RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 UBAP1LF5GYI3 381 aa18.12■□□□□ 0.49
CCDC40-209ENST00000573474 NGEFQ8N5V2 710 aa18.12■□□□□ 0.49
CCDC40-209ENST00000573474 LRRC59Q96AG4 307 aaKnown RBP18.12■□□□□ 0.49
CCDC40-209ENST00000573474 APAF1O14727 1248 aa18.1■□□□□ 0.49
CCDC40-209ENST00000573474 CABLES1Q8TDN4 633 aa18.1■□□□□ 0.49
CCDC40-209ENST00000573474 SENP3-EIF4A1A0A087X0R7 540 aa18.09■□□□□ 0.49
CCDC40-209ENST00000573474 ZBTB7CA1YPR0 619 aa18.09■□□□□ 0.49
CCDC40-209ENST00000573474 ZC3H6P61129 1189 aaKnown RBP18.09■□□□□ 0.49
CCDC40-209ENST00000573474 PIP4K2BP78356 416 aa18.09■□□□□ 0.49
CCDC40-209ENST00000573474 PLEKHF1Q96S99 279 aa18.09■□□□□ 0.49
CCDC40-209ENST00000573474 PHRF1Q9P1Y6 1649 aaKnown RBP18.09■□□□□ 0.49
CCDC40-209ENST00000573474 RSPH6AQ9H0K4 717 aa18.08■□□□□ 0.48
CCDC40-209ENST00000573474 SALL2Q9Y467 1007 aaPredicted RBP18.08■□□□□ 0.48
CCDC40-209ENST00000573474 LTN1O94822 1766 aa18.08■□□□□ 0.48
CCDC40-209ENST00000573474 NCBP3Q53F19 620 aaKnown RBP18.07■□□□□ 0.48
CCDC40-209ENST00000573474 TCP11L2Q8N4U5 519 aa18.07■□□□□ 0.48
CCDC40-209ENST00000573474 CPDO75976 1380 aa18.06■□□□□ 0.48
CCDC40-209ENST00000573474 MAPK8IP3Q9UPT6 1336 aa18.06■□□□□ 0.48
CCDC40-209ENST00000573474 NEFMP07197 916 aa18.06■□□□□ 0.48
CCDC40-209ENST00000573474 HMOX1P09601 288 aa18.06■□□□□ 0.48
CCDC40-209ENST00000573474 PRKAR2BP31323 418 aa18.05■□□□□ 0.48
CCDC40-209ENST00000573474 HAP1P54257 671 aaPredicted RBP18.05■□□□□ 0.48
CCDC40-209ENST00000573474 PDE3BQ13370 1112 aa18.05■□□□□ 0.48
CCDC40-209ENST00000573474 SULT6B1Q6IMI4 303 aa18.05■□□□□ 0.48
CCDC40-209ENST00000573474 LTV1Q96GA3 475 aaPredicted RBP18.05■□□□□ 0.48
CCDC40-209ENST00000573474 EYA1Q99502 592 aa18.05■□□□□ 0.48
CCDC40-209ENST00000573474 CRYBG1Q9Y4K1 1723 aa18.05■□□□□ 0.48
CCDC40-209ENST00000573474 IGSF1Q8N6C5 1336 aa18.04■□□□□ 0.48
CCDC40-209ENST00000573474 RGPD1P0DJD0 1748 aa18.03■□□□□ 0.48
CCDC40-209ENST00000573474 KIAA0232Q92628 1395 aa18.03■□□□□ 0.48
CCDC40-209ENST00000573474 ABCC6O95255 1503 aa18.03■□□□□ 0.48
CCDC40-209ENST00000573474 PHLPP1O60346 1717 aa18.02■□□□□ 0.48
CCDC40-209ENST00000573474 AEBP1Q8IUX7 1158 aa18.02■□□□□ 0.48
CCDC40-209ENST00000573474 ANKRD24Q8TF21 1146 aa18.02■□□□□ 0.48
CCDC40-209ENST00000573474 AXIN2Q9Y2T1 843 aa18.02■□□□□ 0.48
CCDC40-209ENST00000573474 TMPOP42166 694 aaKnown RBP18.01■□□□□ 0.47
CCDC40-209ENST00000573474 CCDC27Q2M243 656 aa18.01■□□□□ 0.47
CCDC40-209ENST00000573474 KDRP35968 1356 aa18.01■□□□□ 0.47
CCDC40-209ENST00000573474 ZNF521Q96K83 1311 aa18■□□□□ 0.47
CCDC40-209ENST00000573474 PHACTR3Q96KR7 559 aa18■□□□□ 0.47
CCDC40-209ENST00000573474 PRDM11Q9NQV5 511 aa18■□□□□ 0.47
CCDC40-209ENST00000573474 RRP7AQ9Y3A4 280 aaKnown RBP18■□□□□ 0.47
CCDC40-209ENST00000573474 COL16A1Q07092 1604 aaPredicted RBP18■□□□□ 0.47
CCDC40-209ENST00000573474 NEUROD2Q15784 382 aa17.99■□□□□ 0.47
CCDC40-209ENST00000573474 CHRNA2Q15822 529 aa17.99■□□□□ 0.47
CCDC40-209ENST00000573474 NFE2L2Q16236 605 aa17.99■□□□□ 0.47
CCDC40-209ENST00000573474 COL22A1Q8NFW1 1626 aaPredicted RBP17.98■□□□□ 0.47
CCDC40-209ENST00000573474 NBPF6Q5VWK0 638 aa17.98■□□□□ 0.47
CCDC40-209ENST00000573474 WWC1Q8IX03 1113 aa17.98■□□□□ 0.47
CCDC40-209ENST00000573474 NBPF4Q96M43 638 aa17.98■□□□□ 0.47
CCDC40-209ENST00000573474 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
CCDC40-209ENST00000573474 COL18A1P39060 1754 aa17.98■□□□□ 0.47
CCDC40-209ENST00000573474 ABCA3Q99758 1704 aa17.98■□□□□ 0.47
CCDC40-209ENST00000573474 RIPK4P57078 832 aa17.97■□□□□ 0.47
CCDC40-209ENST00000573474 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
CCDC40-209ENST00000573474 ERBB3P21860 1342 aa17.97■□□□□ 0.47
CCDC40-209ENST00000573474 WDR63Q8IWG1 891 aa17.96■□□□□ 0.47
CCDC40-209ENST00000573474 FAM83GA6ND36 823 aa17.94■□□□□ 0.46
CCDC40-209ENST00000573474 USHBP1Q8N6Y0 703 aa17.94■□□□□ 0.46
CCDC40-209ENST00000573474 CDCA7LQ96GN5 454 aa17.94■□□□□ 0.46
CCDC40-209ENST00000573474 TRIM35Q9UPQ4 493 aa17.94■□□□□ 0.46
CCDC40-209ENST00000573474 NCAPD2Q15021 1401 aa17.93■□□□□ 0.46
CCDC40-209ENST00000573474 CSB-PGBD3P0DP91 1061 aa17.93■□□□□ 0.46
CCDC40-209ENST00000573474 RGPD5Q99666 1765 aa17.92■□□□□ 0.46
CCDC40-209ENST00000573474 E9PSI1 815 aa17.92■□□□□ 0.46
CCDC40-209ENST00000573474 SLFN5Q08AF3 891 aa17.92■□□□□ 0.46
CCDC40-209ENST00000573474 LMOD3Q0VAK6 560 aa17.92■□□□□ 0.46
CCDC40-209ENST00000573474 NLRP2Q9NX02 1062 aa17.92■□□□□ 0.46
CCDC40-209ENST00000573474 LMO7Q8WWI1 1683 aa17.91■□□□□ 0.46
CCDC40-209ENST00000573474 CAMTA1Q9Y6Y1 1673 aa17.91■□□□□ 0.46
CCDC40-209ENST00000573474 GAS2L2Q8NHY3 880 aa17.91■□□□□ 0.46
CCDC40-209ENST00000573474 JCADQ9P266 1359 aa17.91■□□□□ 0.46
CCDC40-209ENST00000573474 TRMT2AQ8IZ69 625 aaKnown RBP17.9■□□□□ 0.46
CCDC40-209ENST00000573474 EVA1CP58658 441 aa17.89■□□□□ 0.45
CCDC40-209ENST00000573474 MTHFSDQ2M296 383 aaKnown RBP17.89■□□□□ 0.45
CCDC40-209ENST00000573474 IL16Q14005 1332 aa17.89■□□□□ 0.45
CCDC40-209ENST00000573474 WDR17Q8IZU2 1322 aa17.89■□□□□ 0.45
CCDC40-209ENST00000573474 COL5A2P05997 1499 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-209ENST00000573474 FAM208AQ9UK61 1670 aaKnown RBP17.88■□□□□ 0.45
CCDC40-209ENST00000573474 CALD1Q05682 793 aaKnown RBP17.88■□□□□ 0.45
CCDC40-209ENST00000573474 DUSP27Q5VZP5 1158 aa17.88■□□□□ 0.45
CCDC40-209ENST00000573474 SPINK5Q9NQ38 1064 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-209ENST00000573474 RGPD2P0DJD1 1756 aa17.88■□□□□ 0.45
CCDC40-209ENST00000573474 AMOTQ4VCS5 1084 aa17.87■□□□□ 0.45
CCDC40-209ENST00000573474 PLEKHO1Q53GL0 409 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-209ENST00000573474 COL14A1Q05707 1796 aaKnown RBP17.86■□□□□ 0.45
CCDC40-209ENST00000573474 NUTM2BA6NNL0 878 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-209ENST00000573474 NUTM2EB1AL46 878 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-209ENST00000573474 HTATSF1O43719 755 aaKnown RBP17.86■□□□□ 0.45
CCDC40-209ENST00000573474 TOM1L2Q6ZVM7 507 aa17.86■□□□□ 0.45
CCDC40-209ENST00000573474 NUTM2AQ8IVF1 878 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-209ENST00000573474 RAPGEF4Q8WZA2 1011 aa17.86■□□□□ 0.45
CCDC40-209ENST00000573474 MYH16Q9H6N6 1097 aa17.86■□□□□ 0.45
CCDC40-209ENST00000573474 BTG4Q9NY30 223 aa17.86■□□□□ 0.45
CCDC40-209ENST00000573474 ADAMTS2O95450 1211 aa17.85■□□□□ 0.45
CCDC40-209ENST00000573474 CARD10Q9BWT7 1032 aa17.85■□□□□ 0.45
CCDC40-209ENST00000573474 STRN4Q9NRL3 753 aa17.85■□□□□ 0.45
CCDC40-209ENST00000573474 PLEKHG2Q9H7P9 1386 aa17.84■□□□□ 0.45
CCDC40-209ENST00000573474 SPATA31A6Q5VVP1 1343 aa17.84■□□□□ 0.45
CCDC40-209ENST00000573474 TATP17735 454 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms