RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-204ENST00000536079 CCDC9Q9Y3X0 531 aaKnown RBP24.64■■□□□ 1.54
DDX55-204ENST00000536079 COL5A2P05997 1499 aaPredicted RBP24.63■■□□□ 1.53
DDX55-204ENST00000536079 SPATA31A5Q5VU36 1347 aa24.62■■□□□ 1.53
DDX55-204ENST00000536079 SPATA31A7Q8IWB4 1347 aa24.62■■□□□ 1.53
DDX55-204ENST00000536079 PER1O15534 1290 aaPredicted RBP24.62■■□□□ 1.53
DDX55-204ENST00000536079 RRS1Q15050 365 aaKnown RBP24.62■■□□□ 1.53
DDX55-204ENST00000536079 MAP3K19Q56UN5 1328 aa24.61■■□□□ 1.53
DDX55-204ENST00000536079 EVA1CP58658 441 aa24.61■■□□□ 1.53
DDX55-204ENST00000536079 AMER1Q5JTC6 1135 aaPredicted RBP24.59■■□□□ 1.53
DDX55-204ENST00000536079 SPATA31A1Q5TZJ5 1347 aa24.59■■□□□ 1.53
DDX55-204ENST00000536079 CDK12Q9NYV4 1490 aaPredicted RBP24.58■■□□□ 1.53
DDX55-204ENST00000536079 RGPD5Q99666 1765 aa24.58■■□□□ 1.53
DDX55-204ENST00000536079 LTN1O94822 1766 aa24.57■■□□□ 1.52
DDX55-204ENST00000536079 USP35Q9P2H5 1018 aa24.57■■□□□ 1.52
DDX55-204ENST00000536079 KNSTRNQ9Y448 316 aa24.57■■□□□ 1.52
DDX55-204ENST00000536079 FAM98CQ17RN3 349 aaKnown RBP24.56■■□□□ 1.52
DDX55-204ENST00000536079 ONECUT3O60422 494 aaPredicted RBP24.55■■□□□ 1.52
DDX55-204ENST00000536079 TNNT2P45379 298 aaPredicted RBP24.55■■□□□ 1.52
DDX55-204ENST00000536079 IP6K1Q92551 441 aa24.55■■□□□ 1.52
DDX55-204ENST00000536079 HOXC9P31274 260 aa24.54■■□□□ 1.52
DDX55-204ENST00000536079 EMILIN1Q9Y6C2 1016 aa24.54■■□□□ 1.52
DDX55-204ENST00000536079 ABCC6O95255 1503 aa24.53■■□□□ 1.52
DDX55-204ENST00000536079 WDR17Q8IZU2 1322 aa24.53■■□□□ 1.52
DDX55-204ENST00000536079 AMPHP49418 695 aa24.52■■□□□ 1.52
DDX55-204ENST00000536079 SEPT12Q8IYM1 358 aa24.52■■□□□ 1.52
DDX55-204ENST00000536079 ANKRD24Q8TF21 1146 aa24.52■■□□□ 1.52
DDX55-204ENST00000536079 PEAK1Q9H792 1746 aa24.52■■□□□ 1.52
DDX55-204ENST00000536079 TOM1L2Q6ZVM7 507 aa24.51■■□□□ 1.51
DDX55-204ENST00000536079 LTV1Q96GA3 475 aaPredicted RBP24.51■■□□□ 1.51
DDX55-204ENST00000536079 ERBB3P21860 1342 aa24.51■■□□□ 1.51
DDX55-204ENST00000536079 CRB1P82279 1406 aa24.51■■□□□ 1.51
DDX55-204ENST00000536079 CSB-PGBD3P0DP91 1061 aa24.5■■□□□ 1.51
DDX55-204ENST00000536079 POLKQ9UBT6 870 aa24.5■■□□□ 1.51
DDX55-204ENST00000536079 NSD2O96028 1365 aa24.5■■□□□ 1.51
DDX55-204ENST00000536079 ANKRD26Q9UPS8 1709 aa24.49■■□□□ 1.51
DDX55-204ENST00000536079 CNGB1Q14028 1251 aaPredicted RBP24.49■■□□□ 1.51
DDX55-204ENST00000536079 HSP90AB2PQ58FF8 381 aa24.49■■□□□ 1.51
DDX55-204ENST00000536079 CC2D1BQ5T0F9 858 aaKnown RBP24.49■■□□□ 1.51
DDX55-204ENST00000536079 TCP11L2Q8N4U5 519 aa24.49■■□□□ 1.51
DDX55-204ENST00000536079 SOCS7O14512 581 aa24.48■■□□□ 1.51
DDX55-204ENST00000536079 MORC1Q86VD1 984 aa24.48■■□□□ 1.51
DDX55-204ENST00000536079 BLMP54132 1417 aaPredicted RBP24.47■■□□□ 1.51
DDX55-204ENST00000536079 RTL1A6NKG5 1358 aa24.46■■□□□ 1.51
DDX55-204ENST00000536079 PPM1GO15355 546 aaPredicted RBP24.46■■□□□ 1.51
DDX55-204ENST00000536079 BARGINQ6ZT62 677 aa24.46■■□□□ 1.51
DDX55-204ENST00000536079 THSD7AQ9UPZ6 1657 aa24.46■■□□□ 1.51
DDX55-204ENST00000536079 A0A0G2JS52 829 aa24.45■■□□□ 1.5
DDX55-204ENST00000536079 MYT1Q01538 1121 aa24.45■■□□□ 1.5
DDX55-204ENST00000536079 CARD10Q9BWT7 1032 aa24.45■■□□□ 1.5
DDX55-204ENST00000536079 NLRP2Q9NX02 1062 aa24.44■■□□□ 1.5
DDX55-204ENST00000536079 BRWD3Q6RI45 1802 aa24.43■■□□□ 1.5
DDX55-204ENST00000536079 THRAP3Q9Y2W1 955 aaKnown RBP24.43■■□□□ 1.5
DDX55-204ENST00000536079 FLT4P35916 1363 aa24.42■■□□□ 1.5
DDX55-204ENST00000536079 INSRP06213 1382 aa24.42■■□□□ 1.5
DDX55-204ENST00000536079 NPC1L1Q9UHC9 1359 aa24.42■■□□□ 1.5
DDX55-204ENST00000536079 MAP2P11137 1827 aaKnown RBP24.41■■□□□ 1.5
DDX55-204ENST00000536079 DDX10Q13206 875 aaKnown RBP24.41■■□□□ 1.5
DDX55-204ENST00000536079 FAM182BQ5T319 152 aa24.41■■□□□ 1.5
DDX55-204ENST00000536079 NBPF6Q5VWK0 638 aa24.4■■□□□ 1.5
DDX55-204ENST00000536079 NBPF4Q96M43 638 aa24.4■■□□□ 1.5
DDX55-204ENST00000536079 KIF24Q5T7B8 1368 aa24.4■■□□□ 1.5
DDX55-204ENST00000536079 DISP2A7MBM2 1401 aa24.39■■□□□ 1.5
DDX55-204ENST00000536079 KRT27Q7Z3Y8 459 aa24.39■■□□□ 1.49
DDX55-204ENST00000536079 SMG6Q86US8 1419 aaKnown RBP24.37■■□□□ 1.49
DDX55-204ENST00000536079 USHBP1Q8N6Y0 703 aa24.37■■□□□ 1.49
DDX55-204ENST00000536079 RGPD2P0DJD1 1756 aa24.37■■□□□ 1.49
DDX55-204ENST00000536079 UPF1Q92900 1129 aaKnown RBP eCLIP24.35■■□□□ 1.49
DDX55-204ENST00000536079 EP400Q96L91 3159 aa24.34■■□□□ 1.49
DDX55-204ENST00000536079 EIF4A2Q14240 407 aaKnown RBP24.34■■□□□ 1.49
DDX55-204ENST00000536079 FAM208AQ9UK61 1670 aaKnown RBP24.34■■□□□ 1.49
DDX55-204ENST00000536079 MTHFSP49914 203 aa24.33■■□□□ 1.49
DDX55-204ENST00000536079 WNK3Q9BYP7 1800 aa24.33■■□□□ 1.48
DDX55-204ENST00000536079 PARP4Q9UKK3 1724 aaKnown RBP24.32■■□□□ 1.48
DDX55-204ENST00000536079 LRRC37A3O60309 1634 aa24.32■■□□□ 1.48
DDX55-204ENST00000536079 EYA1Q99502 592 aa24.31■■□□□ 1.48
DDX55-204ENST00000536079 ZNF316A6NFI3 1004 aaPredicted RBP24.3■■□□□ 1.48
DDX55-204ENST00000536079 IL2RBP14784 551 aa24.3■■□□□ 1.48
DDX55-204ENST00000536079 DDB1Q16531 1140 aa24.29■■□□□ 1.48
DDX55-204ENST00000536079 PDE3BQ13370 1112 aa24.28■■□□□ 1.48
DDX55-204ENST00000536079 MARCH10Q8NA82 808 aaPredicted RBP24.28■■□□□ 1.48
DDX55-204ENST00000536079 CDCA7Q9BWT1 371 aaPredicted RBP24.28■■□□□ 1.48
DDX55-204ENST00000536079 MEGF6O75095 1541 aa24.28■■□□□ 1.48
DDX55-204ENST00000536079 NCAPD2Q15021 1401 aa24.26■■□□□ 1.47
DDX55-204ENST00000536079 EXOC5O00471 708 aa24.25■■□□□ 1.47
DDX55-204ENST00000536079 PPP2R1AP30153 589 aa24.25■■□□□ 1.47
DDX55-204ENST00000536079 IL13P35225 146 aa24.25■■□□□ 1.47
DDX55-204ENST00000536079 TNS2Q63HR2 1409 aa24.23■■□□□ 1.47
DDX55-204ENST00000536079 PARD3Q8TEW0 1356 aa24.22■■□□□ 1.47
DDX55-204ENST00000536079 COL3A1P02461 1466 aaPredicted RBP24.21■■□□□ 1.47
DDX55-204ENST00000536079 IGSF1Q8N6C5 1336 aa24.21■■□□□ 1.47
DDX55-204ENST00000536079 OVOS2A0A0G2JMS6 1433 aa24.2■■□□□ 1.46
DDX55-204ENST00000536079 AEBP1Q8IUX7 1158 aa24.2■■□□□ 1.46
DDX55-204ENST00000536079 FAM196AQ6ZSG2 479 aa24.19■■□□□ 1.46
DDX55-204ENST00000536079 PTF1AQ7RTS3 328 aa24.19■■□□□ 1.46
DDX55-204ENST00000536079 RAPGEF4Q8WZA2 1011 aa24.18■■□□□ 1.46
DDX55-204ENST00000536079 TRIM37O94972 964 aa24.17■■□□□ 1.46
DDX55-204ENST00000536079 TATP17735 454 aaPredicted RBP24.17■■□□□ 1.46
DDX55-204ENST00000536079 ZCRB1Q8TBF4 217 aaKnown RBP24.17■■□□□ 1.46
DDX55-204ENST00000536079 DDX54Q8TDD1 881 aaKnown RBP24.17■■□□□ 1.46
DDX55-204ENST00000536079 RGPD1P0DJD0 1748 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms