RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NOP58Q9Y2X3 529 aaKnown RBP20.94■□□□□ 0.94
COL4A1-204ENST00000543140 RIMS1Q86UR5 1692 aaKnown RBP20.93■□□□□ 0.94
COL4A1-204ENST00000543140 DIP2AQ14689 1571 aa20.93■□□□□ 0.94
COL4A1-204ENST00000543140 OVOS2A0A0J9YW53 1432 aa20.93■□□□□ 0.94
COL4A1-204ENST00000543140 OVOS2Q6IE36 1432 aa20.93■□□□□ 0.94
COL4A1-204ENST00000543140 TRIM27P14373 513 aa20.93■□□□□ 0.94
COL4A1-204ENST00000543140 EIF4A2Q14240 407 aaKnown RBP20.93■□□□□ 0.94
COL4A1-204ENST00000543140 MVPQ14764 893 aaKnown RBP20.93■□□□□ 0.94
COL4A1-204ENST00000543140 AEBP1Q8IUX7 1158 aa20.93■□□□□ 0.94
COL4A1-204ENST00000543140 NOB1Q9ULX3 412 aaKnown RBP20.93■□□□□ 0.94
COL4A1-204ENST00000543140 CEP170BQ9Y4F5 1589 aaPredicted RBP20.92■□□□□ 0.94
COL4A1-204ENST00000543140 DLG5Q8TDM6 1919 aa20.92■□□□□ 0.94
COL4A1-204ENST00000543140 HSP90AB2PQ58FF8 381 aa20.92■□□□□ 0.94
COL4A1-204ENST00000543140 FAM83GA6ND36 823 aa20.91■□□□□ 0.94
COL4A1-204ENST00000543140 SULT6B1Q6IMI4 303 aa20.91■□□□□ 0.94
COL4A1-204ENST00000543140 DCTN1Q14203 1278 aa20.89■□□□□ 0.93
COL4A1-204ENST00000543140 ATF7IPQ6VMQ6 1270 aa20.89■□□□□ 0.93
COL4A1-204ENST00000543140 XRN1Q8IZH2 1706 aaKnown RBP20.89■□□□□ 0.93
COL4A1-204ENST00000543140 SSH2Q76I76 1423 aa20.89■□□□□ 0.93
COL4A1-204ENST00000543140 ELL2O00472 640 aaPredicted RBP20.88■□□□□ 0.93
COL4A1-204ENST00000543140 ITPRIPQ8IWB1 547 aa20.88■□□□□ 0.93
COL4A1-204ENST00000543140 RBM33Q96EV2 1170 aaKnown RBP20.88■□□□□ 0.93
COL4A1-204ENST00000543140 AAMPQ13685 434 aa20.87■□□□□ 0.93
COL4A1-204ENST00000543140 ZBTB47Q9UFB7 747 aaPredicted RBP20.87■□□□□ 0.93
COL4A1-204ENST00000543140 PEAK1Q9H792 1746 aa20.87■□□□□ 0.93
COL4A1-204ENST00000543140 CALD1Q05682 793 aaKnown RBP20.87■□□□□ 0.93
COL4A1-204ENST00000543140 FAM161AQ3B820 660 aa20.87■□□□□ 0.93
COL4A1-204ENST00000543140 TSPYL6Q8N831 410 aa20.87■□□□□ 0.93
COL4A1-204ENST00000543140 C8orf34Q49A92 452 aa20.86■□□□□ 0.93
COL4A1-204ENST00000543140 MBIPQ9NS73 344 aa20.86■□□□□ 0.93
COL4A1-204ENST00000543140 NALCNQ8IZF0 1738 aa20.86■□□□□ 0.93
COL4A1-204ENST00000543140 GNAI1P63096 354 aa20.86■□□□□ 0.93
COL4A1-204ENST00000543140 TTC21AQ8NDW8 1320 aa20.85■□□□□ 0.93
COL4A1-204ENST00000543140 IFT57Q9NWB7 429 aa20.85■□□□□ 0.93
COL4A1-204ENST00000543140 USP31Q70CQ4 1352 aa20.85■□□□□ 0.93
COL4A1-204ENST00000543140 NUTM2GQ5VZR2 741 aa20.85■□□□□ 0.93
COL4A1-204ENST00000543140 ANKLE2Q86XL3 938 aa20.85■□□□□ 0.93
COL4A1-204ENST00000543140 MAP3K19Q56UN5 1328 aa20.84■□□□□ 0.93
COL4A1-204ENST00000543140 LMOD3Q0VAK6 560 aa20.84■□□□□ 0.93
COL4A1-204ENST00000543140 TMEM57Q8N5G2 664 aa20.84■□□□□ 0.93
COL4A1-204ENST00000543140 KIF16BQ96L93 1317 aa20.84■□□□□ 0.93
COL4A1-204ENST00000543140 VAMP4O75379 141 aa20.83■□□□□ 0.93
COL4A1-204ENST00000543140 ZNF853P0CG23 659 aa20.83■□□□□ 0.93
COL4A1-204ENST00000543140 ALDH1L2Q3SY69 923 aa20.83■□□□□ 0.93
COL4A1-204ENST00000543140 RWDD1Q9H446 243 aaPredicted RBP20.83■□□□□ 0.92
COL4A1-204ENST00000543140 IPO8O15397 1037 aaKnown RBP20.82■□□□□ 0.92
COL4A1-204ENST00000543140 NLRP6P59044 892 aa20.82■□□□□ 0.92
COL4A1-204ENST00000543140 CFAP44Q96MT7 982 aa20.82■□□□□ 0.92
COL4A1-204ENST00000543140 DDX19BQ9UMR2 479 aa20.81■□□□□ 0.92
COL4A1-204ENST00000543140 PIK3R4Q99570 1358 aa20.8■□□□□ 0.92
COL4A1-204ENST00000543140 C8orf58Q8NAV2 365 aa20.8■□□□□ 0.92
COL4A1-204ENST00000543140 PIK3C2AO00443 1686 aa20.8■□□□□ 0.92
COL4A1-204ENST00000543140 AMPHP49418 695 aa20.79■□□□□ 0.92
COL4A1-204ENST00000543140 PDZRN3Q9UPQ7 1066 aa20.79■□□□□ 0.92
COL4A1-204ENST00000543140 TWISTNBQ3B726 338 aaPredicted RBP20.79■□□□□ 0.92
COL4A1-204ENST00000543140 MCM10Q7L590 875 aa20.79■□□□□ 0.92
COL4A1-204ENST00000543140 ZNF428Q96B54 188 aa20.78■□□□□ 0.92
COL4A1-204ENST00000543140 ANKARQ7Z5J8 1434 aa20.78■□□□□ 0.92
COL4A1-204ENST00000543140 FMN2Q9NZ56 1722 aa20.78■□□□□ 0.92
COL4A1-204ENST00000543140 C14orf37Q86TY3 774 aa20.77■□□□□ 0.92
COL4A1-204ENST00000543140 MRPL50Q8N5N7 158 aaKnown RBP20.77■□□□□ 0.92
COL4A1-204ENST00000543140 CHD2O14647 1828 aaKnown RBP20.77■□□□□ 0.92
COL4A1-204ENST00000543140 RGPD1P0DJD0 1748 aa20.77■□□□□ 0.91
COL4A1-204ENST00000543140 FLT4P35916 1363 aa20.77■□□□□ 0.91
COL4A1-204ENST00000543140 ABTB2Q8N961 1025 aa20.76■□□□□ 0.91
COL4A1-204ENST00000543140 SBNO1A3KN83 1393 aa20.76■□□□□ 0.91
COL4A1-204ENST00000543140 ZBTB40Q9NUA8 1239 aa20.75■□□□□ 0.91
COL4A1-204ENST00000543140 FOXO3O43524 673 aa20.74■□□□□ 0.91
COL4A1-204ENST00000543140 SETD1BQ9UPS6 1966 aaKnown RBP20.74■□□□□ 0.91
COL4A1-204ENST00000543140 BRPF1P55201 1214 aaPredicted RBP20.74■□□□□ 0.91
COL4A1-204ENST00000543140 KRT24Q2M2I5 525 aa20.74■□□□□ 0.91
COL4A1-204ENST00000543140 ADAMTSL3P82987 1691 aa20.74■□□□□ 0.91
COL4A1-204ENST00000543140 EYA1Q99502 592 aa20.73■□□□□ 0.91
COL4A1-204ENST00000543140 ZNF142P52746 1687 aaPredicted RBP20.73■□□□□ 0.91
COL4A1-204ENST00000543140 PHF8Q9UPP1 1060 aa20.73■□□□□ 0.91
COL4A1-204ENST00000543140 ARHGEF10O15013 1369 aa20.72■□□□□ 0.91
COL4A1-204ENST00000543140 MTHFSDQ2M296 383 aaKnown RBP20.71■□□□□ 0.91
COL4A1-204ENST00000543140 HDAC1Q13547 482 aaPredicted RBP20.71■□□□□ 0.91
COL4A1-204ENST00000543140 NBR1Q14596 966 aa20.71■□□□□ 0.91
COL4A1-204ENST00000543140 LTV1Q96GA3 475 aaPredicted RBP20.7■□□□□ 0.9
COL4A1-204ENST00000543140 MIS18AQ9NYP9 233 aa20.7■□□□□ 0.9
COL4A1-204ENST00000543140 MARF1Q9Y4F3 1742 aaKnown RBP20.7■□□□□ 0.9
COL4A1-204ENST00000543140 VIRMAQ69YN4 1812 aaKnown RBP20.69■□□□□ 0.9
COL4A1-204ENST00000543140 CHL1O00533 1208 aa20.69■□□□□ 0.9
COL4A1-204ENST00000543140 ESCO1Q5FWF5 840 aa20.69■□□□□ 0.9
COL4A1-204ENST00000543140 ARHGAP45Q92619 1136 aa20.69■□□□□ 0.9
COL4A1-204ENST00000543140 SEC24BO95487 1268 aa20.69■□□□□ 0.9
COL4A1-204ENST00000543140 HOXC9P31274 260 aa20.69■□□□□ 0.9
COL4A1-204ENST00000543140 DDRGK1Q96HY6 314 aa20.68■□□□□ 0.9
COL4A1-204ENST00000543140 C1orf115Q9H7X2 142 aa20.68■□□□□ 0.9
COL4A1-204ENST00000543140 IGSF1Q8N6C5 1336 aa20.67■□□□□ 0.9
COL4A1-204ENST00000543140 SLC4A3P48751 1232 aa20.67■□□□□ 0.9
COL4A1-204ENST00000543140 ZBTB7BO15156 539 aaPredicted RBP20.67■□□□□ 0.9
COL4A1-204ENST00000543140 KDRP35968 1356 aa20.66■□□□□ 0.9
COL4A1-204ENST00000543140 RTF1Q92541 710 aaKnown RBP20.66■□□□□ 0.9
COL4A1-204ENST00000543140 PLEKHG5O94827 1062 aa20.66■□□□□ 0.9
COL4A1-204ENST00000543140 PSME1Q06323 249 aa20.66■□□□□ 0.9
COL4A1-204ENST00000543140 NPHP4O75161 1426 aaPredicted RBP20.65■□□□□ 0.9
COL4A1-204ENST00000543140 ABCC4O15439 1325 aa20.64■□□□□ 0.89
COL4A1-204ENST00000543140 CRB1P82279 1406 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms