RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PIK3C2BO00750 1634 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 LTKP29376 864 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 ESCO1Q5FWF5 840 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 C1orf115Q9H7X2 142 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 TTC21AQ8NDW8 1320 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 MCM10Q7L590 875 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 PPLO60437 1756 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 RIMBP3CA6NJZ7 1639 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 RIMBP3BA6NNM3 1639 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 RIMBP3Q9UFD9 1639 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 ATP7BP35670 1465 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 HSP90AB2PQ58FF8 381 aa13.44□□□□□ -0.26
CLIP1-213ENST00000540338 FAM83GA6ND36 823 aa13.43□□□□□ -0.26
CLIP1-213ENST00000540338 AGLP35573 1532 aa13.43□□□□□ -0.26
CLIP1-213ENST00000540338 EIF4A2Q14240 407 aaKnown RBP13.43□□□□□ -0.26
CLIP1-213ENST00000540338 C8orf34Q49A92 452 aa13.43□□□□□ -0.26
CLIP1-213ENST00000540338 PHF23Q9BUL5 403 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-213ENST00000540338 C22orf23Q9BZE7 217 aa13.42□□□□□ -0.26
CLIP1-213ENST00000540338 ARHGAP45Q92619 1136 aa13.42□□□□□ -0.26
CLIP1-213ENST00000540338 PTPRMP28827 1452 aa13.42□□□□□ -0.26
CLIP1-213ENST00000540338 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
CLIP1-213ENST00000540338 TEFQ10587 303 aa13.42□□□□□ -0.26
CLIP1-213ENST00000540338 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 HDAC1Q13547 482 aaPredicted RBP13.41□□□□□ -0.26
CLIP1-213ENST00000540338 VAMP4O75379 141 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 FKBP5Q13451 457 aaPredicted RBP13.41□□□□□ -0.26
CLIP1-213ENST00000540338 CHD1LQ86WJ1 897 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 AEBP1Q8IUX7 1158 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 NECTIN2Q92692 538 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 FAM135BQ49AJ0 1406 aa13.41□□□□□ -0.26
CLIP1-213ENST00000540338 C1orf141Q5JVX7 400 aa13.4□□□□□ -0.26
CLIP1-213ENST00000540338 PHF8Q9UPP1 1060 aa13.4□□□□□ -0.26
CLIP1-213ENST00000540338 OS9Q13438 667 aaPredicted RBP13.4□□□□□ -0.27
CLIP1-213ENST00000540338 DIP2BQ9P265 1576 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 CSB-PGBD3P0DP91 1061 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 CCDC30Q5VVM6 783 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 MYO3AQ8NEV4 1616 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 MRPL50Q8N5N7 158 aaKnown RBP13.39□□□□□ -0.27
CLIP1-213ENST00000540338 PREX1Q8TCU6 1659 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 AATKQ6ZMQ8 1374 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 PLEKHG1Q9ULL1 1385 aa13.39□□□□□ -0.27
CLIP1-213ENST00000540338 TSPYL6Q8N831 410 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 C8orf58Q8NAV2 365 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 MIS18AQ9NYP9 233 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 EIF2S2P20042 333 aaKnown RBP13.38□□□□□ -0.27
CLIP1-213ENST00000540338 PROSER2Q86WR7 435 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-213ENST00000540338 MED14O60244 1454 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 ARHGEF40Q8TER5 1519 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 NFKBIBQ15653 356 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 ROBO2Q9HCK4 1378 aa13.38□□□□□ -0.27
CLIP1-213ENST00000540338 RICTORQ6R327 1708 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 GOLGA6L22H0YM25 854 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 GNAT3A8MTJ3 354 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 KCNA6P17658 529 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 ZBTB40Q9NUA8 1239 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 MYOM1P52179 1685 aa13.37□□□□□ -0.27
CLIP1-213ENST00000540338 CLTCQ00610 1675 aaKnown RBP13.36□□□□□ -0.27
CLIP1-213ENST00000540338 PRR36Q9H6K5 1346 aa13.36□□□□□ -0.27
CLIP1-213ENST00000540338 TMEM131LA2VDJ0 1609 aa13.36□□□□□ -0.27
CLIP1-213ENST00000540338 MAP3K19Q56UN5 1328 aa13.36□□□□□ -0.27
CLIP1-213ENST00000540338 CCT4P50991 539 aaKnown RBP13.36□□□□□ -0.27
CLIP1-213ENST00000540338 RPAP2Q8IXW5 612 aaPredicted RBP13.36□□□□□ -0.27
CLIP1-213ENST00000540338 RBM33Q96EV2 1170 aaKnown RBP13.36□□□□□ -0.27
CLIP1-213ENST00000540338 ARXQ96QS3 562 aa13.36□□□□□ -0.27
CLIP1-213ENST00000540338 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
CLIP1-213ENST00000540338 FLT4P35916 1363 aa13.35□□□□□ -0.27
CLIP1-213ENST00000540338 NLRP1Q9C000 1473 aa13.35□□□□□ -0.27
CLIP1-213ENST00000540338 KCNH5Q8NCM2 988 aa13.35□□□□□ -0.27
CLIP1-213ENST00000540338 PNPLA6Q8IY17 1366 aa13.35□□□□□ -0.27
CLIP1-213ENST00000540338 PLEKHO1Q53GL0 409 aaPredicted RBP13.35□□□□□ -0.27
CLIP1-213ENST00000540338 GNAI3P08754 354 aa13.34□□□□□ -0.27
CLIP1-213ENST00000540338 MCCP23508 829 aa13.34□□□□□ -0.27
CLIP1-213ENST00000540338 DLC1Q96QB1 1528 aa13.34□□□□□ -0.27
CLIP1-213ENST00000540338 CDC45O75419 566 aa13.34□□□□□ -0.27
CLIP1-213ENST00000540338 ATF3P18847 181 aa13.34□□□□□ -0.27
CLIP1-213ENST00000540338 SMC5Q8IY18 1101 aa13.33□□□□□ -0.27
CLIP1-213ENST00000540338 IFT172Q9UG01 1749 aa13.33□□□□□ -0.27
CLIP1-213ENST00000540338 PTPRCP08575 1304 aa13.33□□□□□ -0.28
CLIP1-213ENST00000540338 TRIM6-TRIM34B2RNG4 842 aa13.33□□□□□ -0.28
CLIP1-213ENST00000540338 GNAI2P04899 355 aa13.32□□□□□ -0.28
CLIP1-213ENST00000540338 NUCB1Q02818 461 aa13.32□□□□□ -0.28
CLIP1-213ENST00000540338 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
CLIP1-213ENST00000540338 MTHFSDQ2M296 383 aaKnown RBP13.32□□□□□ -0.28
CLIP1-213ENST00000540338 ARHGEF28Q8N1W1 1705 aaKnown RBP13.32□□□□□ -0.28
CLIP1-213ENST00000540338 GSE1Q14687 1217 aa13.31□□□□□ -0.28
CLIP1-213ENST00000540338 TAF7Q15545 349 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-213ENST00000540338 EYA1Q99502 592 aa13.31□□□□□ -0.28
CLIP1-213ENST00000540338 SPATA31D1Q6ZQQ2 1576 aa13.31□□□□□ -0.28
CLIP1-213ENST00000540338 INTS3Q68E01 1043 aaKnown RBP13.31□□□□□ -0.28
CLIP1-213ENST00000540338 ZNF530Q6P9A1 599 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-213ENST00000540338 CHMP5Q9NZZ3 219 aa13.31□□□□□ -0.28
CLIP1-213ENST00000540338 ZBTB7BO15156 539 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-213ENST00000540338 XPCQ01831 940 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-213ENST00000540338 UBTFL1P0CB47 393 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-213ENST00000540338 USHBP1Q8N6Y0 703 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 FOXO3O43524 673 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 RAPGEF4Q8WZA2 1011 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 GBP4Q96PP9 640 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 SBNO1A3KN83 1393 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 CDK12Q9NYV4 1490 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms