RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 TMPOP42166 694 aaKnown RBP12.52□□□□□ -0.41
RTF1-206ENST00000560447 CALD1Q05682 793 aaKnown RBP12.52□□□□□ -0.41
RTF1-206ENST00000560447 BACH2Q9BYV9 841 aa12.52□□□□□ -0.41
RTF1-206ENST00000560447 TBX22Q9Y458 520 aa12.52□□□□□ -0.41
RTF1-206ENST00000560447 EID1Q9Y6B2 187 aa12.52□□□□□ -0.41
RTF1-206ENST00000560447 PIK3R4Q99570 1358 aa12.52□□□□□ -0.41
RTF1-206ENST00000560447 USP54Q70EL1 1684 aa12.51□□□□□ -0.41
RTF1-206ENST00000560447 PLEKHG3A1L390 1219 aa12.51□□□□□ -0.41
RTF1-206ENST00000560447 GALR2O43603 387 aaPredicted RBP12.51□□□□□ -0.41
RTF1-206ENST00000560447 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
RTF1-206ENST00000560447 U2SURPO15042 1029 aaKnown RBP12.5□□□□□ -0.41
RTF1-206ENST00000560447 BCAR3O75815 825 aa12.5□□□□□ -0.41
RTF1-206ENST00000560447 PDE4AP27815 886 aa12.5□□□□□ -0.41
RTF1-206ENST00000560447 POLKQ9UBT6 870 aa12.5□□□□□ -0.41
RTF1-206ENST00000560447 ZNF142P52746 1687 aaPredicted RBP12.5□□□□□ -0.41
RTF1-206ENST00000560447 ROBO2Q9HCK4 1378 aa12.49□□□□□ -0.41
RTF1-206ENST00000560447 CANXP27824 592 aaKnown RBP12.49□□□□□ -0.41
RTF1-206ENST00000560447 TXNDC2Q86VQ3 553 aa12.49□□□□□ -0.41
RTF1-206ENST00000560447 PMFBP1Q8TBY8 1022 aa12.49□□□□□ -0.41
RTF1-206ENST00000560447 COG3Q96JB2 828 aa12.49□□□□□ -0.41
RTF1-206ENST00000560447 IPO9Q96P70 1041 aaKnown RBP12.49□□□□□ -0.41
RTF1-206ENST00000560447 PLEKHG5O94827 1062 aa12.48□□□□□ -0.41
RTF1-206ENST00000560447 NEUROD2Q15784 382 aa12.48□□□□□ -0.41
RTF1-206ENST00000560447 THEMISQ8N1K5 641 aaPredicted RBP12.48□□□□□ -0.41
RTF1-206ENST00000560447 CLUAP1Q96AJ1 413 aa12.48□□□□□ -0.41
RTF1-206ENST00000560447 TRIM35Q9UPQ4 493 aa12.48□□□□□ -0.41
RTF1-206ENST00000560447 RRP7AQ9Y3A4 280 aaKnown RBP12.48□□□□□ -0.41
RTF1-206ENST00000560447 OVOS2A0A0J9YW53 1432 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 OVOS2Q6IE36 1432 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 ANKARQ7Z5J8 1434 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 DLG5Q8TDM6 1919 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 TTC21AQ8NDW8 1320 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 BRPF1P55201 1214 aaPredicted RBP12.47□□□□□ -0.41
RTF1-206ENST00000560447 LMOD3Q0VAK6 560 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 ALDH1L2Q3SY69 923 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 RSPH6AQ9H0K4 717 aa12.47□□□□□ -0.41
RTF1-206ENST00000560447 CEP170BQ9Y4F5 1589 aaPredicted RBP12.47□□□□□ -0.41
RTF1-206ENST00000560447 USP6P35125 1406 aa12.46□□□□□ -0.41
RTF1-206ENST00000560447 FMN2Q9NZ56 1722 aa12.46□□□□□ -0.41
RTF1-206ENST00000560447 NFE2L2Q16236 605 aa12.46□□□□□ -0.41
RTF1-206ENST00000560447 ZKSCAN2Q63HK3 967 aa12.46□□□□□ -0.41
RTF1-206ENST00000560447 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.41
RTF1-206ENST00000560447 SSH2Q76I76 1423 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 PTPRUQ92729 1446 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 RGPD1P0DJD0 1748 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 USP31Q70CQ4 1352 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 KIF16BQ96L93 1317 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 PRR36Q9H6K5 1346 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 IL13P35225 146 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 RIPK4P57078 832 aa12.45□□□□□ -0.42
RTF1-206ENST00000560447 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.45□□□□□ -0.42
RTF1-206ENST00000560447 NOP58Q9Y2X3 529 aaKnown RBP12.45□□□□□ -0.42
RTF1-206ENST00000560447 LTKP29376 864 aa12.44□□□□□ -0.42
RTF1-206ENST00000560447 FAM161AQ3B820 660 aa12.44□□□□□ -0.42
RTF1-206ENST00000560447 DDRGK1Q96HY6 314 aa12.44□□□□□ -0.42
RTF1-206ENST00000560447 TTC21BQ7Z4L5 1316 aa12.43□□□□□ -0.42
RTF1-206ENST00000560447 IPO8O15397 1037 aaKnown RBP12.43□□□□□ -0.42
RTF1-206ENST00000560447 NME9Q86XW9 330 aa12.43□□□□□ -0.42
RTF1-206ENST00000560447 RASEFQ8IZ41 740 aa12.43□□□□□ -0.42
RTF1-206ENST00000560447 DCBLD2Q96PD2 775 aa12.43□□□□□ -0.42
RTF1-206ENST00000560447 TSPYL2Q9H2G4 693 aaPredicted RBP12.43□□□□□ -0.42
RTF1-206ENST00000560447 CHMP4BQ9H444 224 aaKnown RBP12.43□□□□□ -0.42
RTF1-206ENST00000560447 KIF24Q5T7B8 1368 aa12.43□□□□□ -0.42
RTF1-206ENST00000560447 CHD2O14647 1828 aaKnown RBP12.42□□□□□ -0.42
RTF1-206ENST00000560447 PRKAR2BP31323 418 aa12.42□□□□□ -0.42
RTF1-206ENST00000560447 GNAI1P63096 354 aa12.42□□□□□ -0.42
RTF1-206ENST00000560447 MVPQ14764 893 aaKnown RBP12.42□□□□□ -0.42
RTF1-206ENST00000560447 IFT57Q9NWB7 429 aa12.42□□□□□ -0.42
RTF1-206ENST00000560447 SETD1BQ9UPS6 1966 aaKnown RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 HAP1P54257 671 aaPredicted RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 EXOSC9Q06265 439 aaKnown RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 DZIP1LQ8IYY4 767 aaKnown RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 RWDD1Q9H446 243 aaPredicted RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 ZBTB47Q9UFB7 747 aaPredicted RBP12.41□□□□□ -0.42
RTF1-206ENST00000560447 DDX19BQ9UMR2 479 aa12.41□□□□□ -0.42
RTF1-206ENST00000560447 COG6Q9Y2V7 657 aa12.41□□□□□ -0.42
RTF1-206ENST00000560447 ACEP12821 1306 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 PANK1Q8TE04 598 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 ARHGAP45Q92619 1136 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
RTF1-206ENST00000560447 SMC4Q9NTJ3 1288 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 FBXO3Q9UK99 471 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 ADAMTSL3P82987 1691 aa12.4□□□□□ -0.42
RTF1-206ENST00000560447 RGPD8O14715 1765 aaPredicted RBP12.39□□□□□ -0.43
RTF1-206ENST00000560447 ZNF853P0CG23 659 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 NUBP1P53384 320 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 ATF7IPQ6VMQ6 1270 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 FTSJ3Q8IY81 847 aaKnown RBP12.39□□□□□ -0.43
RTF1-206ENST00000560447 MS4A3Q96HJ5 214 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 AMOTL2Q9Y2J4 779 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 EMILIN1Q9Y6C2 1016 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 PEAK1Q9H792 1746 aa12.39□□□□□ -0.43
RTF1-206ENST00000560447 ARHGEF10O15013 1369 aa12.38□□□□□ -0.43
RTF1-206ENST00000560447 PIK3C2AO00443 1686 aa12.38□□□□□ -0.43
RTF1-206ENST00000560447 HDAC1Q13547 482 aaPredicted RBP12.37□□□□□ -0.43
RTF1-206ENST00000560447 LHX8Q68G74 356 aa12.37□□□□□ -0.43
RTF1-206ENST00000560447 SSH1Q8WYL5 1049 aa12.37□□□□□ -0.43
RTF1-206ENST00000560447 TSR2Q969E8 191 aaKnown RBP12.37□□□□□ -0.43
RTF1-206ENST00000560447 SBNO1A3KN83 1393 aa12.37□□□□□ -0.43
RTF1-206ENST00000560447 FLT4P35916 1363 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms