RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 CDCA8Q53HL2 280 aa16.62■□□□□ 0.25
VRK1-204ENST00000555351 FAM196AQ6ZSG2 479 aa16.61■□□□□ 0.25
VRK1-204ENST00000555351 WDR17Q8IZU2 1322 aa16.61■□□□□ 0.25
VRK1-204ENST00000555351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.25
VRK1-204ENST00000555351 ZRANB1Q9UGI0 708 aa16.6■□□□□ 0.25
VRK1-204ENST00000555351 ANKRD36BQ8N2N9 1353 aa16.6■□□□□ 0.25
VRK1-204ENST00000555351 OVOS2A0A0J9YW53 1432 aa16.6■□□□□ 0.25
VRK1-204ENST00000555351 DISP2A7MBM2 1401 aa16.6■□□□□ 0.25
VRK1-204ENST00000555351 OVOS2Q6IE36 1432 aa16.6■□□□□ 0.25
VRK1-204ENST00000555351 BAG6P46379 1132 aa16.59■□□□□ 0.25
VRK1-204ENST00000555351 CDCA7Q9BWT1 371 aaPredicted RBP16.59■□□□□ 0.25
VRK1-204ENST00000555351 USP35Q9P2H5 1018 aa16.59■□□□□ 0.25
VRK1-204ENST00000555351 AXIN2Q9Y2T1 843 aa16.59■□□□□ 0.25
VRK1-204ENST00000555351 PDE3BQ13370 1112 aa16.58■□□□□ 0.24
VRK1-204ENST00000555351 NME9Q86XW9 330 aa16.58■□□□□ 0.24
VRK1-204ENST00000555351 ZBTB7CA1YPR0 619 aa16.57■□□□□ 0.24
VRK1-204ENST00000555351 TOM1L2Q6ZVM7 507 aa16.57■□□□□ 0.24
VRK1-204ENST00000555351 CARD10Q9BWT7 1032 aa16.57■□□□□ 0.24
VRK1-204ENST00000555351 WNK3Q9BYP7 1800 aa16.56■□□□□ 0.24
VRK1-204ENST00000555351 RGPD5Q99666 1765 aa16.56■□□□□ 0.24
VRK1-204ENST00000555351 TNS1Q9HBL0 1735 aaKnown RBP16.56■□□□□ 0.24
VRK1-204ENST00000555351 LTN1O94822 1766 aa16.56■□□□□ 0.24
VRK1-204ENST00000555351 CCDC7Q96M83 1385 aa16.55■□□□□ 0.24
VRK1-204ENST00000555351 DEFB132Q7Z7B7 95 aa16.55■□□□□ 0.24
VRK1-204ENST00000555351 PARD3Q8TEW0 1356 aa16.54■□□□□ 0.24
VRK1-204ENST00000555351 CCER1Q8TC90 406 aaPredicted RBP16.54■□□□□ 0.24
VRK1-204ENST00000555351 LRRC37A3O60309 1634 aa16.54■□□□□ 0.24
VRK1-204ENST00000555351 SOX12O15370 315 aa16.53■□□□□ 0.24
VRK1-204ENST00000555351 FAM182BQ5T319 152 aa16.53■□□□□ 0.24
VRK1-204ENST00000555351 PEAK1Q9H792 1746 aa16.53■□□□□ 0.24
VRK1-204ENST00000555351 BCL9O00512 1426 aa16.53■□□□□ 0.24
VRK1-204ENST00000555351 ERBB3P21860 1342 aa16.52■□□□□ 0.24
VRK1-204ENST00000555351 CSB-PGBD3P0DP91 1061 aa16.52■□□□□ 0.24
VRK1-204ENST00000555351 COG3Q96JB2 828 aa16.52■□□□□ 0.24
VRK1-204ENST00000555351 OVOS2A0A0G2JMS6 1433 aa16.52■□□□□ 0.23
VRK1-204ENST00000555351 FAM208AQ9UK61 1670 aaKnown RBP16.51■□□□□ 0.23
VRK1-204ENST00000555351 DDB1Q16531 1140 aa16.51■□□□□ 0.23
VRK1-204ENST00000555351 MYOM1P52179 1685 aa16.5■□□□□ 0.23
VRK1-204ENST00000555351 IP6K1Q92551 441 aa16.5■□□□□ 0.23
VRK1-204ENST00000555351 TRIM37O94972 964 aa16.49■□□□□ 0.23
VRK1-204ENST00000555351 FYB1O15117 783 aa16.48■□□□□ 0.23
VRK1-204ENST00000555351 RTL1A6NKG5 1358 aa16.48■□□□□ 0.23
VRK1-204ENST00000555351 RGPD3A6NKT7 1758 aaPredicted RBP16.47■□□□□ 0.23
VRK1-204ENST00000555351 RGPD4Q7Z3J3 1758 aa16.47■□□□□ 0.23
VRK1-204ENST00000555351 EIF4G2P78344 907 aaKnown RBP eCLIP16.47■□□□□ 0.231e-6■□□□□ 9.4
VRK1-204ENST00000555351 EN1Q05925 392 aaPredicted RBP16.47■□□□□ 0.23
VRK1-204ENST00000555351 CAMKK2Q96RR4 588 aa16.47■□□□□ 0.23
VRK1-204ENST00000555351 KIF20BQ96Q89 1820 aa16.47■□□□□ 0.23
VRK1-204ENST00000555351 TNS2Q63HR2 1409 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 EXOC5O00471 708 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 APBA3O96018 575 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 ANKRD24Q8TF21 1146 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 SBF2Q86WG5 1849 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 KIF24Q5T7B8 1368 aa16.46■□□□□ 0.23
VRK1-204ENST00000555351 NLRP2Q9NX02 1062 aa16.45■□□□□ 0.22
VRK1-204ENST00000555351 RREB1Q92766 1687 aa16.45■□□□□ 0.22
VRK1-204ENST00000555351 MAP3K19Q56UN5 1328 aa16.45■□□□□ 0.22
VRK1-204ENST00000555351 PLSCR1O15162 318 aa16.43■□□□□ 0.22
VRK1-204ENST00000555351 IL2RBP14784 551 aa16.43■□□□□ 0.22
VRK1-204ENST00000555351 HOXC9P31274 260 aa16.43■□□□□ 0.22
VRK1-204ENST00000555351 MARCH10Q8NA82 808 aaPredicted RBP16.43■□□□□ 0.22
VRK1-204ENST00000555351 BCL11BQ9C0K0 894 aaPredicted RBP16.43■□□□□ 0.22
VRK1-204ENST00000555351 AMPHP49418 695 aa16.42■□□□□ 0.22
VRK1-204ENST00000555351 EZH2Q15910 746 aaKnown RBP16.42■□□□□ 0.22
VRK1-204ENST00000555351 CARD14Q9BXL6 1004 aa16.42■□□□□ 0.22
VRK1-204ENST00000555351 GGNBP2Q9H3C7 697 aa16.42■□□□□ 0.22
VRK1-204ENST00000555351 NSD3Q9BZ95 1437 aa16.41■□□□□ 0.22
VRK1-204ENST00000555351 LRP5O75197 1615 aa16.41■□□□□ 0.22
VRK1-204ENST00000555351 HSPA5P11021 654 aaKnown RBP16.4■□□□□ 0.22
VRK1-204ENST00000555351 CGNL1Q0VF96 1302 aa16.4■□□□□ 0.22
VRK1-204ENST00000555351 NUP188Q5SRE5 1749 aa16.39■□□□□ 0.21
VRK1-204ENST00000555351 INSRP06213 1382 aa16.38■□□□□ 0.21
VRK1-204ENST00000555351 FLT4P35916 1363 aa16.38■□□□□ 0.21
VRK1-204ENST00000555351 SMG6Q86US8 1419 aaKnown RBP16.38■□□□□ 0.21
VRK1-204ENST00000555351 NHSQ6T4R5 1651 aa16.37■□□□□ 0.21
VRK1-204ENST00000555351 ANKRD26Q9UPS8 1709 aa16.37■□□□□ 0.21
VRK1-204ENST00000555351 RRS1Q15050 365 aaKnown RBP16.36■□□□□ 0.21
VRK1-204ENST00000555351 NBPF14Q5TI25 921 aa16.36■□□□□ 0.21
VRK1-204ENST00000555351 FBLN1P23142 703 aa16.35■□□□□ 0.21
VRK1-204ENST00000555351 R3HDM1Q15032 1099 aaKnown RBP16.34■□□□□ 0.21
VRK1-204ENST00000555351 LTV1Q96GA3 475 aaPredicted RBP16.34■□□□□ 0.21
VRK1-204ENST00000555351 NSD2O96028 1365 aa16.34■□□□□ 0.21
VRK1-204ENST00000555351 PSDA5PKW4 1024 aaPredicted RBP16.33■□□□□ 0.2
VRK1-204ENST00000555351 RGPD2P0DJD1 1756 aa16.33■□□□□ 0.2
VRK1-204ENST00000555351 HSP90AB2PQ58FF8 381 aa16.31■□□□□ 0.2
VRK1-204ENST00000555351 NBPF6Q5VWK0 638 aa16.31■□□□□ 0.2
VRK1-204ENST00000555351 NBPF4Q96M43 638 aa16.31■□□□□ 0.2
VRK1-204ENST00000555351 NCAPD2Q15021 1401 aa16.3■□□□□ 0.2
VRK1-204ENST00000555351 WASHC2AQ641Q2 1341 aa16.3■□□□□ 0.2
VRK1-204ENST00000555351 PTF1AQ7RTS3 328 aa16.3■□□□□ 0.2
VRK1-204ENST00000555351 ZCRB1Q8TBF4 217 aaKnown RBP16.3■□□□□ 0.2
VRK1-204ENST00000555351 SHANK3Q9BYB0 1731 aa16.3■□□□□ 0.2
VRK1-204ENST00000555351 MEGF6O75095 1541 aa16.29■□□□□ 0.2
VRK1-204ENST00000555351 MAP2P11137 1827 aaKnown RBP16.29■□□□□ 0.2
VRK1-204ENST00000555351 RAPGEF4Q8WZA2 1011 aa16.29■□□□□ 0.2
VRK1-204ENST00000555351 POLR3GLQ9BT43 218 aa16.29■□□□□ 0.2
VRK1-204ENST00000555351 PANK3Q9H999 370 aa16.29■□□□□ 0.2
VRK1-204ENST00000555351 PLEKHG2Q9H7P9 1386 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 KCNQ2O43526 872 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 TXNRD1Q16881 649 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms