RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	LTN1	O94822	1766 aa		32	■■■□□ 2.71
CAPN1-222	ENST00000532285	USP35	Q9P2H5	1018 aa		32	■■■□□ 2.71
CAPN1-222	ENST00000532285	HSPA5	P11021	654 aa	Known RBP	31.99	■■■□□ 2.71
CAPN1-222	ENST00000532285	ABCC6	O95255	1503 aa		31.99	■■■□□ 2.71
CAPN1-222	ENST00000532285	OVOS2	A0A0J9YW53	1432 aa		31.99	■■■□□ 2.71
CAPN1-222	ENST00000532285	OVOS2	Q6IE36	1432 aa		31.99	■■■□□ 2.71
CAPN1-222	ENST00000532285	BARGIN	Q6ZT62	677 aa		31.98	■■■□□ 2.71
CAPN1-222	ENST00000532285	CCDC125	Q86Z20	511 aa		31.98	■■■□□ 2.71
CAPN1-222	ENST00000532285	AXIN2	Q9Y2T1	843 aa		31.98	■■■□□ 2.71
CAPN1-222	ENST00000532285	TCP11L2	Q8N4U5	519 aa		31.97	■■■□□ 2.71
CAPN1-222	ENST00000532285	CRB1	P82279	1406 aa		31.97	■■■□□ 2.71
CAPN1-222	ENST00000532285	THRAP3	Q9Y2W1	955 aa	Known RBP	31.96	■■■□□ 2.71
CAPN1-222	ENST00000532285	COG3	Q96JB2	828 aa		31.94	■■■□□ 2.7
CAPN1-222	ENST00000532285	WDR17	Q8IZU2	1322 aa		31.92	■■■□□ 2.7
CAPN1-222	ENST00000532285	KIF20B	Q96Q89	1820 aa		31.91	■■■□□ 2.7
CAPN1-222	ENST00000532285	TOM1L2	Q6ZVM7	507 aa		31.91	■■■□□ 2.7
CAPN1-222	ENST00000532285	FYB1	O15117	783 aa		31.88	■■■□□ 2.69
CAPN1-222	ENST00000532285	BLM	P54132	1417 aa	Predicted RBP	31.88	■■■□□ 2.69
CAPN1-222	ENST00000532285	PARP4	Q9UKK3	1724 aa	Known RBP	31.87	■■■□□ 2.69
CAPN1-222	ENST00000532285	CSB-PGBD3	P0DP91	1061 aa		31.86	■■■□□ 2.69
CAPN1-222	ENST00000532285	POLR3GL	Q9BT43	218 aa		31.86	■■■□□ 2.69
CAPN1-222	ENST00000532285	WNK3	Q9BYP7	1800 aa		31.85	■■■□□ 2.69
CAPN1-222	ENST00000532285	CARD14	Q9BXL6	1004 aa		31.84	■■■□□ 2.69
CAPN1-222	ENST00000532285	CARD10	Q9BWT7	1032 aa		31.83	■■■□□ 2.69
CAPN1-222	ENST00000532285	GGNBP2	Q9H3C7	697 aa		31.83	■■■□□ 2.69
CAPN1-222	ENST00000532285	PDE3B	Q13370	1112 aa		31.82	■■■□□ 2.68
CAPN1-222	ENST00000532285	SF3B2	Q13435	895 aa	Known RBP	31.82	■■■□□ 2.68
CAPN1-222	ENST00000532285	NSD3	Q9BZ95	1437 aa		31.82	■■■□□ 2.68
CAPN1-222	ENST00000532285	FAM182B	Q5T319	152 aa		31.81	■■■□□ 2.68
CAPN1-222	ENST00000532285	ERBB3	P21860	1342 aa		31.79	■■■□□ 2.68
CAPN1-222	ENST00000532285	RGPD1	P0DJD0	1748 aa		31.79	■■■□□ 2.68
CAPN1-222	ENST00000532285	IP6K1	Q92551	441 aa		31.79	■■■□□ 2.68
CAPN1-222	ENST00000532285	FAM196A	Q6ZSG2	479 aa		31.78	■■■□□ 2.68
CAPN1-222	ENST00000532285	CDCA7	Q9BWT1	371 aa	Predicted RBP	31.78	■■■□□ 2.68
CAPN1-222	ENST00000532285	CCDC7	Q96M83	1385 aa		31.77	■■■□□ 2.68
CAPN1-222	ENST00000532285	MAP3K19	Q56UN5	1328 aa		31.76	■■■□□ 2.68
CAPN1-222	ENST00000532285	ANKRD24	Q8TF21	1146 aa		31.76	■■■□□ 2.67
CAPN1-222	ENST00000532285	LRRC37A3	O60309	1634 aa		31.75	■■■□□ 2.67
CAPN1-222	ENST00000532285	FAM208A	Q9UK61	1670 aa	Known RBP	31.74	■■■□□ 2.67
CAPN1-222	ENST00000532285	FBLN1	P23142	703 aa		31.74	■■■□□ 2.67
CAPN1-222	ENST00000532285	AMPH	P49418	695 aa		31.74	■■■□□ 2.67
CAPN1-222	ENST00000532285	C11orf95	C9JLR9	678 aa	Predicted RBP	31.73	■■■□□ 2.67
CAPN1-222	ENST00000532285	NLRP2	Q9NX02	1062 aa		31.73	■■■□□ 2.67
CAPN1-222	ENST00000532285	CGNL1	Q0VF96	1302 aa		31.73	■■■□□ 2.67
CAPN1-222	ENST00000532285	DDB1	Q16531	1140 aa		31.72	■■■□□ 2.67
CAPN1-222	ENST00000532285	HOXC9	P31274	260 aa		31.71	■■■□□ 2.67
CAPN1-222	ENST00000532285	RTL1	A6NKG5	1358 aa		31.7	■■■□□ 2.67
CAPN1-222	ENST00000532285	DISP2	A7MBM2	1401 aa		31.7	■■■□□ 2.67
CAPN1-222	ENST00000532285	TNS1	Q9HBL0	1735 aa	Known RBP	31.69	■■■□□ 2.66
CAPN1-222	ENST00000532285	RRS1	Q15050	365 aa	Known RBP	31.69	■■■□□ 2.66
CAPN1-222	ENST00000532285	DEFB132	Q7Z7B7	95 aa		31.69	■■■□□ 2.66
CAPN1-222	ENST00000532285	BAG6	P46379	1132 aa		31.68	■■■□□ 2.66
CAPN1-222	ENST00000532285	PANK3	Q9H999	370 aa		31.68	■■■□□ 2.66
CAPN1-222	ENST00000532285	ANKRD26	Q9UPS8	1709 aa		31.67	■■■□□ 2.66
CAPN1-222	ENST00000532285	LTV1	Q96GA3	475 aa	Predicted RBP	31.66	■■■□□ 2.66
CAPN1-222	ENST00000532285	PEAK1	Q9H792	1746 aa		31.66	■■■□□ 2.66
CAPN1-222	ENST00000532285	TRIM37	O94972	964 aa		31.65	■■■□□ 2.66
CAPN1-222	ENST00000532285	RGPD2	P0DJD1	1756 aa		31.64	■■■□□ 2.66
CAPN1-222	ENST00000532285	MAP2	P11137	1827 aa	Known RBP	31.64	■■■□□ 2.66
CAPN1-222	ENST00000532285	EXOC5	O00471	708 aa		31.64	■■■□□ 2.66
CAPN1-222	ENST00000532285	OVOS2	A0A0G2JMS6	1433 aa		31.64	■■■□□ 2.66
CAPN1-222	ENST00000532285	SBF2	Q86WG5	1849 aa		31.63	■■■□□ 2.65
CAPN1-222	ENST00000532285	KIF24	Q5T7B8	1368 aa		31.63	■■■□□ 2.65
CAPN1-222	ENST00000532285	KIF7	Q2M1P5	1343 aa		31.62	■■■□□ 2.65
CAPN1-222	ENST00000532285	IL2RB	P14784	551 aa		31.61	■■■□□ 2.65
CAPN1-222	ENST00000532285	FLT4	P35916	1363 aa		31.59	■■■□□ 2.65
CAPN1-222	ENST00000532285	MARCH10	Q8NA82	808 aa	Predicted RBP	31.59	■■■□□ 2.65
CAPN1-222	ENST00000532285	TNS2	Q63HR2	1409 aa		31.58	■■■□□ 2.65
CAPN1-222	ENST00000532285	SMG6	Q86US8	1419 aa	Known RBP	31.58	■■■□□ 2.65
CAPN1-222	ENST00000532285	INSR	P06213	1382 aa		31.57	■■■□□ 2.64
CAPN1-222	ENST00000532285	EN1	Q05925	392 aa	Predicted RBP	31.57	■■■□□ 2.64
CAPN1-222	ENST00000532285	NSD2	O96028	1365 aa		31.56	■■■□□ 2.64
CAPN1-222	ENST00000532285	HSP90AB2P	Q58FF8	381 aa		31.55	■■■□□ 2.64
CAPN1-222	ENST00000532285	EMILIN1	Q9Y6C2	1016 aa		31.55	■■■□□ 2.64
CAPN1-222	ENST00000532285	BCL9	O00512	1426 aa		31.55	■■■□□ 2.64
CAPN1-222	ENST00000532285	APBA3	O96018	575 aa		31.54	■■■□□ 2.64
CAPN1-222	ENST00000532285	KNSTRN	Q9Y448	316 aa		31.53	■■■□□ 2.64
CAPN1-222	ENST00000532285	PPM1G	O15355	546 aa	Predicted RBP	31.5	■■■□□ 2.63
CAPN1-222	ENST00000532285	NBPF6	Q5VWK0	638 aa		31.5	■■■□□ 2.63
CAPN1-222	ENST00000532285	NBPF4	Q96M43	638 aa		31.5	■■■□□ 2.63
CAPN1-222	ENST00000532285	CAMKK2	Q96RR4	588 aa		31.49	■■■□□ 2.63
CAPN1-222	ENST00000532285	POLK	Q9UBT6	870 aa		31.49	■■■□□ 2.63
CAPN1-222	ENST00000532285	PARD3	Q8TEW0	1356 aa		31.48	■■■□□ 2.63
CAPN1-222	ENST00000532285	TNNT2	P45379	298 aa	Predicted RBP	31.48	■■■□□ 2.63
CAPN1-222	ENST00000532285	WASHC2A	Q641Q2	1341 aa		31.48	■■■□□ 2.63
CAPN1-222	ENST00000532285	EZH2	Q15910	746 aa	Known RBP	31.47	■■■□□ 2.63
CAPN1-222	ENST00000532285	BCL11B	Q9C0K0	894 aa	Predicted RBP	31.47	■■■□□ 2.63
CAPN1-222	ENST00000532285	KAT6B	Q8WYB5	2073 aa		31.44	■■■□□ 2.62
CAPN1-222	ENST00000532285	MORC1	Q86VD1	984 aa		31.44	■■■□□ 2.62
CAPN1-222	ENST00000532285	RREB1	Q92766	1687 aa		31.44	■■■□□ 2.62
CAPN1-222	ENST00000532285	RGPD3	A6NKT7	1758 aa	Predicted RBP	31.43	■■■□□ 2.62
CAPN1-222	ENST00000532285	RGPD4	Q7Z3J3	1758 aa		31.43	■■■□□ 2.62
CAPN1-222	ENST00000532285	USHBP1	Q8N6Y0	703 aa		31.43	■■■□□ 2.62
CAPN1-222	ENST00000532285	MEGF6	O75095	1541 aa		31.41	■■■□□ 2.62
CAPN1-222	ENST00000532285	AMER1	Q5JTC6	1135 aa	Predicted RBP	31.41	■■■□□ 2.62
CAPN1-222	ENST00000532285	NHS	Q6T4R5	1651 aa		31.41	■■■□□ 2.62
CAPN1-222	ENST00000532285	SHANK3	Q9BYB0	1731 aa		31.41	■■■□□ 2.62
CAPN1-222	ENST00000532285	ZCRB1	Q8TBF4	217 aa	Known RBP	31.4	■■■□□ 2.62
CAPN1-222	ENST00000532285	RAPGEF4	Q8WZA2	1011 aa		31.4	■■■□□ 2.62
CAPN1-222	ENST00000532285	PLSCR1	O15162	318 aa		31.39	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms