RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 NBPF14Q5TI25 921 aa19.55■□□□□ 0.72
COMMD4-221ENST00000567935 CDK19Q9BWU1 502 aa19.55■□□□□ 0.72
COMMD4-221ENST00000567935 SBNO1A3KN83 1393 aa19.55■□□□□ 0.72
COMMD4-221ENST00000567935 ARHGEF10O15013 1369 aa19.55■□□□□ 0.72
COMMD4-221ENST00000567935 ATP7BP35670 1465 aa19.54■□□□□ 0.72
COMMD4-221ENST00000567935 FAM196AQ6ZSG2 479 aa19.54■□□□□ 0.72
COMMD4-221ENST00000567935 COL14A1Q05707 1796 aaKnown RBP19.53■□□□□ 0.72
COMMD4-221ENST00000567935 PHF8Q9UPP1 1060 aa19.53■□□□□ 0.72
COMMD4-221ENST00000567935 HDGFL2Q7Z4V5 671 aaPredicted RBP19.52■□□□□ 0.72
COMMD4-221ENST00000567935 WASLO00401 505 aaPredicted RBP19.51■□□□□ 0.71
COMMD4-221ENST00000567935 A0A1W2PP64 1363 aa19.51■□□□□ 0.71
COMMD4-221ENST00000567935 RGPD8O14715 1765 aaPredicted RBP19.51■□□□□ 0.71
COMMD4-221ENST00000567935 NRKQ7Z2Y5 1582 aa19.5■□□□□ 0.71
COMMD4-221ENST00000567935 MORC1Q86VD1 984 aa19.49■□□□□ 0.71
COMMD4-221ENST00000567935 POLR3AO14802 1390 aaPredicted RBP19.48■□□□□ 0.71
COMMD4-221ENST00000567935 ANKRD26Q9UPS8 1709 aa19.48■□□□□ 0.71
COMMD4-221ENST00000567935 CD163L1Q9NR16 1453 aa19.48■□□□□ 0.71
COMMD4-221ENST00000567935 WDR43Q15061 677 aaKnown RBP eCLIP19.47■□□□□ 0.71
COMMD4-221ENST00000567935 SPATA31A1Q5TZJ5 1347 aa19.47■□□□□ 0.71
COMMD4-221ENST00000567935 PDE3BQ13370 1112 aa19.44■□□□□ 0.7
COMMD4-221ENST00000567935 CCDC61Q9Y6R9 512 aa19.44■□□□□ 0.7
COMMD4-221ENST00000567935 CASZ1Q86V15 1759 aa19.44■□□□□ 0.7
COMMD4-221ENST00000567935 SMG6Q86US8 1419 aaKnown RBP19.43■□□□□ 0.7
COMMD4-221ENST00000567935 TRPM3Q9HCF6 1732 aaPredicted RBP19.43■□□□□ 0.7
COMMD4-221ENST00000567935 NEFLP07196 543 aa19.43■□□□□ 0.7
COMMD4-221ENST00000567935 CABP1Q9NZU7 370 aa19.43■□□□□ 0.7
COMMD4-221ENST00000567935 CEP350Q5VT06 3117 aa19.43■□□□□ 0.7
COMMD4-221ENST00000567935 CPSF1Q10570 1443 aaKnown RBP19.42■□□□□ 0.7
COMMD4-221ENST00000567935 PMFBP1Q8TBY8 1022 aa19.42■□□□□ 0.7
COMMD4-221ENST00000567935 PDGFDQ9GZP0 370 aaPredicted RBP19.42■□□□□ 0.7
COMMD4-221ENST00000567935 ANO8Q9HCE9 1232 aaPredicted RBP19.42■□□□□ 0.7
COMMD4-221ENST00000567935 EDC4Q6P2E9 1401 aaKnown RBP19.42■□□□□ 0.7
COMMD4-221ENST00000567935 PPIP5K1Q6PFW1 1433 aa19.42■□□□□ 0.7
COMMD4-221ENST00000567935 KIF20BQ96Q89 1820 aa19.41■□□□□ 0.7
COMMD4-221ENST00000567935 ALS2Q96Q42 1657 aa19.41■□□□□ 0.7
COMMD4-221ENST00000567935 NGEFQ8N5V2 710 aa19.41■□□□□ 0.7
COMMD4-221ENST00000567935 NUDT16Q96DE0 195 aaKnown RBP19.41■□□□□ 0.7
COMMD4-221ENST00000567935 CFAP53Q96M91 514 aa19.41■□□□□ 0.7
COMMD4-221ENST00000567935 CRYBG1Q9Y4K1 1723 aa19.4■□□□□ 0.7
COMMD4-221ENST00000567935 ZNF692Q9BU19 519 aaPredicted RBP19.4■□□□□ 0.7
COMMD4-221ENST00000567935 CHD4Q14839 1912 aa19.4■□□□□ 0.7
COMMD4-221ENST00000567935 PTGER2P43116 358 aa19.39■□□□□ 0.69
COMMD4-221ENST00000567935 PRDM11Q9NQV5 511 aa19.39■□□□□ 0.69
COMMD4-221ENST00000567935 TOPAZ1Q8N9V7 1692 aa19.39■□□□□ 0.69
COMMD4-221ENST00000567935 ITSN1Q15811 1721 aa19.39■□□□□ 0.69
COMMD4-221ENST00000567935 MON2Q7Z3U7 1717 aa19.39■□□□□ 0.69
COMMD4-221ENST00000567935 ZBTB7AO95365 584 aa19.38■□□□□ 0.69
COMMD4-221ENST00000567935 AKAP12Q02952 1782 aa19.38■□□□□ 0.69
COMMD4-221ENST00000567935 STRN4Q9NRL3 753 aa19.38■□□□□ 0.69
COMMD4-221ENST00000567935 NUDCQ9Y266 331 aa19.38■□□□□ 0.69
COMMD4-221ENST00000567935 USP35Q9P2H5 1018 aa19.37■□□□□ 0.69
COMMD4-221ENST00000567935 ADAMTS8Q9UP79 889 aa19.37■□□□□ 0.69
COMMD4-221ENST00000567935 FYB1O15117 783 aa19.36■□□□□ 0.69
COMMD4-221ENST00000567935 GIGYF1O75420 1035 aaPredicted RBP19.36■□□□□ 0.69
COMMD4-221ENST00000567935 SYT17Q9BSW7 474 aa19.36■□□□□ 0.69
COMMD4-221ENST00000567935 FHDC1Q9C0D6 1143 aaPredicted RBP19.36■□□□□ 0.69
COMMD4-221ENST00000567935 CHRNA2Q15822 529 aa19.35■□□□□ 0.69
COMMD4-221ENST00000567935 ANKARQ7Z5J8 1434 aa19.34■□□□□ 0.69
COMMD4-221ENST00000567935 PLEKHG3A1L390 1219 aa19.34■□□□□ 0.69
COMMD4-221ENST00000567935 ATF5Q9Y2D1 282 aaPredicted RBP19.34■□□□□ 0.69
COMMD4-221ENST00000567935 KIAA0232Q92628 1395 aa19.33■□□□□ 0.69
COMMD4-221ENST00000567935 BARGINQ6ZT62 677 aa19.33■□□□□ 0.68
COMMD4-221ENST00000567935 MTHFSP49914 203 aa19.32■□□□□ 0.68
COMMD4-221ENST00000567935 ERICH6BQ5W0A0 696 aa19.32■□□□□ 0.68
COMMD4-221ENST00000567935 PRR36Q9H6K5 1346 aa19.31■□□□□ 0.68
COMMD4-221ENST00000567935 GGNBP2Q9H3C7 697 aa19.31■□□□□ 0.68
COMMD4-221ENST00000567935 SUPT16HQ9Y5B9 1047 aaKnown RBP19.31■□□□□ 0.68
COMMD4-221ENST00000567935 RGPD3A6NKT7 1758 aaPredicted RBP19.3■□□□□ 0.68
COMMD4-221ENST00000567935 RGPD4Q7Z3J3 1758 aa19.3■□□□□ 0.68
COMMD4-221ENST00000567935 SSH2Q76I76 1423 aa19.29■□□□□ 0.68
COMMD4-221ENST00000567935 NCBP3Q53F19 620 aaKnown RBP19.29■□□□□ 0.68
COMMD4-221ENST00000567935 TNNT2P45379 298 aaPredicted RBP19.28■□□□□ 0.68
COMMD4-221ENST00000567935 AATKQ6ZMQ8 1374 aa19.28■□□□□ 0.68
COMMD4-221ENST00000567935 PLSCR1O15162 318 aa19.26■□□□□ 0.67
COMMD4-221ENST00000567935 FKBP8Q14318 412 aa19.26■□□□□ 0.67
COMMD4-221ENST00000567935 BCL11BQ9C0K0 894 aaPredicted RBP19.26■□□□□ 0.67
COMMD4-221ENST00000567935 USP6P35125 1406 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 PHRF1Q9P1Y6 1649 aaKnown RBP19.25■□□□□ 0.67
COMMD4-221ENST00000567935 PEAK1Q9H792 1746 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 ZC3H6P61129 1189 aaKnown RBP19.25■□□□□ 0.67
COMMD4-221ENST00000567935 LARP1Q6PKG0 1096 aaKnown RBP19.25■□□□□ 0.67
COMMD4-221ENST00000567935 PTF1AQ7RTS3 328 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 TCP11L2Q8N4U5 519 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 SGIP1Q9BQI5 828 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 TTC21AQ8NDW8 1320 aa19.25■□□□□ 0.67
COMMD4-221ENST00000567935 COL3A1P02461 1466 aaPredicted RBP19.24■□□□□ 0.67
COMMD4-221ENST00000567935 PAK3O75914 559 aaPredicted RBP19.24■□□□□ 0.67
COMMD4-221ENST00000567935 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.24■□□□□ 0.67
COMMD4-221ENST00000567935 PROM2Q8N271 834 aa19.24■□□□□ 0.67
COMMD4-221ENST00000567935 COG3Q96JB2 828 aa19.24■□□□□ 0.67
COMMD4-221ENST00000567935 ACEP12821 1306 aa19.24■□□□□ 0.67
COMMD4-221ENST00000567935 SHANK3Q9BYB0 1731 aa19.23■□□□□ 0.67
COMMD4-221ENST00000567935 EVA1CP58658 441 aa19.23■□□□□ 0.67
COMMD4-221ENST00000567935 RNF123Q5XPI4 1314 aa19.23■□□□□ 0.67
COMMD4-221ENST00000567935 ZNF521Q96K83 1311 aa19.23■□□□□ 0.67
COMMD4-221ENST00000567935 PARP4Q9UKK3 1724 aaKnown RBP19.22■□□□□ 0.67
COMMD4-221ENST00000567935 RUNDC1Q96C34 613 aa19.22■□□□□ 0.67
COMMD4-221ENST00000567935 PNNQ9H307 717 aaKnown RBP19.22■□□□□ 0.67
COMMD4-221ENST00000567935 OVOS2A0A0G2JMS6 1433 aa19.22■□□□□ 0.67
COMMD4-221ENST00000567935 OVOS2A0A0J9YW53 1432 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms