RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NKTRP30414 1462 aaKnown RBP10.37□□□□□ -0.75
CD44-228ENST00000528455 LAMC1P11047 1609 aa10.37□□□□□ -0.75
CD44-228ENST00000528455 RBM33Q96EV2 1170 aaKnown RBP10.37□□□□□ -0.75
CD44-228ENST00000528455 XIRP1Q702N8 1843 aaKnown RBP10.37□□□□□ -0.75
CD44-228ENST00000528455 PIK3R4Q99570 1358 aa10.37□□□□□ -0.75
CD44-228ENST00000528455 ADAMTS13Q76LX8 1427 aa10.36□□□□□ -0.75
CD44-228ENST00000528455 TULP1O00294 542 aaPredicted RBP10.36□□□□□ -0.75
CD44-228ENST00000528455 OSBPP22059 807 aa10.36□□□□□ -0.75
CD44-228ENST00000528455 LMOD2Q6P5Q4 547 aa10.36□□□□□ -0.75
CD44-228ENST00000528455 MSH6P52701 1360 aa10.36□□□□□ -0.75
CD44-228ENST00000528455 ABCC11Q96J66 1382 aa10.36□□□□□ -0.75
CD44-228ENST00000528455 NWD1Q149M9 1564 aa10.35□□□□□ -0.75
CD44-228ENST00000528455 CHD2O14647 1828 aaKnown RBP10.35□□□□□ -0.75
CD44-228ENST00000528455 ST20-MTHFSA0A0A6YYL1 179 aa10.35□□□□□ -0.75
CD44-228ENST00000528455 PHF14O94880 888 aa10.35□□□□□ -0.75
CD44-228ENST00000528455 HSPA5P11021 654 aaKnown RBP10.35□□□□□ -0.75
CD44-228ENST00000528455 LHX6Q9UPM6 363 aa10.35□□□□□ -0.75
CD44-228ENST00000528455 DIP2AQ14689 1571 aa10.35□□□□□ -0.75
CD44-228ENST00000528455 NRXN3Q9Y4C0 1643 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 PRIM1P49642 420 aaKnown RBP10.34□□□□□ -0.75
CD44-228ENST00000528455 FOSBP53539 338 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 C14orf37Q86TY3 774 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 FAM163AQ96GL9 167 aaPredicted RBP10.34□□□□□ -0.75
CD44-228ENST00000528455 TRAK1Q9UPV9 953 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 PCDHGA10Q9Y5H3 936 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 METP08581 1390 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 ADGRB1O14514 1584 aa10.34□□□□□ -0.75
CD44-228ENST00000528455 FAM135BQ49AJ0 1406 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 NCOA3Q9Y6Q9 1424 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 RBM26Q5T8P6 1007 aaKnown RBP10.33□□□□□ -0.76
CD44-228ENST00000528455 LCE2DQ5TA82 110 aaPredicted RBP10.33□□□□□ -0.76
CD44-228ENST00000528455 SLAIN2Q9P270 581 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 STK26Q9P289 416 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 AMOTL2Q9Y2J4 779 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 LRPPRCP42704 1394 aaKnown RBP10.33□□□□□ -0.76
CD44-228ENST00000528455 USP47Q96K76 1375 aa10.33□□□□□ -0.76
CD44-228ENST00000528455 YTHDC2Q9H6S0 1430 aaKnown RBP10.33□□□□□ -0.76
CD44-228ENST00000528455 EIF3AQ14152 1382 aaKnown RBP10.32□□□□□ -0.76
CD44-228ENST00000528455 EPAS1Q99814 870 aa10.32□□□□□ -0.76
CD44-228ENST00000528455 C19orf44Q9H6X5 657 aa10.32□□□□□ -0.76
CD44-228ENST00000528455 SETD1AO15047 1707 aaKnown RBP10.32□□□□□ -0.76
CD44-228ENST00000528455 ATF3P18847 181 aa10.31□□□□□ -0.76
CD44-228ENST00000528455 TYW1BQ6NUM6 668 aa10.3□□□□□ -0.76
CD44-228ENST00000528455 ILDR2Q71H61 639 aa10.3□□□□□ -0.76
CD44-228ENST00000528455 ZNF454Q8N9F8 522 aa10.3□□□□□ -0.76
CD44-228ENST00000528455 PUS7Q96PZ0 661 aaKnown RBP10.3□□□□□ -0.76
CD44-228ENST00000528455 TESK2Q96S53 571 aa10.3□□□□□ -0.76
CD44-228ENST00000528455 HIRIP3Q9BW71 556 aaPredicted RBP10.3□□□□□ -0.76
CD44-228ENST00000528455 POGKQ9P215 609 aa10.3□□□□□ -0.76
CD44-228ENST00000528455 CENPJQ9HC77 1338 aaPredicted RBP10.3□□□□□ -0.76
CD44-228ENST00000528455 DLC1Q96QB1 1528 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 TMF1P82094 1093 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 CDCA8Q53HL2 280 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 TECPR2O15040 1411 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 PTPRUQ92729 1446 aa10.29□□□□□ -0.76
CD44-228ENST00000528455 SBNO2Q9Y2G9 1366 aa10.28□□□□□ -0.76
CD44-228ENST00000528455 WAPLQ7Z5K2 1190 aa10.28□□□□□ -0.76
CD44-228ENST00000528455 FBXW7Q969H0 707 aa10.28□□□□□ -0.76
CD44-228ENST00000528455 PRAM1Q96QH2 718 aa10.28□□□□□ -0.76
CD44-228ENST00000528455 ASXL1Q8IXJ9 1541 aa10.28□□□□□ -0.76
CD44-228ENST00000528455 PSDA5PKW4 1024 aaPredicted RBP10.27□□□□□ -0.77
CD44-228ENST00000528455 C11orf95C9JLR9 678 aaPredicted RBP10.27□□□□□ -0.77
CD44-228ENST00000528455 EN1Q05925 392 aaPredicted RBP10.27□□□□□ -0.77
CD44-228ENST00000528455 TPRNQ4KMQ1 711 aa10.27□□□□□ -0.77
CD44-228ENST00000528455 ZDHHC16Q969W1 377 aa10.27□□□□□ -0.77
CD44-228ENST00000528455 ROBO1Q9Y6N7 1651 aa10.27□□□□□ -0.77
CD44-228ENST00000528455 MED1Q15648 1581 aaPredicted RBP10.26□□□□□ -0.77
CD44-228ENST00000528455 EMP3P54852 163 aa10.26□□□□□ -0.77
CD44-228ENST00000528455 ADAM33Q9BZ11 813 aa10.26□□□□□ -0.77
CD44-228ENST00000528455 KNDC1Q76NI1 1749 aa10.26□□□□□ -0.77
CD44-228ENST00000528455 ARHGEF28Q8N1W1 1705 aaKnown RBP10.25□□□□□ -0.77
CD44-228ENST00000528455 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.25□□□□□ -0.77
CD44-228ENST00000528455 SOCS7O14512 581 aa10.25□□□□□ -0.77
CD44-228ENST00000528455 PPP4R3BQ5MIZ7 849 aa10.25□□□□□ -0.77
CD44-228ENST00000528455 ERBB3P21860 1342 aa10.25□□□□□ -0.77
CD44-228ENST00000528455 EVC2Q86UK5 1308 aa10.25□□□□□ -0.77
CD44-228ENST00000528455 ROBO2Q9HCK4 1378 aa10.25□□□□□ -0.77
CD44-228ENST00000528455 XRN1Q8IZH2 1706 aaKnown RBP10.24□□□□□ -0.77
CD44-228ENST00000528455 PRKCSHP14314 528 aaPredicted RBP10.24□□□□□ -0.77
CD44-228ENST00000528455 GPIHBP1Q8IV16 184 aa10.24□□□□□ -0.77
CD44-228ENST00000528455 ZC3H15Q8WU90 426 aaKnown RBP10.24□□□□□ -0.77
CD44-228ENST00000528455 DCCP43146 1447 aa10.24□□□□□ -0.77
CD44-228ENST00000528455 NUTM2FA1L443 756 aa10.23□□□□□ -0.77
CD44-228ENST00000528455 MAP3K7O43318 606 aa10.23□□□□□ -0.77
CD44-228ENST00000528455 SAFB2Q14151 953 aaKnown RBP eCLIP10.23□□□□□ -0.77
CD44-228ENST00000528455 CDK19Q9BWU1 502 aa10.23□□□□□ -0.77
CD44-228ENST00000528455 WASHC2AQ641Q2 1341 aa10.23□□□□□ -0.77
CD44-228ENST00000528455 PTCH1Q13635 1447 aa10.23□□□□□ -0.77
CD44-228ENST00000528455 PHLPP1O60346 1717 aa10.22□□□□□ -0.77
CD44-228ENST00000528455 WASLO00401 505 aaPredicted RBP10.22□□□□□ -0.77
CD44-228ENST00000528455 GPR37O15354 613 aa10.22□□□□□ -0.77
CD44-228ENST00000528455 TSR1Q2NL82 804 aaKnown RBP10.22□□□□□ -0.77
CD44-228ENST00000528455 VARS2Q5ST30 1063 aaKnown RBP10.22□□□□□ -0.77
CD44-228ENST00000528455 BRINP3Q76B58 766 aa10.22□□□□□ -0.77
CD44-228ENST00000528455 MINK1Q8N4C8 1332 aaPredicted RBP10.22□□□□□ -0.77
CD44-228ENST00000528455 CCDC7Q96M83 1385 aa10.22□□□□□ -0.77
CD44-228ENST00000528455 POTEB3A0JP26 581 aa10.21□□□□□ -0.77
CD44-228ENST00000528455 FAM205CA6NFA0 338 aa10.21□□□□□ -0.77
CD44-228ENST00000528455 C6orf132Q5T0Z8 1188 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms