RNA–Protein interactions for RNA: ENST00000562610.5

COMMD4-206, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-206ENST00000562610 SEPT12Q8IYM1 358 aa22.43■■□□□ 1.18
COMMD4-206ENST00000562610 SPATA31A1Q5TZJ5 1347 aa22.41■■□□□ 1.18
COMMD4-206ENST00000562610 USP35Q9P2H5 1018 aa22.41■■□□□ 1.18
COMMD4-206ENST00000562610 LARP1Q6PKG0 1096 aaKnown RBP22.4■■□□□ 1.18
COMMD4-206ENST00000562610 ARHGEF25Q86VW2 580 aa22.4■■□□□ 1.18
COMMD4-206ENST00000562610 UPF1Q92900 1129 aaKnown RBP eCLIP22.4■■□□□ 1.187e-14■■■■■ 92.7
COMMD4-206ENST00000562610 ANKRD26Q9UPS8 1709 aa22.4■■□□□ 1.18
COMMD4-206ENST00000562610 NSD3Q9BZ95 1437 aa22.4■■□□□ 1.18
COMMD4-206ENST00000562610 CRB1P82279 1406 aa22.39■■□□□ 1.17
COMMD4-206ENST00000562610 PARP4Q9UKK3 1724 aaKnown RBP22.38■■□□□ 1.17
COMMD4-206ENST00000562610 COG3Q96JB2 828 aa22.38■■□□□ 1.17
COMMD4-206ENST00000562610 FAM208AQ9UK61 1670 aaKnown RBP22.36■■□□□ 1.17
COMMD4-206ENST00000562610 EP400Q96L91 3159 aa22.36■■□□□ 1.17
COMMD4-206ENST00000562610 ONECUT3O60422 494 aaPredicted RBP22.36■■□□□ 1.17
COMMD4-206ENST00000562610 AXIN2Q9Y2T1 843 aa22.35■■□□□ 1.17
COMMD4-206ENST00000562610 LRRC37A3O60309 1634 aa22.35■■□□□ 1.17
COMMD4-206ENST00000562610 KRT27Q7Z3Y8 459 aa22.34■■□□□ 1.17
COMMD4-206ENST00000562610 GGNBP2Q9H3C7 697 aa22.34■■□□□ 1.17
COMMD4-206ENST00000562610 TOM1L2Q6ZVM7 507 aa22.33■■□□□ 1.17
COMMD4-206ENST00000562610 WDR17Q8IZU2 1322 aa22.32■■□□□ 1.16
COMMD4-206ENST00000562610 RGPD1P0DJD0 1748 aa22.32■■□□□ 1.16
COMMD4-206ENST00000562610 CSB-PGBD3P0DP91 1061 aa22.32■■□□□ 1.16
COMMD4-206ENST00000562610 TCP11L2Q8N4U5 519 aa22.32■■□□□ 1.16
COMMD4-206ENST00000562610 RGPD2P0DJD1 1756 aa22.31■■□□□ 1.16
COMMD4-206ENST00000562610 FYB1O15117 783 aa22.31■■□□□ 1.16
COMMD4-206ENST00000562610 CARD14Q9BXL6 1004 aa22.31■■□□□ 1.16
COMMD4-206ENST00000562610 BARGINQ6ZT62 677 aa22.3■■□□□ 1.16
COMMD4-206ENST00000562610 MAP2P11137 1827 aaKnown RBP22.29■■□□□ 1.16
COMMD4-206ENST00000562610 THRAP3Q9Y2W1 955 aaKnown RBP22.29■■□□□ 1.16
COMMD4-206ENST00000562610 BLMP54132 1417 aaPredicted RBP22.29■■□□□ 1.16
COMMD4-206ENST00000562610 C11orf95C9JLR9 678 aaPredicted RBP22.28■■□□□ 1.16
COMMD4-206ENST00000562610 PEAK1Q9H792 1746 aa22.28■■□□□ 1.16
COMMD4-206ENST00000562610 TNS1Q9HBL0 1735 aaKnown RBP22.27■■□□□ 1.16
COMMD4-206ENST00000562610 CGNL1Q0VF96 1302 aa22.27■■□□□ 1.16
COMMD4-206ENST00000562610 ERBB3P21860 1342 aa22.26■■□□□ 1.15
COMMD4-206ENST00000562610 MAP3K19Q56UN5 1328 aa22.26■■□□□ 1.15
COMMD4-206ENST00000562610 FBLN1P23142 703 aa22.25■■□□□ 1.15
COMMD4-206ENST00000562610 FAM182BQ5T319 152 aa22.25■■□□□ 1.15
COMMD4-206ENST00000562610 KIF7Q2M1P5 1343 aa22.25■■□□□ 1.15
COMMD4-206ENST00000562610 AMPHP49418 695 aa22.24■■□□□ 1.15
COMMD4-206ENST00000562610 ANKRD24Q8TF21 1146 aa22.24■■□□□ 1.15
COMMD4-206ENST00000562610 RTL1A6NKG5 1358 aa22.24■■□□□ 1.15
COMMD4-206ENST00000562610 CCDC7Q96M83 1385 aa22.24■■□□□ 1.15
COMMD4-206ENST00000562610 RRS1Q15050 365 aaKnown RBP22.23■■□□□ 1.15
COMMD4-206ENST00000562610 CARD10Q9BWT7 1032 aa22.23■■□□□ 1.15
COMMD4-206ENST00000562610 PANK3Q9H999 370 aa22.23■■□□□ 1.15
COMMD4-206ENST00000562610 PDE3BQ13370 1112 aa22.22■■□□□ 1.15
COMMD4-206ENST00000562610 IP6K1Q92551 441 aa22.22■■□□□ 1.15
COMMD4-206ENST00000562610 SBF2Q86WG5 1849 aa22.22■■□□□ 1.15
COMMD4-206ENST00000562610 HOXC9P31274 260 aa22.21■■□□□ 1.15
COMMD4-206ENST00000562610 LTV1Q96GA3 475 aaPredicted RBP22.21■■□□□ 1.15
COMMD4-206ENST00000562610 NLRP2Q9NX02 1062 aa22.21■■□□□ 1.15
COMMD4-206ENST00000562610 SF3B2Q13435 895 aaKnown RBP22.2■■□□□ 1.14
COMMD4-206ENST00000562610 CCDC125Q86Z20 511 aa22.2■■□□□ 1.14
COMMD4-206ENST00000562610 DISP2A7MBM2 1401 aa22.2■■□□□ 1.14
COMMD4-206ENST00000562610 SMG6Q86US8 1419 aaKnown RBP22.18■■□□□ 1.14
COMMD4-206ENST00000562610 FLT4P35916 1363 aa22.17■■□□□ 1.14
COMMD4-206ENST00000562610 DDB1Q16531 1140 aa22.17■■□□□ 1.14
COMMD4-206ENST00000562610 CDCA7Q9BWT1 371 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-206ENST00000562610 OVOS2A0A0G2JMS6 1433 aa22.16■■□□□ 1.14
COMMD4-206ENST00000562610 TNS2Q63HR2 1409 aa22.16■■□□□ 1.14
COMMD4-206ENST00000562610 NSD2O96028 1365 aa22.16■■□□□ 1.14
COMMD4-206ENST00000562610 FAM196AQ6ZSG2 479 aa22.15■■□□□ 1.14
COMMD4-206ENST00000562610 KIF24Q5T7B8 1368 aa22.14■■□□□ 1.14
COMMD4-206ENST00000562610 TNNT2P45379 298 aaPredicted RBP22.13■■□□□ 1.13
COMMD4-206ENST00000562610 KNSTRNQ9Y448 316 aa22.13■■□□□ 1.13
COMMD4-206ENST00000562610 EMILIN1Q9Y6C2 1016 aa22.13■■□□□ 1.13
COMMD4-206ENST00000562610 INSRP06213 1382 aa22.12■■□□□ 1.13
COMMD4-206ENST00000562610 WASHC2AQ641Q2 1341 aa22.12■■□□□ 1.13
COMMD4-206ENST00000562610 SHANK3Q9BYB0 1731 aa22.12■■□□□ 1.13
COMMD4-206ENST00000562610 PPM1GO15355 546 aaPredicted RBP22.12■■□□□ 1.13
COMMD4-206ENST00000562610 IL2RBP14784 551 aa22.11■■□□□ 1.13
COMMD4-206ENST00000562610 DEFB132Q7Z7B7 95 aa22.11■■□□□ 1.13
COMMD4-206ENST00000562610 KAT6BQ8WYB5 2073 aa22.1■■□□□ 1.13
COMMD4-206ENST00000562610 HSP90AB2PQ58FF8 381 aa22.1■■□□□ 1.13
COMMD4-206ENST00000562610 EXOC5O00471 708 aa22.09■■□□□ 1.13
COMMD4-206ENST00000562610 TRIM37O94972 964 aa22.09■■□□□ 1.13
COMMD4-206ENST00000562610 BAG6P46379 1132 aa22.09■■□□□ 1.13
COMMD4-206ENST00000562610 NHSQ6T4R5 1651 aa22.07■■□□□ 1.12
COMMD4-206ENST00000562610 MORC1Q86VD1 984 aa22.07■■□□□ 1.12
COMMD4-206ENST00000562610 RREB1Q92766 1687 aa22.07■■□□□ 1.12
COMMD4-206ENST00000562610 MEGF6O75095 1541 aa22.06■■□□□ 1.12
COMMD4-206ENST00000562610 USHBP1Q8N6Y0 703 aa22.06■■□□□ 1.12
COMMD4-206ENST00000562610 MARCH10Q8NA82 808 aaPredicted RBP22.06■■□□□ 1.12
COMMD4-206ENST00000562610 RGPD3A6NKT7 1758 aaPredicted RBP22.06■■□□□ 1.12
COMMD4-206ENST00000562610 RGPD4Q7Z3J3 1758 aa22.06■■□□□ 1.12
COMMD4-206ENST00000562610 DOT1LQ8TEK3 1739 aa22.06■■□□□ 1.12
COMMD4-206ENST00000562610 POLKQ9UBT6 870 aa22.05■■□□□ 1.12
COMMD4-206ENST00000562610 NUP188Q5SRE5 1749 aa22.03■■□□□ 1.12
COMMD4-206ENST00000562610 AMER1Q5JTC6 1135 aaPredicted RBP22.03■■□□□ 1.12
COMMD4-206ENST00000562610 NBPF6Q5VWK0 638 aa22.03■■□□□ 1.12
COMMD4-206ENST00000562610 NBPF4Q96M43 638 aa22.03■■□□□ 1.12
COMMD4-206ENST00000562610 PKD1L3Q7Z443 1732 aa22.03■■□□□ 1.12
COMMD4-206ENST00000562610 BTAF1O14981 1849 aa22.02■■□□□ 1.12
COMMD4-206ENST00000562610 EN1Q05925 392 aaPredicted RBP22.02■■□□□ 1.12
COMMD4-206ENST00000562610 BCL9O00512 1426 aa22.01■■□□□ 1.11
COMMD4-206ENST00000562610 APBA3O96018 575 aa22.01■■□□□ 1.11
COMMD4-206ENST00000562610 CC2D1BQ5T0F9 858 aaKnown RBP21.99■■□□□ 1.11
COMMD4-206ENST00000562610 RAPGEF4Q8WZA2 1011 aa21.99■■□□□ 1.11
COMMD4-206ENST00000562610 PER1O15534 1290 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms