RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 AXIN2Q9Y2T1 843 aa34.01■■■■□ 3.03
USP48-214ENST00000532737 LMO7Q8WWI1 1683 aa34■■■■□ 3.03
USP48-214ENST00000532737 VPS72Q15906 364 aa33.99■■■■□ 3.03
USP48-214ENST00000532737 STRN4Q9NRL3 753 aa33.99■■■■□ 3.03
USP48-214ENST00000532737 BRWD3Q6RI45 1802 aa33.98■■■■□ 3.03
USP48-214ENST00000532737 NRAPQ86VF7 1730 aa33.98■■■■□ 3.03
USP48-214ENST00000532737 MAP3K19Q56UN5 1328 aa33.98■■■■□ 3.03
USP48-214ENST00000532737 COL18A1P39060 1754 aa33.98■■■■□ 3.03
USP48-214ENST00000532737 NSD2O96028 1365 aa33.98■■■■□ 3.03
USP48-214ENST00000532737 EVA1CP58658 441 aa33.96■■■■□ 3.03
USP48-214ENST00000532737 RRS1Q15050 365 aaKnown RBP33.95■■■■□ 3.03
USP48-214ENST00000532737 CCDC9Q9Y3X0 531 aaKnown RBP33.94■■■■□ 3.02
USP48-214ENST00000532737 MORC1Q86VD1 984 aa33.92■■■■□ 3.02
USP48-214ENST00000532737 COL5A2P05997 1499 aaPredicted RBP33.92■■■■□ 3.02
USP48-214ENST00000532737 TNNT2P45379 298 aaPredicted RBP33.91■■■■□ 3.02
USP48-214ENST00000532737 LARP1Q6PKG0 1096 aaKnown RBP33.91■■■■□ 3.02
USP48-214ENST00000532737 IP6K1Q92551 441 aa33.91■■■■□ 3.02
USP48-214ENST00000532737 AMPHP49418 695 aa33.9■■■■□ 3.02
USP48-214ENST00000532737 LTN1O94822 1766 aa33.9■■■■□ 3.02
USP48-214ENST00000532737 SPATA31A5Q5VU36 1347 aa33.89■■■■□ 3.02
USP48-214ENST00000532737 SPATA31A7Q8IWB4 1347 aa33.89■■■■□ 3.02
USP48-214ENST00000532737 CC2D1BQ5T0F9 858 aaKnown RBP33.89■■■■□ 3.02
USP48-214ENST00000532737 ANKRD26Q9UPS8 1709 aa33.89■■■■□ 3.02
USP48-214ENST00000532737 ABCC6O95255 1503 aa33.89■■■■□ 3.02
USP48-214ENST00000532737 DDX10Q13206 875 aaKnown RBP33.88■■■■□ 3.01
USP48-214ENST00000532737 HOXC9P31274 260 aa33.87■■■■□ 3.01
USP48-214ENST00000532737 NPC1L1Q9UHC9 1359 aa33.86■■■■□ 3.01
USP48-214ENST00000532737 EMILIN1Q9Y6C2 1016 aa33.86■■■■□ 3.01
USP48-214ENST00000532737 ZNF316A6NFI3 1004 aaPredicted RBP33.85■■■■□ 3.01
USP48-214ENST00000532737 CNGB1Q14028 1251 aaPredicted RBP33.85■■■■□ 3.01
USP48-214ENST00000532737 POLKQ9UBT6 870 aa33.85■■■■□ 3.01
USP48-214ENST00000532737 SPATA31A1Q5TZJ5 1347 aa33.84■■■■□ 3.01
USP48-214ENST00000532737 WDR17Q8IZU2 1322 aa33.84■■■■□ 3.01
USP48-214ENST00000532737 RGPD5Q99666 1765 aa33.83■■■■□ 3.01
USP48-214ENST00000532737 CCDC125Q86Z20 511 aa33.83■■■■□ 3.01
USP48-214ENST00000532737 BLMP54132 1417 aaPredicted RBP33.82■■■■□ 3
USP48-214ENST00000532737 CSB-PGBD3P0DP91 1061 aa33.82■■■■□ 3
USP48-214ENST00000532737 RTL1A6NKG5 1358 aa33.82■■■■□ 3
USP48-214ENST00000532737 ERBB3P21860 1342 aa33.81■■■■□ 3
USP48-214ENST00000532737 ANKRD24Q8TF21 1146 aa33.81■■■■□ 3
USP48-214ENST00000532737 USP35Q9P2H5 1018 aa33.81■■■■□ 3
USP48-214ENST00000532737 PPM1GO15355 546 aaPredicted RBP33.8■■■■□ 3
USP48-214ENST00000532737 TOM1L2Q6ZVM7 507 aa33.8■■■■□ 3
USP48-214ENST00000532737 SRCAPQ6ZRS2 3230 aa33.79■■■■□ 3
USP48-214ENST00000532737 CRB1P82279 1406 aa33.79■■■■□ 3
USP48-214ENST00000532737 HSP90AB2PQ58FF8 381 aa33.79■■■■□ 3
USP48-214ENST00000532737 LTV1Q96GA3 475 aaPredicted RBP33.79■■■■□ 3
USP48-214ENST00000532737 KIF24Q5T7B8 1368 aa33.79■■■■□ 3
USP48-214ENST00000532737 PEAK1Q9H792 1746 aa33.79■■■■□ 3
USP48-214ENST00000532737 FLT4P35916 1363 aa33.78■■■■□ 3
USP48-214ENST00000532737 ONECUT3O60422 494 aaPredicted RBP33.78■■■■□ 3
USP48-214ENST00000532737 FAM98CQ17RN3 349 aaKnown RBP33.78■■■■□ 3
USP48-214ENST00000532737 TCP11L2Q8N4U5 519 aa33.75■■■□□ 2.99
USP48-214ENST00000532737 CARD10Q9BWT7 1032 aa33.75■■■□□ 2.99
USP48-214ENST00000532737 INSRP06213 1382 aa33.74■■■□□ 2.99
USP48-214ENST00000532737 SEPT12Q8IYM1 358 aa33.74■■■□□ 2.99
USP48-214ENST00000532737 MAP2P11137 1827 aaKnown RBP33.74■■■□□ 2.99
USP48-214ENST00000532737 NLRP2Q9NX02 1062 aa33.73■■■□□ 2.99
USP48-214ENST00000532737 BARGINQ6ZT62 677 aa33.71■■■□□ 2.99
USP48-214ENST00000532737 THRAP3Q9Y2W1 955 aaKnown RBP33.71■■■□□ 2.99
USP48-214ENST00000532737 SMG6Q86US8 1419 aaKnown RBP33.7■■■□□ 2.98
USP48-214ENST00000532737 A0A0G2JS52 829 aa33.67■■■□□ 2.98
USP48-214ENST00000532737 MYT1Q01538 1121 aa33.67■■■□□ 2.98
USP48-214ENST00000532737 MTHFSP49914 203 aa33.65■■■□□ 2.98
USP48-214ENST00000532737 NBPF6Q5VWK0 638 aa33.64■■■□□ 2.98
USP48-214ENST00000532737 NBPF4Q96M43 638 aa33.64■■■□□ 2.98
USP48-214ENST00000532737 KRT27Q7Z3Y8 459 aa33.62■■■□□ 2.97
USP48-214ENST00000532737 THSD7AQ9UPZ6 1657 aa33.61■■■□□ 2.97
USP48-214ENST00000532737 EIF4A2Q14240 407 aaKnown RBP33.61■■■□□ 2.97
USP48-214ENST00000532737 DEFB132Q7Z7B7 95 aa33.59■■■□□ 2.97
USP48-214ENST00000532737 PPP2R1AP30153 589 aa33.58■■■□□ 2.97
USP48-214ENST00000532737 USHBP1Q8N6Y0 703 aa33.58■■■□□ 2.97
USP48-214ENST00000532737 DISP2A7MBM2 1401 aa33.58■■■□□ 2.97
USP48-214ENST00000532737 PARD3Q8TEW0 1356 aa33.58■■■□□ 2.97
USP48-214ENST00000532737 FAM208AQ9UK61 1670 aaKnown RBP33.57■■■□□ 2.96
USP48-214ENST00000532737 CDCA7Q9BWT1 371 aaPredicted RBP33.56■■■□□ 2.96
USP48-214ENST00000532737 RGPD2P0DJD1 1756 aa33.55■■■□□ 2.96
USP48-214ENST00000532737 EYA1Q99502 592 aa33.55■■■□□ 2.96
USP48-214ENST00000532737 IL2RBP14784 551 aa33.53■■■□□ 2.96
USP48-214ENST00000532737 SF3B2Q13435 895 aaKnown RBP33.52■■■□□ 2.96
USP48-214ENST00000532737 RGPD1P0DJD0 1748 aa33.51■■■□□ 2.96
USP48-214ENST00000532737 IL13P35225 146 aa33.5■■■□□ 2.95
USP48-214ENST00000532737 DDB1Q16531 1140 aa33.5■■■□□ 2.95
USP48-214ENST00000532737 PDE3BQ13370 1112 aa33.49■■■□□ 2.95
USP48-214ENST00000532737 RALBP1Q15311 655 aa33.49■■■□□ 2.95
USP48-214ENST00000532737 PARP4Q9UKK3 1724 aaKnown RBP33.48■■■□□ 2.95
USP48-214ENST00000532737 WNK3Q9BYP7 1800 aa33.48■■■□□ 2.95
USP48-214ENST00000532737 NCAPD2Q15021 1401 aa33.47■■■□□ 2.95
USP48-214ENST00000532737 FAM182BQ5T319 152 aa33.47■■■□□ 2.95
USP48-214ENST00000532737 TNS1Q9HBL0 1735 aaKnown RBP33.46■■■□□ 2.95
USP48-214ENST00000532737 EXOC5O00471 708 aa33.46■■■□□ 2.95
USP48-214ENST00000532737 IGSF1Q8N6C5 1336 aa33.46■■■□□ 2.95
USP48-214ENST00000532737 MEGF6O75095 1541 aa33.44■■■□□ 2.94
USP48-214ENST00000532737 LRRC37A3O60309 1634 aa33.44■■■□□ 2.94
USP48-214ENST00000532737 DIAPH1O60610 1272 aaKnown RBP33.44■■■□□ 2.94
USP48-214ENST00000532737 COL3A1P02461 1466 aaPredicted RBP33.44■■■□□ 2.94
USP48-214ENST00000532737 RAPGEF4Q8WZA2 1011 aa33.43■■■□□ 2.94
USP48-214ENST00000532737 CFAP53Q96M91 514 aa33.42■■■□□ 2.94
USP48-214ENST00000532737 PRKRIP1Q9H875 184 aaPredicted RBP33.41■■■□□ 2.94
USP48-214ENST00000532737 LRP5O75197 1615 aa33.4■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms