RNA–Protein interactions for RNA: ENST00000536241.1

CDCA3-206, Transcript of cell division cycle associated 3, humanhuman

TSL 5

Gene CDCA3, Length 1,490 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-206ENST00000536241 ADAMTS8Q9UP79 889 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 NUDCQ9Y266 331 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 PHRF1Q9P1Y6 1649 aaKnown RBP15.4■□□□□ 0.06
CDCA3-206ENST00000536241 PEAK1Q9H792 1746 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 CRYBG1Q9Y4K1 1723 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 KIF24Q5T7B8 1368 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 ADAMTS2O95450 1211 aa15.4■□□□□ 0.06
CDCA3-206ENST00000536241 WDR43Q15061 677 aaKnown RBP eCLIP15.4■□□□□ 0.06
CDCA3-206ENST00000536241 CPDO75976 1380 aa15.39■□□□□ 0.05
CDCA3-206ENST00000536241 FBXO41Q8TF61 875 aa15.39■□□□□ 0.05
CDCA3-206ENST00000536241 LTN1O94822 1766 aa15.39■□□□□ 0.05
CDCA3-206ENST00000536241 CDK12Q9NYV4 1490 aaPredicted RBP15.38■□□□□ 0.05
CDCA3-206ENST00000536241 U2AF1L5P0DN76 240 aaPredicted RBP15.38■□□□□ 0.05
CDCA3-206ENST00000536241 U2AF1Q01081 240 aaKnown RBP eCLIP15.38■□□□□ 0.05
CDCA3-206ENST00000536241 COL3A1P02461 1466 aaPredicted RBP15.38■□□□□ 0.05
CDCA3-206ENST00000536241 COL22A1Q8NFW1 1626 aaPredicted RBP15.38■□□□□ 0.05
CDCA3-206ENST00000536241 RTL1A6NKG5 1358 aa15.37■□□□□ 0.05
CDCA3-206ENST00000536241 ANKRD24Q8TF21 1146 aa15.36■□□□□ 0.05
CDCA3-206ENST00000536241 SPATA31A6Q5VVP1 1343 aa15.35■□□□□ 0.05
CDCA3-206ENST00000536241 EYA1Q99502 592 aa15.35■□□□□ 0.05
CDCA3-206ENST00000536241 ABCA3Q99758 1704 aa15.35■□□□□ 0.05
CDCA3-206ENST00000536241 HMOX1P09601 288 aa15.34■□□□□ 0.05
CDCA3-206ENST00000536241 SHPRHQ149N8 1683 aa15.34■□□□□ 0.05
CDCA3-206ENST00000536241 COL18A1P39060 1754 aa15.34■□□□□ 0.05
CDCA3-206ENST00000536241 EVA1CP58658 441 aa15.33■□□□□ 0.05
CDCA3-206ENST00000536241 NBPF6Q5VWK0 638 aa15.33■□□□□ 0.05
CDCA3-206ENST00000536241 NBPF4Q96M43 638 aa15.33■□□□□ 0.05
CDCA3-206ENST00000536241 BTG4Q9NY30 223 aa15.33■□□□□ 0.05
CDCA3-206ENST00000536241 RGPD5Q99666 1765 aa15.33■□□□□ 0.04
CDCA3-206ENST00000536241 BLMP54132 1417 aaPredicted RBP15.33■□□□□ 0.04
CDCA3-206ENST00000536241 CSB-PGBD3P0DP91 1061 aa15.33■□□□□ 0.04
CDCA3-206ENST00000536241 CCDC146Q8IYE0 955 aa15.33■□□□□ 0.04
CDCA3-206ENST00000536241 YTHDC1Q96MU7 727 aaKnown RBP15.33■□□□□ 0.04
CDCA3-206ENST00000536241 CAMTA1Q9Y6Y1 1673 aa15.32■□□□□ 0.04
CDCA3-206ENST00000536241 SENP3-EIF4A1A0A087X0R7 540 aa15.32■□□□□ 0.04
CDCA3-206ENST00000536241 FCHSD2O94868 740 aa15.32■□□□□ 0.04
CDCA3-206ENST00000536241 SULT6B1Q6IMI4 303 aa15.32■□□□□ 0.04
CDCA3-206ENST00000536241 STRN4Q9NRL3 753 aa15.32■□□□□ 0.04
CDCA3-206ENST00000536241 ERBB3P21860 1342 aa15.31■□□□□ 0.04
CDCA3-206ENST00000536241 AEBP1Q8IUX7 1158 aa15.31■□□□□ 0.04
CDCA3-206ENST00000536241 USHBP1Q8N6Y0 703 aa15.31■□□□□ 0.04
CDCA3-206ENST00000536241 NLRP2Q9NX02 1062 aa15.31■□□□□ 0.04
CDCA3-206ENST00000536241 NGLY1Q96IV0 654 aa15.3■□□□□ 0.04
CDCA3-206ENST00000536241 C8orf37Q96NL8 207 aa15.3■□□□□ 0.04
CDCA3-206ENST00000536241 PLEKHF1Q96S99 279 aa15.29■□□□□ 0.04
CDCA3-206ENST00000536241 RSPH6AQ9H0K4 717 aa15.29■□□□□ 0.04
CDCA3-206ENST00000536241 IGSF1Q8N6C5 1336 aa15.29■□□□□ 0.04
CDCA3-206ENST00000536241 PRKAR2BP31323 418 aa15.28■□□□□ 0.04
CDCA3-206ENST00000536241 MEX3CQ5U5Q3 659 aaKnown RBP15.28■□□□□ 0.04
CDCA3-206ENST00000536241 LARP1Q6PKG0 1096 aaKnown RBP15.28■□□□□ 0.04
CDCA3-206ENST00000536241 TOM1L2Q6ZVM7 507 aa15.28■□□□□ 0.04
CDCA3-206ENST00000536241 RUNDC1Q96C34 613 aa15.28■□□□□ 0.04
CDCA3-206ENST00000536241 PNNQ9H307 717 aaKnown RBP15.28■□□□□ 0.04
CDCA3-206ENST00000536241 LRP6O75581 1613 aa15.27■□□□□ 0.04
CDCA3-206ENST00000536241 LMO7Q8WWI1 1683 aa15.27■□□□□ 0.04
CDCA3-206ENST00000536241 WDR17Q8IZU2 1322 aa15.27■□□□□ 0.04
CDCA3-206ENST00000536241 APAF1O14727 1248 aa15.27■□□□□ 0.03
CDCA3-206ENST00000536241 HNRNPUQ00839 825 aaKnown RBP eCLIP15.27■□□□□ 0.03
CDCA3-206ENST00000536241 PHACTR3Q96KR7 559 aa15.27■□□□□ 0.03
CDCA3-206ENST00000536241 ABCC6O95255 1503 aa15.26■□□□□ 0.03
CDCA3-206ENST00000536241 RGPD2P0DJD1 1756 aa15.26■□□□□ 0.03
CDCA3-206ENST00000536241 COL14A1Q05707 1796 aaKnown RBP15.26■□□□□ 0.03
CDCA3-206ENST00000536241 COL5A2P05997 1499 aaPredicted RBP15.26■□□□□ 0.03
CDCA3-206ENST00000536241 SALL2Q9Y467 1007 aaPredicted RBP15.26■□□□□ 0.03
CDCA3-206ENST00000536241 FNBP4Q8N3X1 1017 aaPredicted RBP15.25■□□□□ 0.03
CDCA3-206ENST00000536241 TCP11L2Q8N4U5 519 aa15.25■□□□□ 0.03
CDCA3-206ENST00000536241 USP35Q9P2H5 1018 aa15.25■□□□□ 0.03
CDCA3-206ENST00000536241 NEFMP07197 916 aa15.24■□□□□ 0.03
CDCA3-206ENST00000536241 UNC5CLQ8IV45 518 aa15.24■□□□□ 0.03
CDCA3-206ENST00000536241 CARD10Q9BWT7 1032 aa15.24■□□□□ 0.03
CDCA3-206ENST00000536241 RGPD1P0DJD0 1748 aa15.24■□□□□ 0.03
CDCA3-206ENST00000536241 KDRP35968 1356 aa15.24■□□□□ 0.03
CDCA3-206ENST00000536241 NEUROD2Q15784 382 aa15.23■□□□□ 0.03
CDCA3-206ENST00000536241 USP21Q9UK80 565 aa15.23■□□□□ 0.03
CDCA3-206ENST00000536241 RRP7AQ9Y3A4 280 aaKnown RBP15.23■□□□□ 0.03
CDCA3-206ENST00000536241 MAPK8IP3Q9UPT6 1336 aa15.23■□□□□ 0.03
CDCA3-206ENST00000536241 SLIT2O94813 1529 aa15.23■□□□□ 0.03
CDCA3-206ENST00000536241 CRB1P82279 1406 aa15.21■□□□□ 0.02
CDCA3-206ENST00000536241 AFF2P51816 1311 aa15.21■□□□□ 0.02
CDCA3-206ENST00000536241 TMPOP42166 694 aaKnown RBP15.2■□□□□ 0.02
CDCA3-206ENST00000536241 RAPGEF4Q8WZA2 1011 aa15.2■□□□□ 0.02
CDCA3-206ENST00000536241 CCDC9Q9Y3X0 531 aaKnown RBP15.2■□□□□ 0.02
CDCA3-206ENST00000536241 PLCH1Q4KWH8 1693 aa15.2■□□□□ 0.02
CDCA3-206ENST00000536241 BCL9LQ86UU0 1499 aa15.2■□□□□ 0.02
CDCA3-206ENST00000536241 TATP17735 454 aaPredicted RBP15.2■□□□□ 0.02
CDCA3-206ENST00000536241 RIPK4P57078 832 aa15.2■□□□□ 0.02
CDCA3-206ENST00000536241 MTHFSDQ2M296 383 aaKnown RBP15.2■□□□□ 0.02
CDCA3-206ENST00000536241 NCAPD2Q15021 1401 aa15.19■□□□□ 0.02
CDCA3-206ENST00000536241 NFE2L2Q16236 605 aa15.19■□□□□ 0.02
CDCA3-206ENST00000536241 PLEKHO1Q53GL0 409 aaPredicted RBP15.19■□□□□ 0.02
CDCA3-206ENST00000536241 SPATA31A1Q5TZJ5 1347 aa15.18■□□□□ 0.02
CDCA3-206ENST00000536241 VPS72Q15906 364 aa15.18■□□□□ 0.02
CDCA3-206ENST00000536241 SPATA31A5Q5VU36 1347 aa15.17■□□□□ 0.02
CDCA3-206ENST00000536241 SPATA31A7Q8IWB4 1347 aa15.17■□□□□ 0.02
CDCA3-206ENST00000536241 IL2RBP14784 551 aa15.17■□□□□ 0.02
CDCA3-206ENST00000536241 NWD2Q9ULI1 1742 aa15.17■□□□□ 0.02
CDCA3-206ENST00000536241 FAM208AQ9UK61 1670 aaKnown RBP15.17■□□□□ 0.02
CDCA3-206ENST00000536241 AMOTQ4VCS5 1084 aa15.16■□□□□ 0.02
CDCA3-206ENST00000536241 ILDR1Q86SU0 546 aaPredicted RBP15.16■□□□□ 0.02
CDCA3-206ENST00000536241 NRAPQ86VF7 1730 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms