RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 UNC5CLQ8IV45 518 aa29.11■■■□□ 2.25
NEK3-202ENST00000550841 MAP3K19Q56UN5 1328 aa29.11■■■□□ 2.25
NEK3-202ENST00000550841 SLIT2O94813 1529 aa29.1■■■□□ 2.25
NEK3-202ENST00000550841 RRS1Q15050 365 aaKnown RBP29.1■■■□□ 2.25
NEK3-202ENST00000550841 IP6K1Q92551 441 aa29.1■■■□□ 2.25
NEK3-202ENST00000550841 KIF24Q5T7B8 1368 aa29.09■■■□□ 2.25
NEK3-202ENST00000550841 ABCC6O95255 1503 aa29.07■■■□□ 2.24
NEK3-202ENST00000550841 POLKQ9UBT6 870 aa29.07■■■□□ 2.24
NEK3-202ENST00000550841 NWD2Q9ULI1 1742 aa29.06■■■□□ 2.24
NEK3-202ENST00000550841 RTL1A6NKG5 1358 aa29.05■■■□□ 2.24
NEK3-202ENST00000550841 AXIN2Q9Y2T1 843 aa29.05■■■□□ 2.24
NEK3-202ENST00000550841 LTN1O94822 1766 aa29.05■■■□□ 2.24
NEK3-202ENST00000550841 BCL9LQ86UU0 1499 aa29.04■■■□□ 2.24
NEK3-202ENST00000550841 MAP2P11137 1827 aaKnown RBP29.04■■■□□ 2.24
NEK3-202ENST00000550841 PPM1GO15355 546 aaPredicted RBP29.04■■■□□ 2.24
NEK3-202ENST00000550841 HOXC9P31274 260 aa29.04■■■□□ 2.24
NEK3-202ENST00000550841 ATRNO75882 1429 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 PLCH1Q4KWH8 1693 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 RALBP1Q15311 655 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 STRN4Q9NRL3 753 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 EMILIN1Q9Y6C2 1016 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 COL18A1P39060 1754 aa29.03■■■□□ 2.24
NEK3-202ENST00000550841 BLMP54132 1417 aaPredicted RBP29.03■■■□□ 2.24
NEK3-202ENST00000550841 CAMTA1Q9Y6Y1 1673 aa29.02■■■□□ 2.24
NEK3-202ENST00000550841 LMO7Q8WWI1 1683 aa29.02■■■□□ 2.24
NEK3-202ENST00000550841 FLT4P35916 1363 aa29.01■■■□□ 2.24
NEK3-202ENST00000550841 VPS72Q15906 364 aa29.01■■■□□ 2.23
NEK3-202ENST00000550841 CSB-PGBD3P0DP91 1061 aa28.99■■■□□ 2.23
NEK3-202ENST00000550841 GJD4Q96KN9 370 aaPredicted RBP28.99■■■□□ 2.23
NEK3-202ENST00000550841 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.98■■■□□ 2.23
NEK3-202ENST00000550841 CCDC9Q9Y3X0 531 aaKnown RBP28.98■■■□□ 2.23
NEK3-202ENST00000550841 COL5A2P05997 1499 aaPredicted RBP28.97■■■□□ 2.23
NEK3-202ENST00000550841 MTHFSP49914 203 aa28.97■■■□□ 2.23
NEK3-202ENST00000550841 ANKRD24Q8TF21 1146 aa28.97■■■□□ 2.23
NEK3-202ENST00000550841 INSRP06213 1382 aa28.97■■■□□ 2.23
NEK3-202ENST00000550841 PARD3Q8TEW0 1356 aa28.97■■■□□ 2.23
NEK3-202ENST00000550841 HSP90AB2PQ58FF8 381 aa28.96■■■□□ 2.23
NEK3-202ENST00000550841 WDR17Q8IZU2 1322 aa28.95■■■□□ 2.23
NEK3-202ENST00000550841 LARP1Q6PKG0 1096 aaKnown RBP28.95■■■□□ 2.22
NEK3-202ENST00000550841 TOM1L2Q6ZVM7 507 aa28.95■■■□□ 2.22
NEK3-202ENST00000550841 ERBB3P21860 1342 aa28.94■■■□□ 2.22
NEK3-202ENST00000550841 RGPD5Q99666 1765 aa28.94■■■□□ 2.22
NEK3-202ENST00000550841 PPP2R1AP30153 589 aa28.94■■■□□ 2.22
NEK3-202ENST00000550841 LTV1Q96GA3 475 aaPredicted RBP28.94■■■□□ 2.22
NEK3-202ENST00000550841 NRAPQ86VF7 1730 aa28.94■■■□□ 2.22
NEK3-202ENST00000550841 SMG6Q86US8 1419 aaKnown RBP28.94■■■□□ 2.22
NEK3-202ENST00000550841 SPATA31A5Q5VU36 1347 aa28.92■■■□□ 2.22
NEK3-202ENST00000550841 SPATA31A7Q8IWB4 1347 aa28.92■■■□□ 2.22
NEK3-202ENST00000550841 PRKRIP1Q9H875 184 aaPredicted RBP28.91■■■□□ 2.22
NEK3-202ENST00000550841 ANP32CO43423 234 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 CRB1P82279 1406 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 CCDC125Q86Z20 511 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 CFAP53Q96M91 514 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 CARD10Q9BWT7 1032 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 PEAK1Q9H792 1746 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 NLRP2Q9NX02 1062 aa28.9■■■□□ 2.22
NEK3-202ENST00000550841 THRAP3Q9Y2W1 955 aaKnown RBP28.89■■■□□ 2.22
NEK3-202ENST00000550841 SPATA31A1Q5TZJ5 1347 aa28.89■■■□□ 2.21
NEK3-202ENST00000550841 TCP11L2Q8N4U5 519 aa28.87■■■□□ 2.21
NEK3-202ENST00000550841 MYBBP1AQ9BQG0 1328 aaKnown RBP28.87■■■□□ 2.21
NEK3-202ENST00000550841 USP35Q9P2H5 1018 aa28.86■■■□□ 2.21
NEK3-202ENST00000550841 EIF4A2Q14240 407 aaKnown RBP28.84■■■□□ 2.21
NEK3-202ENST00000550841 BARGINQ6ZT62 677 aa28.83■■■□□ 2.21
NEK3-202ENST00000550841 DIAPH1O60610 1272 aaKnown RBP28.82■■■□□ 2.2
NEK3-202ENST00000550841 FAM208AQ9UK61 1670 aaKnown RBP28.82■■■□□ 2.2
NEK3-202ENST00000550841 ONECUT3O60422 494 aaPredicted RBP28.81■■■□□ 2.2
NEK3-202ENST00000550841 CDCA7Q9BWT1 371 aaPredicted RBP28.81■■■□□ 2.2
NEK3-202ENST00000550841 NBPF6Q5VWK0 638 aa28.8■■■□□ 2.2
NEK3-202ENST00000550841 NBPF4Q96M43 638 aa28.8■■■□□ 2.2
NEK3-202ENST00000550841 IL13P35225 146 aa28.79■■■□□ 2.2
NEK3-202ENST00000550841 FAM98CQ17RN3 349 aaKnown RBP28.79■■■□□ 2.2
NEK3-202ENST00000550841 EYA1Q99502 592 aa28.78■■■□□ 2.2
NEK3-202ENST00000550841 NUDCQ9Y266 331 aa28.78■■■□□ 2.2
NEK3-202ENST00000550841 GLI3P10071 1580 aa28.77■■■□□ 2.2
NEK3-202ENST00000550841 SEPT12Q8IYM1 358 aa28.76■■■□□ 2.19
NEK3-202ENST00000550841 A0A0G2JS52 829 aa28.74■■■□□ 2.19
NEK3-202ENST00000550841 IL2RBP14784 551 aa28.74■■■□□ 2.19
NEK3-202ENST00000550841 MYT1Q01538 1121 aa28.74■■■□□ 2.19
NEK3-202ENST00000550841 DIEXFQ68CQ4 756 aaKnown RBP28.74■■■□□ 2.19
NEK3-202ENST00000550841 RAPGEF4Q8WZA2 1011 aa28.72■■■□□ 2.19
NEK3-202ENST00000550841 IGSF1Q8N6C5 1336 aa28.71■■■□□ 2.19
NEK3-202ENST00000550841 SF3B2Q13435 895 aaKnown RBP28.71■■■□□ 2.19
NEK3-202ENST00000550841 USHBP1Q8N6Y0 703 aa28.71■■■□□ 2.19
NEK3-202ENST00000550841 RGPD2P0DJD1 1756 aa28.7■■■□□ 2.19
NEK3-202ENST00000550841 U2SURPO15042 1029 aaKnown RBP28.69■■■□□ 2.18
NEK3-202ENST00000550841 TATP17735 454 aaPredicted RBP28.69■■■□□ 2.18
NEK3-202ENST00000550841 COL3A1P02461 1466 aaPredicted RBP28.69■■■□□ 2.18
NEK3-202ENST00000550841 EXOC5O00471 708 aa28.68■■■□□ 2.18
NEK3-202ENST00000550841 KRT27Q7Z3Y8 459 aa28.68■■■□□ 2.18
NEK3-202ENST00000550841 SULT6B1Q6IMI4 303 aa28.67■■■□□ 2.18
NEK3-202ENST00000550841 NCAPD2Q15021 1401 aa28.67■■■□□ 2.18
NEK3-202ENST00000550841 DDB1Q16531 1140 aa28.66■■■□□ 2.18
NEK3-202ENST00000550841 DISP2A7MBM2 1401 aa28.65■■■□□ 2.18
NEK3-202ENST00000550841 PDE3BQ13370 1112 aa28.64■■■□□ 2.18
NEK3-202ENST00000550841 U2AF1L5P0DN76 240 aaPredicted RBP28.63■■■□□ 2.17
NEK3-202ENST00000550841 U2AF1Q01081 240 aaKnown RBP eCLIP28.63■■■□□ 2.17
NEK3-202ENST00000550841 THSD7AQ9UPZ6 1657 aa28.62■■■□□ 2.17
NEK3-202ENST00000550841 DEFB132Q7Z7B7 95 aa28.61■■■□□ 2.17
NEK3-202ENST00000550841 KDRP35968 1356 aa28.61■■■□□ 2.17
NEK3-202ENST00000550841 PLEKHG2Q9H7P9 1386 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms