16.79■□□□□ 0.28
NDE1-210ENST00000574163 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
NDE1-210ENST00000574163 FBLN2P98095 1184 aa16.77■□□□□ 0.28
NDE1-210ENST00000574163 RIMBP3CA6NJZ7 1639 aa16.74■□□□□ 0.27
NDE1-210ENST00000574163 RIMBP3BA6NNM3 1639 aa16.74■□□□□ 0.27
NDE1-210ENST00000574163 RIMBP3Q9UFD9 1639 aa16.74■□□□□ 0.27
NDE1-210ENST00000574163 ARHGEF11O15085 1522 aa16.74■□□□□ 0.27
NDE1-210ENST00000574163 NUP160Q12769 1436 aa16.73■□□□□ 0.27
NDE1-210ENST00000574163 CEP170Q5SW79 1584 aa16.72■□□□□ 0.27
NDE1-210ENST00000574163 IGF1RP08069 1367 aa16.69■□□□□ 0.26
NDE1-210ENST00000574163 SHROOM2Q13796 1616 aa16.66■□□□□ 0.26
NDE1-210ENST00000574163 RUSC2Q8N2Y8 1516 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms