RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IFT57Q9NWB7 429 aa28.82■■■□□ 2.2
VPS53-211ENST00000571805 AKAP12Q02952 1782 aa28.81■■■□□ 2.2
VPS53-211ENST00000571805 MRPL50Q8N5N7 158 aaKnown RBP28.81■■■□□ 2.2
VPS53-211ENST00000571805 GNAI1P63096 354 aa28.81■■■□□ 2.2
VPS53-211ENST00000571805 TBC1D2Q9BYX2 928 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 ANTXR1Q9H6X2 564 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 C3P01024 1663 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 DLG5Q8TDM6 1919 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 TSPYL6Q8N831 410 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 ARHGAP45Q92619 1136 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 COG3Q96JB2 828 aa28.8■■■□□ 2.2
VPS53-211ENST00000571805 NUCB1Q02818 461 aa28.79■■■□□ 2.2
VPS53-211ENST00000571805 PIK3R4Q99570 1358 aa28.78■■■□□ 2.2
VPS53-211ENST00000571805 PTCH1Q13635 1447 aa28.78■■■□□ 2.2
VPS53-211ENST00000571805 MBIPQ9NS73 344 aa28.77■■■□□ 2.2
VPS53-211ENST00000571805 ZBTB7BO15156 539 aaPredicted RBP28.77■■■□□ 2.2
VPS53-211ENST00000571805 RRS1Q15050 365 aaKnown RBP28.76■■■□□ 2.2
VPS53-211ENST00000571805 ITSN1Q15811 1721 aa28.76■■■□□ 2.2
VPS53-211ENST00000571805 HDGFP51858 240 aaKnown RBP28.76■■■□□ 2.19
VPS53-211ENST00000571805 SLKQ9H2G2 1235 aaPredicted RBP28.76■■■□□ 2.19
VPS53-211ENST00000571805 PRR36Q9H6K5 1346 aa28.75■■■□□ 2.19
VPS53-211ENST00000571805 C22orf23Q9BZE7 217 aa28.75■■■□□ 2.19
VPS53-211ENST00000571805 ZNF692Q9BU19 519 aaPredicted RBP28.74■■■□□ 2.19
VPS53-211ENST00000571805 ESF1Q9H501 851 aaKnown RBP28.74■■■□□ 2.19
VPS53-211ENST00000571805 KIF13AQ9H1H9 1805 aa28.74■■■□□ 2.19
VPS53-211ENST00000571805 CFAP44Q96MT7 982 aa28.73■■■□□ 2.19
VPS53-211ENST00000571805 MFAP1P55081 439 aaKnown RBP28.72■■■□□ 2.19
VPS53-211ENST00000571805 LMOD3Q0VAK6 560 aa28.72■■■□□ 2.19
VPS53-211ENST00000571805 TNRQ92752 1358 aa28.71■■■□□ 2.19
VPS53-211ENST00000571805 CHD1LQ86WJ1 897 aa28.71■■■□□ 2.19
VPS53-211ENST00000571805 ELL2O00472 640 aaPredicted RBP28.7■■■□□ 2.19
VPS53-211ENST00000571805 TMEM2Q9UHN6 1383 aa28.7■■■□□ 2.19
VPS53-211ENST00000571805 ABCC4O15439 1325 aa28.7■■■□□ 2.19
VPS53-211ENST00000571805 UBR1Q8IWV7 1749 aa28.7■■■□□ 2.18
VPS53-211ENST00000571805 TWISTNBQ3B726 338 aaPredicted RBP28.7■■■□□ 2.18
VPS53-211ENST00000571805 ROBO2Q9HCK4 1378 aa28.7■■■□□ 2.18
VPS53-211ENST00000571805 C8orf58Q8NAV2 365 aa28.69■■■□□ 2.18
VPS53-211ENST00000571805 IL27Q8NEV9 243 aa28.69■■■□□ 2.18
VPS53-211ENST00000571805 LNPKQ9C0E8 428 aa28.69■■■□□ 2.18
VPS53-211ENST00000571805 CHMP4BQ9H444 224 aaKnown RBP28.69■■■□□ 2.18
VPS53-211ENST00000571805 NRKQ7Z2Y5 1582 aa28.68■■■□□ 2.18
VPS53-211ENST00000571805 FAM83GA6ND36 823 aa28.68■■■□□ 2.18
VPS53-211ENST00000571805 ADAMTS13Q76LX8 1427 aa28.67■■■□□ 2.18
VPS53-211ENST00000571805 GCC1Q96CN9 775 aa28.66■■■□□ 2.18
VPS53-211ENST00000571805 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.65■■■□□ 2.18
VPS53-211ENST00000571805 C1orf115Q9H7X2 142 aa28.64■■■□□ 2.18
VPS53-211ENST00000571805 DCTN1Q14203 1278 aa28.64■■■□□ 2.17
VPS53-211ENST00000571805 SIRT2Q8IXJ6 389 aa28.64■■■□□ 2.17
VPS53-211ENST00000571805 TTC21BQ7Z4L5 1316 aa28.63■■■□□ 2.17
VPS53-211ENST00000571805 EIF4A2Q14240 407 aaKnown RBP28.62■■■□□ 2.17
VPS53-211ENST00000571805 TOPAZ1Q8N9V7 1692 aa28.62■■■□□ 2.17
VPS53-211ENST00000571805 BMP2KLQ5H9B9 411 aa28.61■■■□□ 2.17
VPS53-211ENST00000571805 ANKRD45Q5TZF3 282 aa28.61■■■□□ 2.17
VPS53-211ENST00000571805 AEBP1Q8IUX7 1158 aa28.61■■■□□ 2.17
VPS53-211ENST00000571805 API5Q9BZZ5 524 aaKnown RBP28.6■■■□□ 2.17
VPS53-211ENST00000571805 ACEP12821 1306 aa28.6■■■□□ 2.17
VPS53-211ENST00000571805 OVOS2A0A0J9YW53 1432 aa28.59■■■□□ 2.17
VPS53-211ENST00000571805 OVOS2Q6IE36 1432 aa28.59■■■□□ 2.17
VPS53-211ENST00000571805 PLEKHG3A1L390 1219 aa28.59■■■□□ 2.17
VPS53-211ENST00000571805 RBM25P49756 843 aaKnown RBP28.59■■■□□ 2.17
VPS53-211ENST00000571805 SULT6B1Q6IMI4 303 aa28.58■■■□□ 2.17
VPS53-211ENST00000571805 BRPF3Q9ULD4 1205 aa28.58■■■□□ 2.17
VPS53-211ENST00000571805 KIF24Q5T7B8 1368 aa28.57■■■□□ 2.16
VPS53-211ENST00000571805 LTKP29376 864 aa28.56■■■□□ 2.16
VPS53-211ENST00000571805 SPRYD3Q8NCJ5 442 aa28.56■■■□□ 2.16
VPS53-211ENST00000571805 PLEKHG1Q9ULL1 1385 aa28.56■■■□□ 2.16
VPS53-211ENST00000571805 NALCNQ8IZF0 1738 aa28.56■■■□□ 2.16
VPS53-211ENST00000571805 PEAK1Q9H792 1746 aa28.55■■■□□ 2.16
VPS53-211ENST00000571805 USP6P35125 1406 aa28.55■■■□□ 2.16
VPS53-211ENST00000571805 RGPD1P0DJD0 1748 aa28.53■■■□□ 2.16
VPS53-211ENST00000571805 CHL1O00533 1208 aa28.53■■■□□ 2.16
VPS53-211ENST00000571805 USP31Q70CQ4 1352 aa28.52■■■□□ 2.16
VPS53-211ENST00000571805 HSP90AB2PQ58FF8 381 aa28.51■■■□□ 2.15
VPS53-211ENST00000571805 NUTM2FA1L443 756 aa28.51■■■□□ 2.15
VPS53-211ENST00000571805 INTS3Q68E01 1043 aaKnown RBP28.51■■■□□ 2.15
VPS53-211ENST00000571805 CHMP5Q9NZZ3 219 aa28.51■■■□□ 2.15
VPS53-211ENST00000571805 SSH2Q76I76 1423 aa28.5■■■□□ 2.15
VPS53-211ENST00000571805 PTPRUQ92729 1446 aa28.5■■■□□ 2.15
VPS53-211ENST00000571805 HSCBQ8IWL3 235 aa28.5■■■□□ 2.15
VPS53-211ENST00000571805 KRT24Q2M2I5 525 aa28.49■■■□□ 2.15
VPS53-211ENST00000571805 SNX21Q969T3 373 aa28.49■■■□□ 2.15
VPS53-211ENST00000571805 RGS12O14924 1447 aa28.48■■■□□ 2.15
VPS53-211ENST00000571805 MCM10Q7L590 875 aa28.48■■■□□ 2.15
VPS53-211ENST00000571805 KIAA0232Q92628 1395 aa28.48■■■□□ 2.15
VPS53-211ENST00000571805 NCOA3Q9Y6Q9 1424 aa28.48■■■□□ 2.15
VPS53-211ENST00000571805 HAP1P54257 671 aaPredicted RBP28.46■■■□□ 2.15
VPS53-211ENST00000571805 DCTPP1Q9H773 170 aa28.46■■■□□ 2.15
VPS53-211ENST00000571805 MCM4P33991 863 aa28.45■■■□□ 2.15
VPS53-211ENST00000571805 TBC1D9Q6ZT07 1266 aa28.45■■■□□ 2.15
VPS53-211ENST00000571805 KIF2CQ99661 725 aa28.45■■■□□ 2.15
VPS53-211ENST00000571805 DDIT3P35638 169 aa28.44■■■□□ 2.14
VPS53-211ENST00000571805 SLC26A8Q96RN1 970 aa28.44■■■□□ 2.14
VPS53-211ENST00000571805 CRB1P82279 1406 aa28.44■■■□□ 2.14
VPS53-211ENST00000571805 RTN4Q9NQC3 1192 aaKnown RBP28.43■■■□□ 2.14
VPS53-211ENST00000571805 ATP10DQ9P241 1426 aa28.42■■■□□ 2.14
VPS53-211ENST00000571805 ARHGEF10O15013 1369 aa28.4■■■□□ 2.14
VPS53-211ENST00000571805 PLEKHM2Q8IWE5 1019 aa28.4■■■□□ 2.14
VPS53-211ENST00000571805 ANKRD44Q8N8A2 993 aa28.4■■■□□ 2.14
VPS53-211ENST00000571805 TTC21AQ8NDW8 1320 aa28.4■■■□□ 2.14
VPS53-211ENST00000571805 MAP3K19Q56UN5 1328 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms