RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ARHGAP9Q9BRR9 750 aa9.46□□□□□ -0.9
SCFD1-219ENST00000556413 BMP2P12643 396 aa9.45□□□□□ -0.9
SCFD1-219ENST00000556413 EMILIN1Q9Y6C2 1016 aa9.45□□□□□ -0.9
SCFD1-219ENST00000556413 ERBB4Q15303 1308 aa9.45□□□□□ -0.9
SCFD1-219ENST00000556413 UPP2O95045 317 aa9.44□□□□□ -0.9
SCFD1-219ENST00000556413 ZC3H4Q9UPT8 1303 aaKnown RBP9.43□□□□□ -0.9
SCFD1-219ENST00000556413 MAN1A2O60476 641 aa9.43□□□□□ -0.9
SCFD1-219ENST00000556413 EPS8L1Q8TE68 723 aa9.43□□□□□ -0.9
SCFD1-219ENST00000556413 OCSTAMPQ9BR26 566 aa9.43□□□□□ -0.9
SCFD1-219ENST00000556413 PPP1R26Q5T8A7 1209 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-219ENST00000556413 ZBTB33Q86T24 672 aa9.42□□□□□ -0.9
SCFD1-219ENST00000556413 SLC10A4Q96EP9 437 aa9.42□□□□□ -0.9
SCFD1-219ENST00000556413 KCTD15Q96SI1 283 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-219ENST00000556413 SOS2Q07890 1332 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-219ENST00000556413 TSEN34Q9BSV6 310 aaKnown RBP9.41□□□□□ -0.9
SCFD1-219ENST00000556413 HMX1Q9NP08 348 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-219ENST00000556413 SLC24A1O60721 1099 aa9.4□□□□□ -0.9
SCFD1-219ENST00000556413 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.9
SCFD1-219ENST00000556413 PTK2Q05397 1052 aa9.4□□□□□ -0.9
SCFD1-219ENST00000556413 CDV3Q9UKY7 258 aaKnown RBP9.4□□□□□ -0.9
SCFD1-219ENST00000556413 USP17L8P0C7I0 530 aa9.39□□□□□ -0.91
SCFD1-219ENST00000556413 CBLBQ13191 982 aa9.39□□□□□ -0.91
SCFD1-219ENST00000556413 PGPEP1Q9NXJ5 209 aa9.39□□□□□ -0.91
SCFD1-219ENST00000556413 DNMT3LQ9UJW3 386 aa9.39□□□□□ -0.91
SCFD1-219ENST00000556413 GPSM3Q9Y4H4 160 aa9.39□□□□□ -0.91
SCFD1-219ENST00000556413 RFC5P40937 340 aa9.38□□□□□ -0.91
SCFD1-219ENST00000556413 Q6ZVU0 165 aa9.38□□□□□ -0.91
SCFD1-219ENST00000556413 ADAM32Q8TC27 787 aa9.38□□□□□ -0.91
SCFD1-219ENST00000556413 VSIG8P0DPA2 414 aa9.37□□□□□ -0.91
SCFD1-219ENST00000556413 INTS6LQ5JSJ4 861 aaKnown RBP9.37□□□□□ -0.91
SCFD1-219ENST00000556413 ZSCAN1Q8NBB4 408 aa9.37□□□□□ -0.91
SCFD1-219ENST00000556413 PPFIA3O75145 1194 aa9.36□□□□□ -0.91
SCFD1-219ENST00000556413 DHX9Q08211 1270 aaKnown RBP9.36□□□□□ -0.91
SCFD1-219ENST00000556413 GOPCQ9HD26 462 aa9.36□□□□□ -0.91
SCFD1-219ENST00000556413 TTLL8A6PVC2 850 aa9.35□□□□□ -0.91
SCFD1-219ENST00000556413 SPINT1O43278 529 aa9.34□□□□□ -0.91
SCFD1-219ENST00000556413 PNMA1Q8ND90 353 aa9.34□□□□□ -0.91
SCFD1-219ENST00000556413 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.33□□□□□ -0.92
SCFD1-219ENST00000556413 PCMTD1Q96MG8 357 aaPredicted RBP9.33□□□□□ -0.92
SCFD1-219ENST00000556413 TRIM34Q9BYJ4 488 aa9.33□□□□□ -0.92
SCFD1-219ENST00000556413 FAM181BA6NEQ2 426 aa9.32□□□□□ -0.92
SCFD1-219ENST00000556413 FIGNL2A6NMB9 653 aa9.32□□□□□ -0.92
SCFD1-219ENST00000556413 NBPF20Q3BBV1 942 aa9.32□□□□□ -0.92
SCFD1-219ENST00000556413 AGBL1Q96MI9 1066 aa9.32□□□□□ -0.92
SCFD1-219ENST00000556413 NEUROD2Q15784 382 aa9.31□□□□□ -0.92
SCFD1-219ENST00000556413 TMEM259Q4ZIN3 620 aa9.31□□□□□ -0.92
SCFD1-219ENST00000556413 IL27Q8NEV9 243 aa9.31□□□□□ -0.92
SCFD1-219ENST00000556413 TMPRSS4Q9NRS4 437 aa9.31□□□□□ -0.92
SCFD1-219ENST00000556413 RAB15P59190 212 aa9.3□□□□□ -0.92
SCFD1-219ENST00000556413 PTSQ03393 145 aa9.3□□□□□ -0.92
SCFD1-219ENST00000556413 DZIP3Q86Y13 1208 aaKnown RBP9.3□□□□□ -0.92
SCFD1-219ENST00000556413 RELBQ01201 579 aa9.29□□□□□ -0.92
SCFD1-219ENST00000556413 ZNF784Q8NCA9 323 aaPredicted RBP9.29□□□□□ -0.92
SCFD1-219ENST00000556413 ESPNB1AK53 854 aa9.28□□□□□ -0.92
SCFD1-219ENST00000556413 ERVH48-1M5A8F1 160 aa9.28□□□□□ -0.92
SCFD1-219ENST00000556413 CTSOP43234 321 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-219ENST00000556413 INSM2Q96T92 566 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-219ENST00000556413 LILRA1O75019 489 aa9.27□□□□□ -0.93
SCFD1-219ENST00000556413 GJD4Q96KN9 370 aaPredicted RBP9.27□□□□□ -0.93
SCFD1-219ENST00000556413 ZNF395Q9H8N7 513 aaPredicted RBP9.27□□□□□ -0.93
SCFD1-219ENST00000556413 ADD1P35611 737 aaKnown RBP9.26□□□□□ -0.93
SCFD1-219ENST00000556413 GPR161Q8N6U8 529 aaKnown RBP9.26□□□□□ -0.93
SCFD1-219ENST00000556413 ADH1AP07327 375 aa9.25□□□□□ -0.93
SCFD1-219ENST00000556413 CCDC155Q8N6L0 562 aa9.25□□□□□ -0.93
SCFD1-219ENST00000556413 SLC35F4A4IF30 521 aa9.24□□□□□ -0.93
SCFD1-219ENST00000556413 ZBBXA8MT70 800 aa9.24□□□□□ -0.93
SCFD1-219ENST00000556413 BRPF1P55201 1214 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-219ENST00000556413 KDF1Q8NAX2 398 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-219ENST00000556413 POLMQ9NP87 494 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-219ENST00000556413 FBXO45P0C2W1 286 aa9.23□□□□□ -0.93
SCFD1-219ENST00000556413 KRT76Q01546 638 aa9.23□□□□□ -0.93
SCFD1-219ENST00000556413 SEPT12Q8IYM1 358 aa9.23□□□□□ -0.93
SCFD1-219ENST00000556413 RNF217Q8TC41 542 aa9.23□□□□□ -0.93
SCFD1-219ENST00000556413 NANOS1Q8WY41 292 aaKnown RBP9.23□□□□□ -0.93
SCFD1-219ENST00000556413 GIGYF1O75420 1035 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-219ENST00000556413 PTGIRP43119 386 aa9.21□□□□□ -0.94
SCFD1-219ENST00000556413 CYLDQ9NQC7 956 aa9.21□□□□□ -0.94
SCFD1-219ENST00000556413 PCDHB9Q9Y5E1 797 aa9.21□□□□□ -0.94
SCFD1-219ENST00000556413 FOXD4L5Q5VV16 416 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-219ENST00000556413 CNTNAP3BQ96NU0 1288 aa9.2□□□□□ -0.94
SCFD1-219ENST00000556413 CNTNAP3Q9BZ76 1288 aa9.2□□□□□ -0.94
SCFD1-219ENST00000556413 SENP3-EIF4A1A0A087X0R7 540 aa9.19□□□□□ -0.94
SCFD1-219ENST00000556413 ITGA6P23229 1130 aa9.19□□□□□ -0.94
SCFD1-219ENST00000556413 COL25A1Q9BXS0 654 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-219ENST00000556413 RNFT1Q5M7Z0 435 aa9.17□□□□□ -0.94
SCFD1-219ENST00000556413 VWA5B2Q8N398 1253 aa9.17□□□□□ -0.94
SCFD1-219ENST00000556413 BANK1Q8NDB2 785 aa9.17□□□□□ -0.94
SCFD1-219ENST00000556413 GPR37L1O60883 481 aa9.16□□□□□ -0.94
SCFD1-219ENST00000556413 MTMR14Q8NCE2 650 aa9.16□□□□□ -0.94
SCFD1-219ENST00000556413 TRIM52Q96A61 297 aa9.16□□□□□ -0.94
SCFD1-219ENST00000556413 CDC14CA4D256 554 aa9.15□□□□□ -0.94
SCFD1-219ENST00000556413 NR1H3Q13133 447 aa9.15□□□□□ -0.94
SCFD1-219ENST00000556413 LYSMD3Q7Z3D4 306 aa9.15□□□□□ -0.94
SCFD1-219ENST00000556413 ATP5J2-PTCD1G3V325 749 aa9.14□□□□□ -0.95
SCFD1-219ENST00000556413 SOCS7O14512 581 aa9.14□□□□□ -0.95
SCFD1-219ENST00000556413 RNF144AP50876 292 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-219ENST00000556413 SV2AQ7L0J3 742 aa9.14□□□□□ -0.95
SCFD1-219ENST00000556413 CCDC125Q86Z20 511 aa9.14□□□□□ -0.95
SCFD1-219ENST00000556413 ERVK-9P63128 1117 aa9.13□□□□□ -0.95
SCFD1-219ENST00000556413 PRICKLE2Q7Z3G6 844 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms