RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TMEM132EQ6IEE7 984 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 NPC1L1Q9UHC9 1359 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 LRP6O75581 1613 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 EDC4Q6P2E9 1401 aaKnown RBP6.83□□□□□ -1.32
USP28-213ENST00000544967 HSPA5P11021 654 aaKnown RBP6.83□□□□□ -1.32
USP28-213ENST00000544967 NFKBIBQ15653 356 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 TMED8Q6PL24 325 aaPredicted RBP6.83□□□□□ -1.32
USP28-213ENST00000544967 PROSER2Q86WR7 435 aaPredicted RBP6.83□□□□□ -1.32
USP28-213ENST00000544967 MRS2Q9HD23 443 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 PPIP5K1Q6PFW1 1433 aa6.83□□□□□ -1.32
USP28-213ENST00000544967 PNPLA6Q8IY17 1366 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 PLEKHG2Q9H7P9 1386 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 USP19O94966 1318 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 BRINP3Q76B58 766 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 ZNF692Q9BU19 519 aaPredicted RBP6.82□□□□□ -1.32
USP28-213ENST00000544967 PEAK1Q9H792 1746 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 PARP4Q9UKK3 1724 aaKnown RBP6.82□□□□□ -1.32
USP28-213ENST00000544967 NCAPD2Q15021 1401 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 ANKRD36BQ8N2N9 1353 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 SHANK3Q9BYB0 1731 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 ZNF592Q92610 1267 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 SLAIN2Q9P270 581 aa6.82□□□□□ -1.32
USP28-213ENST00000544967 TOM1O60784 492 aa6.81□□□□□ -1.32
USP28-213ENST00000544967 RGPD3A6NKT7 1758 aaPredicted RBP6.81□□□□□ -1.32
USP28-213ENST00000544967 RGPD4Q7Z3J3 1758 aa6.81□□□□□ -1.32
USP28-213ENST00000544967 EVC2Q86UK5 1308 aa6.81□□□□□ -1.32
USP28-213ENST00000544967 CDK12Q9NYV4 1490 aaPredicted RBP6.81□□□□□ -1.32
USP28-213ENST00000544967 WAPLQ7Z5K2 1190 aa6.81□□□□□ -1.32
USP28-213ENST00000544967 FRAT1Q92837 279 aaPredicted RBP6.81□□□□□ -1.32
USP28-213ENST00000544967 CPDO75976 1380 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 RRP1P56182 461 aaKnown RBP6.8□□□□□ -1.32
USP28-213ENST00000544967 NAP1L5Q96NT1 182 aaPredicted RBP6.8□□□□□ -1.32
USP28-213ENST00000544967 ISY1Q9ULR0 285 aaKnown RBP6.8□□□□□ -1.32
USP28-213ENST00000544967 PKD1L3Q7Z443 1732 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 ARHGEF10O15013 1369 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 SLIT2O94813 1529 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 CLCN1P35523 988 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.8□□□□□ -1.32
USP28-213ENST00000544967 ADAMTS7Q9UKP4 1686 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 JCADQ9P266 1359 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 RGPD5Q99666 1765 aa6.8□□□□□ -1.32
USP28-213ENST00000544967 NSD2O96028 1365 aa6.79□□□□□ -1.32
USP28-213ENST00000544967 SPATA31A6Q5VVP1 1343 aa6.79□□□□□ -1.32
USP28-213ENST00000544967 CARD11Q9BXL7 1154 aa6.79□□□□□ -1.32
USP28-213ENST00000544967 CICQ96RK0 1608 aaPredicted RBP6.79□□□□□ -1.32
USP28-213ENST00000544967 KIF24Q5T7B8 1368 aa6.79□□□□□ -1.32
USP28-213ENST00000544967 SPATA31A3Q5VYP0 1347 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 TTC21AQ8NDW8 1320 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 BRPF1P55201 1214 aaPredicted RBP6.78□□□□□ -1.32
USP28-213ENST00000544967 TICAM2Q86XR7 235 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 ZMYND15Q9H091 742 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 TRAK1Q9UPV9 953 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 NPHP3Q7Z494 1330 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 A0A1W2PP64 1363 aa6.78□□□□□ -1.32
USP28-213ENST00000544967 CCDC184Q52MB2 194 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 CDK19Q9BWU1 502 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 CCDC61Q9Y6R9 512 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 ATF3P18847 181 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 LAS1LQ9Y4W2 734 aaKnown RBP6.77□□□□□ -1.33
USP28-213ENST00000544967 MAP2P11137 1827 aaKnown RBP6.77□□□□□ -1.33
USP28-213ENST00000544967 GLI3P10071 1580 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 NUDT16Q96DE0 195 aaKnown RBP6.77□□□□□ -1.33
USP28-213ENST00000544967 LRRC37A3O60309 1634 aa6.77□□□□□ -1.33
USP28-213ENST00000544967 KIF7Q2M1P5 1343 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 TPM2P07951 284 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 TERF1P54274 439 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 PNISRQ8TF01 805 aaKnown RBP6.76□□□□□ -1.33
USP28-213ENST00000544967 CWC22Q9HCG8 908 aaKnown RBP6.76□□□□□ -1.33
USP28-213ENST00000544967 COL3A1P02461 1466 aaPredicted RBP6.76□□□□□ -1.33
USP28-213ENST00000544967 AATKQ6ZMQ8 1374 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 ZNF831Q5JPB2 1677 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 ST20-MTHFSA0A0A6YYL1 179 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 HSP90AA2PQ14568 343 aaPredicted RBP6.76□□□□□ -1.33
USP28-213ENST00000544967 FAM9BQ8IZU0 186 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 RTL1A6NKG5 1358 aa6.76□□□□□ -1.33
USP28-213ENST00000544967 HSP90AA1P07900 732 aaKnown RBP6.75□□□□□ -1.33
USP28-213ENST00000544967 CALD1Q05682 793 aaKnown RBP6.75□□□□□ -1.33
USP28-213ENST00000544967 CDCA8Q53HL2 280 aa6.75□□□□□ -1.33
USP28-213ENST00000544967 ATRNO75882 1429 aa6.75□□□□□ -1.33
USP28-213ENST00000544967 PHF8Q9UPP1 1060 aa6.75□□□□□ -1.33
USP28-213ENST00000544967 KDM2BQ8NHM5 1336 aa6.75□□□□□ -1.33
USP28-213ENST00000544967 RGS22Q8NE09 1264 aa6.75□□□□□ -1.33
USP28-213ENST00000544967 BLMP54132 1417 aaPredicted RBP6.75□□□□□ -1.33
USP28-213ENST00000544967 RAD21O60216 631 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 RBM10P98175 930 aaKnown RBP6.74□□□□□ -1.33
USP28-213ENST00000544967 RALBP1Q15311 655 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 FAM161AQ3B820 660 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 CERS3Q8IU89 383 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 HIRIP3Q9BW71 556 aaPredicted RBP6.74□□□□□ -1.33
USP28-213ENST00000544967 POGKQ9P215 609 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 MTMR7Q9Y216 660 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 RGPD2P0DJD1 1756 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 UBAP1LF5GYI3 381 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 TMF1P82094 1093 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 FOXD4L5Q5VV16 416 aaPredicted RBP6.74□□□□□ -1.33
USP28-213ENST00000544967 CENPQQ7L2Z9 268 aaPredicted RBP6.74□□□□□ -1.33
USP28-213ENST00000544967 FOXD4L4Q8WXT5 416 aaPredicted RBP6.74□□□□□ -1.33
USP28-213ENST00000544967 STK26Q9P289 416 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 FSD2A1L4K1 749 aa6.74□□□□□ -1.33
USP28-213ENST00000544967 MINK1Q8N4C8 1332 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms