RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 FAM182BQ5T319 152 aa17.3■□□□□ 0.36
SHMT2-214ENST00000554604 BARGINQ6ZT62 677 aa17.3■□□□□ 0.36
SHMT2-214ENST00000554604 ARHGEF25Q86VW2 580 aa17.3■□□□□ 0.36
SHMT2-214ENST00000554604 ZRANB1Q9UGI0 708 aa17.3■□□□□ 0.36
SHMT2-214ENST00000554604 CRB1P82279 1406 aa17.3■□□□□ 0.36
SHMT2-214ENST00000554604 TOM1L2Q6ZVM7 507 aa17.29■□□□□ 0.36
SHMT2-214ENST00000554604 THRAP3Q9Y2W1 955 aaKnown RBP17.29■□□□□ 0.36
SHMT2-214ENST00000554604 NFAT5O94916 1531 aa17.29■□□□□ 0.36
SHMT2-214ENST00000554604 LTN1O94822 1766 aa17.29■□□□□ 0.36
SHMT2-214ENST00000554604 USP31Q70CQ4 1352 aa17.28■□□□□ 0.36
SHMT2-214ENST00000554604 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
SHMT2-214ENST00000554604 CDCA8Q53HL2 280 aa17.28■□□□□ 0.36
SHMT2-214ENST00000554604 RGPD1P0DJD0 1748 aa17.27■□□□□ 0.36
SHMT2-214ENST00000554604 AXIN2Q9Y2T1 843 aa17.27■□□□□ 0.36
SHMT2-214ENST00000554604 CSB-PGBD3P0DP91 1061 aa17.26■□□□□ 0.35
SHMT2-214ENST00000554604 DEFB132Q7Z7B7 95 aa17.26■□□□□ 0.35
SHMT2-214ENST00000554604 WDR17Q8IZU2 1322 aa17.25■□□□□ 0.35
SHMT2-214ENST00000554604 PARP4Q9UKK3 1724 aaKnown RBP17.25■□□□□ 0.35
SHMT2-214ENST00000554604 FAM196AQ6ZSG2 479 aa17.25■□□□□ 0.35
SHMT2-214ENST00000554604 ANKRD36BQ8N2N9 1353 aa17.25■□□□□ 0.35
SHMT2-214ENST00000554604 BAG6P46379 1132 aa17.24■□□□□ 0.35
SHMT2-214ENST00000554604 ABCC6O95255 1503 aa17.24■□□□□ 0.35
SHMT2-214ENST00000554604 WNK3Q9BYP7 1800 aa17.23■□□□□ 0.35
SHMT2-214ENST00000554604 COG3Q96JB2 828 aa17.22■□□□□ 0.35
SHMT2-214ENST00000554604 OVOS2A0A0J9YW53 1432 aa17.21■□□□□ 0.35
SHMT2-214ENST00000554604 OVOS2Q6IE36 1432 aa17.21■□□□□ 0.35
SHMT2-214ENST00000554604 TNS1Q9HBL0 1735 aaKnown RBP17.21■□□□□ 0.35
SHMT2-214ENST00000554604 TRIM37O94972 964 aa17.2■□□□□ 0.34
SHMT2-214ENST00000554604 DDB1Q16531 1140 aa17.2■□□□□ 0.34
SHMT2-214ENST00000554604 CARD10Q9BWT7 1032 aa17.2■□□□□ 0.34
SHMT2-214ENST00000554604 KIF20BQ96Q89 1820 aa17.19■□□□□ 0.34
SHMT2-214ENST00000554604 LRRC37A3O60309 1634 aa17.19■□□□□ 0.34
SHMT2-214ENST00000554604 CDCA7Q9BWT1 371 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-214ENST00000554604 MYOM1P52179 1685 aa17.19■□□□□ 0.34
SHMT2-214ENST00000554604 KAT6BQ8WYB5 2073 aa17.19■□□□□ 0.34
SHMT2-214ENST00000554604 EIF4G2P78344 907 aaKnown RBP eCLIP17.18■□□□□ 0.34
SHMT2-214ENST00000554604 NLRP2Q9NX02 1062 aa17.18■□□□□ 0.34
SHMT2-214ENST00000554604 CCDC7Q96M83 1385 aa17.17■□□□□ 0.34
SHMT2-214ENST00000554604 C11orf95C9JLR9 678 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-214ENST00000554604 EN1Q05925 392 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-214ENST00000554604 POLR3GLQ9BT43 218 aa17.17■□□□□ 0.34
SHMT2-214ENST00000554604 ERBB3P21860 1342 aa17.17■□□□□ 0.34
SHMT2-214ENST00000554604 ANKRD24Q8TF21 1146 aa17.16■□□□□ 0.34
SHMT2-214ENST00000554604 OVOS2A0A0G2JMS6 1433 aa17.15■□□□□ 0.34
SHMT2-214ENST00000554604 SBF2Q86WG5 1849 aa17.15■□□□□ 0.34
SHMT2-214ENST00000554604 FYB1O15117 783 aa17.15■□□□□ 0.34
SHMT2-214ENST00000554604 APBA3O96018 575 aa17.15■□□□□ 0.34
SHMT2-214ENST00000554604 GGNBP2Q9H3C7 697 aa17.15■□□□□ 0.34
SHMT2-214ENST00000554604 AMPHP49418 695 aa17.14■□□□□ 0.33
SHMT2-214ENST00000554604 IP6K1Q92551 441 aa17.14■□□□□ 0.33
SHMT2-214ENST00000554604 FAM208AQ9UK61 1670 aaKnown RBP17.13■□□□□ 0.33
SHMT2-214ENST00000554604 SRCAPQ6ZRS2 3230 aa17.13■□□□□ 0.33
SHMT2-214ENST00000554604 DISP2A7MBM2 1401 aa17.13■□□□□ 0.33
SHMT2-214ENST00000554604 EXOC5O00471 708 aa17.13■□□□□ 0.33
SHMT2-214ENST00000554604 HSPA5P11021 654 aaKnown RBP17.13■□□□□ 0.33
SHMT2-214ENST00000554604 LTV1Q96GA3 475 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-214ENST00000554604 PEAK1Q9H792 1746 aa17.13■□□□□ 0.33
SHMT2-214ENST00000554604 FBLN1P23142 703 aa17.12■□□□□ 0.33
SHMT2-214ENST00000554604 MAP3K19Q56UN5 1328 aa17.12■□□□□ 0.33
SHMT2-214ENST00000554604 EZH2Q15910 746 aaKnown RBP17.11■□□□□ 0.33
SHMT2-214ENST00000554604 NSD3Q9BZ95 1437 aa17.11■□□□□ 0.33
SHMT2-214ENST00000554604 IL2RBP14784 551 aa17.1■□□□□ 0.33
SHMT2-214ENST00000554604 HOXC9P31274 260 aa17.1■□□□□ 0.33
SHMT2-214ENST00000554604 MARCH10Q8NA82 808 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-214ENST00000554604 CARD14Q9BXL6 1004 aa17.1■□□□□ 0.33
SHMT2-214ENST00000554604 RGPD2P0DJD1 1756 aa17.1■□□□□ 0.33
SHMT2-214ENST00000554604 RRS1Q15050 365 aaKnown RBP17.09■□□□□ 0.33
SHMT2-214ENST00000554604 CAMKK2Q96RR4 588 aa17.09■□□□□ 0.33
SHMT2-214ENST00000554604 PARD3Q8TEW0 1356 aa17.09■□□□□ 0.33
SHMT2-214ENST00000554604 TNS2Q63HR2 1409 aa17.09■□□□□ 0.33
SHMT2-214ENST00000554604 RTL1A6NKG5 1358 aa17.08■□□□□ 0.32
SHMT2-214ENST00000554604 CGNL1Q0VF96 1302 aa17.07■□□□□ 0.32
SHMT2-214ENST00000554604 PSDA5PKW4 1024 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-214ENST00000554604 MAP2P11137 1827 aaKnown RBP17.06■□□□□ 0.32
SHMT2-214ENST00000554604 BCL11BQ9C0K0 894 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-214ENST00000554604 RREB1Q92766 1687 aa17.06■□□□□ 0.32
SHMT2-214ENST00000554604 SMG6Q86US8 1419 aaKnown RBP17.05■□□□□ 0.32
SHMT2-214ENST00000554604 BCL9O00512 1426 aa17.04■□□□□ 0.32
SHMT2-214ENST00000554604 NUP188Q5SRE5 1749 aa17.04■□□□□ 0.32
SHMT2-214ENST00000554604 RGPD3A6NKT7 1758 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-214ENST00000554604 RGPD4Q7Z3J3 1758 aa17.03■□□□□ 0.32
SHMT2-214ENST00000554604 R3HDM1Q15032 1099 aaKnown RBP17.03■□□□□ 0.32
SHMT2-214ENST00000554604 ANKRD26Q9UPS8 1709 aa17.03■□□□□ 0.32
SHMT2-214ENST00000554604 FLT4P35916 1363 aa17.02■□□□□ 0.32
SHMT2-214ENST00000554604 NBPF14Q5TI25 921 aa17.02■□□□□ 0.32
SHMT2-214ENST00000554604 MIER1Q8N108 512 aa17.02■□□□□ 0.32
SHMT2-214ENST00000554604 KIF24Q5T7B8 1368 aa17.02■□□□□ 0.31
SHMT2-214ENST00000554604 PLSCR1O15162 318 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 PPM1GO15355 546 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-214ENST00000554604 HSP90AB2PQ58FF8 381 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 PTF1AQ7RTS3 328 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 PANK3Q9H999 370 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 INSRP06213 1382 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 NHSQ6T4R5 1651 aa17.01■□□□□ 0.31
SHMT2-214ENST00000554604 DDX54Q8TDD1 881 aaKnown RBP17■□□□□ 0.31
SHMT2-214ENST00000554604 EMILIN1Q9Y6C2 1016 aa17■□□□□ 0.31
SHMT2-214ENST00000554604 NBPF6Q5VWK0 638 aa16.99■□□□□ 0.31
SHMT2-214ENST00000554604 ACSBG1Q96GR2 724 aa16.99■□□□□ 0.31
SHMT2-214ENST00000554604 NBPF4Q96M43 638 aa16.99■□□□□ 0.31
SHMT2-214ENST00000554604 KCNQ2O43526 872 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms