RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KIAA2012Q0VF49 1180 aa19.08■□□□□ 0.64
CUX1-211ENST00000546411 PROSER2Q86WR7 435 aaPredicted RBP19.08■□□□□ 0.64
CUX1-211ENST00000546411 C8orf58Q8NAV2 365 aa19.08■□□□□ 0.64
CUX1-211ENST00000546411 FOSBP53539 338 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 EVA1CP58658 441 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 TSHZ3Q63HK5 1081 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 RUFY2Q8WXA3 655 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 LRRCC1Q9C099 1032 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 ZNF518AQ6AHZ1 1483 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 A0A1W2PP64 1363 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 ACEP12821 1306 aa19.07■□□□□ 0.64
CUX1-211ENST00000546411 K7ELQ4 463 aaPredicted RBP19.07■□□□□ 0.64
CUX1-211ENST00000546411 SRGAP3O43295 1099 aa19.06■□□□□ 0.64
CUX1-211ENST00000546411 CCT4P50991 539 aaKnown RBP19.06■□□□□ 0.64
CUX1-211ENST00000546411 NEUROD6Q96NK8 337 aa19.06■□□□□ 0.64
CUX1-211ENST00000546411 PIK3C2GO75747 1445 aa19.06■□□□□ 0.64
CUX1-211ENST00000546411 TOMM22Q9NS69 142 aa19.06■□□□□ 0.64
CUX1-211ENST00000546411 RABEP1Q15276 862 aa19.06■□□□□ 0.64
CUX1-211ENST00000546411 CCDC27Q2M243 656 aa19.05■□□□□ 0.64
CUX1-211ENST00000546411 SRCIN1Q9C0H9 1055 aa19.05■□□□□ 0.64
CUX1-211ENST00000546411 ATF3P18847 181 aa19.05■□□□□ 0.64
CUX1-211ENST00000546411 FOXO3O43524 673 aa19.05■□□□□ 0.64
CUX1-211ENST00000546411 MYL6BP14649 208 aa19.05■□□□□ 0.64
CUX1-211ENST00000546411 NUTM1Q86Y26 1132 aa19.04■□□□□ 0.64
CUX1-211ENST00000546411 RPAP2Q8IXW5 612 aaPredicted RBP19.04■□□□□ 0.64
CUX1-211ENST00000546411 PLEKHO1Q53GL0 409 aaPredicted RBP19.04■□□□□ 0.64
CUX1-211ENST00000546411 UPF3BQ9BZI7 483 aaKnown RBP19.04■□□□□ 0.64
CUX1-211ENST00000546411 SMC3Q9UQE7 1217 aa19.04■□□□□ 0.64
CUX1-211ENST00000546411 MAGI2Q86UL8 1455 aa19.04■□□□□ 0.64
CUX1-211ENST00000546411 ERC2O15083 957 aa19.04■□□□□ 0.64
CUX1-211ENST00000546411 NSD2O96028 1365 aa19.03■□□□□ 0.64
CUX1-211ENST00000546411 H3BQV1 296 aa19.03■□□□□ 0.64
CUX1-211ENST00000546411 IFFO2Q5TF58 517 aa19.03■□□□□ 0.64
CUX1-211ENST00000546411 TBC1D32Q96NH3 1257 aa19.03■□□□□ 0.64
CUX1-211ENST00000546411 GNAT3A8MTJ3 354 aa19.02■□□□□ 0.64
CUX1-211ENST00000546411 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.02■□□□□ 0.643e-7■■■□□ 18.3
CUX1-211ENST00000546411 ANXA1P04083 346 aa19.02■□□□□ 0.64
CUX1-211ENST00000546411 FAM184AQ8NB25 1140 aa19.02■□□□□ 0.64
CUX1-211ENST00000546411 HSP90AB4PQ58FF6 505 aa19.02■□□□□ 0.64
CUX1-211ENST00000546411 MRE11P49959 708 aa19.01■□□□□ 0.63
CUX1-211ENST00000546411 MPNDQ8N594 471 aa19.01■□□□□ 0.63
CUX1-211ENST00000546411 TBC1D9Q6ZT07 1266 aa19.01■□□□□ 0.63
CUX1-211ENST00000546411 MEIS3Q99687 375 aa19■□□□□ 0.63
CUX1-211ENST00000546411 FSD1Q9BTV5 496 aa19■□□□□ 0.63
CUX1-211ENST00000546411 TULP1O00294 542 aaPredicted RBP19■□□□□ 0.63
CUX1-211ENST00000546411 NASPP49321 788 aaPredicted RBP19■□□□□ 0.63
CUX1-211ENST00000546411 CHAF1AQ13111 956 aaPredicted RBP19■□□□□ 0.63
CUX1-211ENST00000546411 CNTROBQ8N137 903 aa19■□□□□ 0.63
CUX1-211ENST00000546411 DDX54Q8TDD1 881 aaKnown RBP19■□□□□ 0.63
CUX1-211ENST00000546411 EIF2AK4Q9P2K8 1649 aaKnown RBP19■□□□□ 0.63
CUX1-211ENST00000546411 PLA2R1Q13018 1463 aa19■□□□□ 0.63
CUX1-211ENST00000546411 MPRIPQ6WCQ1 1025 aa18.99■□□□□ 0.63
CUX1-211ENST00000546411 C16orf71Q8IYS4 520 aaPredicted RBP18.99■□□□□ 0.63
CUX1-211ENST00000546411 BTBD11A6QL63 1104 aa18.99■□□□□ 0.63
CUX1-211ENST00000546411 PHF14O94880 888 aa18.98■□□□□ 0.63
CUX1-211ENST00000546411 RBM42Q9BTD8 480 aaKnown RBP18.98■□□□□ 0.63
CUX1-211ENST00000546411 CWC27Q6UX04 472 aaKnown RBP18.98■□□□□ 0.63
CUX1-211ENST00000546411 ANKLE2Q86XL3 938 aa18.98■□□□□ 0.63
CUX1-211ENST00000546411 MAST1Q9Y2H9 1570 aa18.98■□□□□ 0.63
CUX1-211ENST00000546411 ATP6V1DQ9Y5K8 247 aa18.98■□□□□ 0.63
CUX1-211ENST00000546411 ABCA8O94911 1581 aa18.98■□□□□ 0.63
CUX1-211ENST00000546411 SF3A1Q15459 793 aaKnown RBP18.98■□□□□ 0.63
CUX1-211ENST00000546411 DNAJC2Q99543 621 aaKnown RBP18.98■□□□□ 0.63
CUX1-211ENST00000546411 KDM5CP41229 1560 aa18.97■□□□□ 0.63
CUX1-211ENST00000546411 VAMP4O75379 141 aa18.97■□□□□ 0.63
CUX1-211ENST00000546411 LRRFIP2Q9Y608 721 aaKnown RBP18.97■□□□□ 0.63
CUX1-211ENST00000546411 KDM2BQ8NHM5 1336 aa18.97■□□□□ 0.63
CUX1-211ENST00000546411 SAMD9LQ8IVG5 1584 aa18.97■□□□□ 0.63
CUX1-211ENST00000546411 EIF4A2Q14240 407 aaKnown RBP18.97■□□□□ 0.63
CUX1-211ENST00000546411 LARP6Q9BRS8 491 aaKnown RBP18.96■□□□□ 0.63
CUX1-211ENST00000546411 FIBPO43427 364 aa18.96■□□□□ 0.63
CUX1-211ENST00000546411 TAF7Q15545 349 aaPredicted RBP18.96■□□□□ 0.63
CUX1-211ENST00000546411 CSPP1Q1MSJ5 1256 aa18.96■□□□□ 0.63
CUX1-211ENST00000546411 TRIM35Q9UPQ4 493 aa18.96■□□□□ 0.63
CUX1-211ENST00000546411 ATP7AQ04656 1500 aa18.96■□□□□ 0.63
CUX1-211ENST00000546411 UGGT1Q9NYU2 1555 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 HTATSF1O43719 755 aaKnown RBP18.95■□□□□ 0.62
CUX1-211ENST00000546411 FLIIQ13045 1269 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 HDAC1Q13547 482 aaPredicted RBP18.95■□□□□ 0.62
CUX1-211ENST00000546411 IL16Q14005 1332 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 GTF2E1P29083 439 aaPredicted RBP18.95■□□□□ 0.62
CUX1-211ENST00000546411 STRN4Q9NRL3 753 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 TTC21BQ7Z4L5 1316 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 PTPRTO14522 1441 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 APPP05067 770 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 FBXW7Q969H0 707 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 NUCB1Q02818 461 aa18.95■□□□□ 0.62
CUX1-211ENST00000546411 ANO8Q9HCE9 1232 aaPredicted RBP18.95■□□□□ 0.62
CUX1-211ENST00000546411 PPIP5K1Q6PFW1 1433 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 SSFA2P28290 1259 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 RNF20Q5VTR2 975 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 GOLGA6L6A8MZA4 724 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 BMP2KLQ5H9B9 411 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 ZBTB40Q9NUA8 1239 aa18.94■□□□□ 0.62
CUX1-211ENST00000546411 BLMP54132 1417 aaPredicted RBP18.94■□□□□ 0.62
CUX1-211ENST00000546411 FAM177BA6PVY3 158 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 MRPL50Q8N5N7 158 aaKnown RBP18.93■□□□□ 0.62
CUX1-211ENST00000546411 ISY1Q9ULR0 285 aaKnown RBP18.93■□□□□ 0.62
CUX1-211ENST00000546411 MX1P20591 662 aa18.93■□□□□ 0.62
CUX1-211ENST00000546411 ADGBQ8N7X0 1667 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms