RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 KDM4AO75164 1064 aa14.97□□□□□ -0.01
USP3-203ENST00000538686 CT47B1P0C2W7 299 aaPredicted RBP14.97□□□□□ -0.01
USP3-203ENST00000538686 GUCY2CP25092 1073 aa14.97□□□□□ -0.01
USP3-203ENST00000538686 DZIP1LQ8IYY4 767 aaKnown RBP14.97□□□□□ -0.01
USP3-203ENST00000538686 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
USP3-203ENST00000538686 BMS1Q14692 1282 aaKnown RBP14.97□□□□□ -0.01
USP3-203ENST00000538686 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.97□□□□□ -0.01
USP3-203ENST00000538686 ST18O60284 1047 aa14.96□□□□□ -0.01
USP3-203ENST00000538686 KCNG1Q9UIX4 513 aa14.96□□□□□ -0.01
USP3-203ENST00000538686 CEP83Q9Y592 693 aa14.96□□□□□ -0.01
USP3-203ENST00000538686 HTATSF1O43719 755 aaKnown RBP14.96□□□□□ -0.02
USP3-203ENST00000538686 WDR63Q8IWG1 891 aa14.96□□□□□ -0.02
USP3-203ENST00000538686 HOMEZQ8IX15 550 aa14.96□□□□□ -0.02
USP3-203ENST00000538686 BANK1Q8NDB2 785 aa14.95□□□□□ -0.02
USP3-203ENST00000538686 SIRT1Q96EB6 747 aa14.95□□□□□ -0.02
USP3-203ENST00000538686 KDM2AQ9Y2K7 1162 aa14.95□□□□□ -0.02
USP3-203ENST00000538686 WDR7Q9Y4E6 1490 aa14.95□□□□□ -0.02
USP3-203ENST00000538686 ATAD2Q6PL18 1390 aa14.95□□□□□ -0.02
USP3-203ENST00000538686 CCDC172P0C7W6 258 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 CARD10Q9BWT7 1032 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 PYCARDQ9ULZ3 195 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 PLB1Q6P1J6 1458 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 PTPRGP23470 1445 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 NOM1Q5C9Z4 860 aaKnown RBP14.94□□□□□ -0.02
USP3-203ENST00000538686 TBC1D9Q6ZT07 1266 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 CHD1LQ86WJ1 897 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 CNKSR2Q8WXI2 1034 aa14.94□□□□□ -0.02
USP3-203ENST00000538686 RBM42Q9BTD8 480 aaKnown RBP14.94□□□□□ -0.02
USP3-203ENST00000538686 NSFL1CQ9UNZ2 370 aaKnown RBP14.94□□□□□ -0.02
USP3-203ENST00000538686 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.93□□□□□ -0.02
USP3-203ENST00000538686 CDC45O75419 566 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 GPS2Q13227 327 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 KMT5BQ4FZB7 885 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 CCDC183Q5T5S1 534 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 KCNF1Q9H3M0 494 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 DMRT2Q9Y5R5 561 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 MAGI2Q86UL8 1455 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 LAMC3Q9Y6N6 1575 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 TPM4P67936 248 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 ZBTB9Q96C00 473 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 CHMP4CQ96CF2 233 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 ZDHHC9Q9Y397 364 aa14.93□□□□□ -0.02
USP3-203ENST00000538686 NUP160Q12769 1436 aa14.92□□□□□ -0.02
USP3-203ENST00000538686 KIF1CO43896 1103 aaKnown RBP14.92□□□□□ -0.02
USP3-203ENST00000538686 PKP1Q13835 747 aa14.92□□□□□ -0.02
USP3-203ENST00000538686 TRERF1Q96PN7 1200 aa14.92□□□□□ -0.02
USP3-203ENST00000538686 TNNT1P13805 278 aa14.91□□□□□ -0.02
USP3-203ENST00000538686 GRIPAP1Q4V328 841 aa14.91□□□□□ -0.02
USP3-203ENST00000538686 ERO1AQ96HE7 468 aa14.91□□□□□ -0.02
USP3-203ENST00000538686 MYO1CO00159 1063 aa14.91□□□□□ -0.02
USP3-203ENST00000538686 MNS1Q8NEH6 495 aa14.91□□□□□ -0.02
USP3-203ENST00000538686 V9GYY5 206 aaPredicted RBP14.91□□□□□ -0.02
USP3-203ENST00000538686 ANKRD50Q9ULJ7 1429 aa14.9□□□□□ -0.02
USP3-203ENST00000538686 A0A1B0GUL7 405 aa14.9□□□□□ -0.02
USP3-203ENST00000538686 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.9□□□□□ -0.02
USP3-203ENST00000538686 CLTCL1P53675 1640 aa14.9□□□□□ -0.02
USP3-203ENST00000538686 RBM6P78332 1123 aaKnown RBP14.89□□□□□ -0.03
USP3-203ENST00000538686 CROCC2H7BZ55 1655 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 CCDC27Q2M243 656 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 MPNDQ8N594 471 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 GCC1Q96CN9 775 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 POLKQ9UBT6 870 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 TNNQ9UQP3 1299 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 ABCA10Q8WWZ4 1543 aa14.89□□□□□ -0.03
USP3-203ENST00000538686 BRD1O95696 1058 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 SATB1Q01826 763 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 PHF23Q9BUL5 403 aaPredicted RBP14.88□□□□□ -0.03
USP3-203ENST00000538686 MCM2P49736 904 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 SYT10Q6XYQ8 523 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 CCDC91Q7Z6B0 441 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 LNPKQ9C0E8 428 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 DEF6Q9H4E7 631 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 DONSONQ9NYP3 566 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 JRKLQ9Y4A0 524 aa14.88□□□□□ -0.03
USP3-203ENST00000538686 PATL2C9JE40 543 aaKnown RBP14.87□□□□□ -0.03
USP3-203ENST00000538686 MX1P20591 662 aa14.87□□□□□ -0.03
USP3-203ENST00000538686 FBXO38Q6PIJ6 1188 aa14.87□□□□□ -0.03
USP3-203ENST00000538686 TMEM87AQ8NBN3 555 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 ZNF446Q9NWS9 450 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 CCDC171Q6TFL3 1326 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 HSP90AB3PQ58FF7 597 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 CT47A1Q5JQC4 288 aaPredicted RBP14.86□□□□□ -0.03
USP3-203ENST00000538686 KRBA2Q6ZNG9 492 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 C10orf67Q8IYJ2 551 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 C16orf45Q96MC5 204 aaPredicted RBP14.86□□□□□ -0.03
USP3-203ENST00000538686 IFT57Q9NWB7 429 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 ATP10AO60312 1499 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 IQSEC2Q5JU85 1478 aa14.86□□□□□ -0.03
USP3-203ENST00000538686 POLR3AO14802 1390 aaPredicted RBP14.85□□□□□ -0.03
USP3-203ENST00000538686 HCLS1P14317 486 aaPredicted RBP14.85□□□□□ -0.03
USP3-203ENST00000538686 CEP135Q66GS9 1140 aa14.85□□□□□ -0.03
USP3-203ENST00000538686 ITPRIPQ8IWB1 547 aa14.85□□□□□ -0.03
USP3-203ENST00000538686 TTC31Q49AM3 519 aaPredicted RBP14.85□□□□□ -0.03
USP3-203ENST00000538686 ZGPATQ8N5A5 531 aaKnown RBP14.85□□□□□ -0.03
USP3-203ENST00000538686 GOLGA5Q8TBA6 731 aa14.85□□□□□ -0.03
USP3-203ENST00000538686 ATG3Q9NT62 314 aa14.85□□□□□ -0.03
USP3-203ENST00000538686 ZBTB40Q9NUA8 1239 aa14.85□□□□□ -0.03
USP3-203ENST00000538686 NUP155O75694 1391 aa14.84□□□□□ -0.03
USP3-203ENST00000538686 ATP8B1O43520 1251 aa14.84□□□□□ -0.03
USP3-203ENST00000538686 ATP2B1P20020 1258 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms