RNA–Protein interactions for RNA: ENST00000530170.1

RPS3-215, Transcript of ribosomal protein S3, human

TSL 5

Gene RPS3, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPS3-215	ENST00000530170	RGPD1	P0DJD0	1748 aa		11.83	□□□□□ -0.52
RPS3-215	ENST00000530170	XRN1	Q8IZH2	1706 aa	Known RBP	11.83	□□□□□ -0.52
RPS3-215	ENST00000530170	FMN2	Q9NZ56	1722 aa		11.83	□□□□□ -0.52
RPS3-215	ENST00000530170	PLEKHG1	Q9ULL1	1385 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	FYB1	O15117	783 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	RARS	P54136	660 aa	Known RBP	11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	ZNF428	Q96B54	188 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	PLEKHF1	Q96S99	279 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	C19orf44	Q9H6X5	657 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	ADAMTS13	Q76LX8	1427 aa		11.82	□□□□□ -0.52
RPS3-215	ENST00000530170	BRINP3	Q76B58	766 aa		11.81	□□□□□ -0.52
RPS3-215	ENST00000530170	LRRC59	Q96AG4	307 aa	Known RBP	11.81	□□□□□ -0.52
RPS3-215	ENST00000530170	CLUAP1	Q96AJ1	413 aa		11.81	□□□□□ -0.52
RPS3-215	ENST00000530170	FAM161A	Q3B820	660 aa		11.8	□□□□□ -0.52
RPS3-215	ENST00000530170	CDK19	Q9BWU1	502 aa		11.8	□□□□□ -0.52
RPS3-215	ENST00000530170	USP21	Q9UK80	565 aa		11.8	□□□□□ -0.52
RPS3-215	ENST00000530170	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.8	□□□□□ -0.52
RPS3-215	ENST00000530170	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.8	□□□□□ -0.52
RPS3-215	ENST00000530170	BRPF1	P55201	1214 aa	Predicted RBP	11.79	□□□□□ -0.52
RPS3-215	ENST00000530170	PMFBP1	Q8TBY8	1022 aa		11.79	□□□□□ -0.52
RPS3-215	ENST00000530170	TRPC5	Q9UL62	973 aa	Predicted RBP	11.79	□□□□□ -0.52
RPS3-215	ENST00000530170	OVOS2	A0A0J9YW53	1432 aa		11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	OVOS2	Q6IE36	1432 aa		11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	FCHSD2	O94868	740 aa		11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	YY1	P25490	414 aa		11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	TMPO	P42166	694 aa	Known RBP	11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	MET	P08581	1390 aa		11.78	□□□□□ -0.52
RPS3-215	ENST00000530170	WASL	O00401	505 aa	Predicted RBP	11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	DIAPH1	O60610	1272 aa	Known RBP	11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	BCAR3	O75815	825 aa		11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	KIF16B	Q96L93	1317 aa		11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	PIK3R4	Q99570	1358 aa		11.77	□□□□□ -0.53
RPS3-215	ENST00000530170	CALD1	Q05682	793 aa	Known RBP	11.76	□□□□□ -0.53
RPS3-215	ENST00000530170	C8orf34	Q49A92	452 aa		11.76	□□□□□ -0.53
RPS3-215	ENST00000530170	IFFO2	Q5TF58	517 aa		11.76	□□□□□ -0.53
RPS3-215	ENST00000530170	DEFB132	Q7Z7B7	95 aa		11.76	□□□□□ -0.53
RPS3-215	ENST00000530170	STK26	Q9P289	416 aa		11.76	□□□□□ -0.53
RPS3-215	ENST00000530170	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.75	□□□□□ -0.53
RPS3-215	ENST00000530170	PSD	A5PKW4	1024 aa	Predicted RBP	11.75	□□□□□ -0.53
RPS3-215	ENST00000530170	SF3B2	Q13435	895 aa	Known RBP	11.75	□□□□□ -0.53
RPS3-215	ENST00000530170	ALDH1L2	Q3SY69	923 aa		11.75	□□□□□ -0.53
RPS3-215	ENST00000530170	USP35	Q9P2H5	1018 aa		11.75	□□□□□ -0.53
RPS3-215	ENST00000530170	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	CANX	P27824	592 aa	Known RBP	11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	ZKSCAN2	Q63HK3	967 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	DDX17	Q92841	729 aa	Known RBP	11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	GGNBP2	Q9H3C7	697 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	TRIM35	Q9UPQ4	493 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	SSH2	Q76I76	1423 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	NCOA3	Q9Y6Q9	1424 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	EP400	Q96L91	3159 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	LRRC37A3	O60309	1634 aa		11.74	□□□□□ -0.53
RPS3-215	ENST00000530170	CACNA1F	O60840	1977 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	MVP	Q14764	893 aa	Known RBP	11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	USP31	Q70CQ4	1352 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	ANKAR	Q7Z5J8	1434 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	ZNF692	Q9BU19	519 aa	Predicted RBP	11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	RSPH6A	Q9H0K4	717 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	CABP1	Q9NZU7	370 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	CCDC61	Q9Y6R9	512 aa		11.73	□□□□□ -0.53
RPS3-215	ENST00000530170	USP6	P35125	1406 aa		11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	PPM1G	O15355	546 aa	Predicted RBP	11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	PAK3	O75914	559 aa	Predicted RBP	11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	TNNT2	P45379	298 aa	Predicted RBP	11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	LMOD3	Q0VAK6	560 aa		11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	PEAK1	Q9H792	1746 aa		11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	MARF1	Q9Y4F3	1742 aa	Known RBP	11.72	□□□□□ -0.53
RPS3-215	ENST00000530170	NWD1	Q149M9	1564 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	PTPRU	Q92729	1446 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	KIF24	Q5T7B8	1368 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	HDAC1	Q13547	482 aa	Predicted RBP	11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	POLK	Q9UBT6	870 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	DDX19B	Q9UMR2	479 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	TBX22	Q9Y458	520 aa		11.71	□□□□□ -0.53
RPS3-215	ENST00000530170	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.71	□□□□□ -0.54
RPS3-215	ENST00000530170	ROBO2	Q9HCK4	1378 aa		11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	PLEKHG3	A1L390	1219 aa		11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	NEFM	P07197	916 aa		11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	NFE2L2	Q16236	605 aa		11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	CHMP4B	Q9H444	224 aa	Known RBP	11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	RRP7A	Q9Y3A4	280 aa	Known RBP	11.7	□□□□□ -0.54
RPS3-215	ENST00000530170	PIK3C2A	O00443	1686 aa		11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	IPO8	O15397	1037 aa	Known RBP	11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	DZIP1L	Q8IYY4	767 aa	Known RBP	11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	PANK1	Q8TE04	598 aa		11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	ARHGAP45	Q92619	1136 aa		11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	RWDD1	Q9H446	243 aa	Predicted RBP	11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	IFT57	Q9NWB7	429 aa		11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	COG6	Q9Y2V7	657 aa		11.69	□□□□□ -0.54
RPS3-215	ENST00000530170	TTC21A	Q8NDW8	1320 aa		11.68	□□□□□ -0.54
RPS3-215	ENST00000530170	U2SURP	O15042	1029 aa	Known RBP	11.68	□□□□□ -0.54
RPS3-215	ENST00000530170	RLBP1	P12271	317 aa		11.68	□□□□□ -0.54
RPS3-215	ENST00000530170	IL13	P35225	146 aa		11.68	□□□□□ -0.54
RPS3-215	ENST00000530170	ATF7IP	Q6VMQ6	1270 aa		11.68	□□□□□ -0.54
RPS3-215	ENST00000530170	NUDT16	Q96DE0	195 aa	Known RBP	11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms