RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 NUTM2BA6NNL0 878 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 NUTM2EB1AL46 878 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 RGPD8O14715 1765 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 APPP05067 770 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 RXRBP28702 533 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 UTP14CQ5TAP6 766 aaKnown RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 TMEM132EQ6IEE7 984 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 CCDC125Q86Z20 511 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 NUTM2AQ8IVF1 878 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 ZNF830Q96NB3 372 aaPredicted RBP9.69□□□□□ -0.86
HDAC3-216ENST00000523088 ORAI2Q96SN7 254 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 TMEM51Q9NW97 253 aa9.69□□□□□ -0.86
HDAC3-216ENST00000523088 ARHGEF28Q8N1W1 1705 aaKnown RBP9.68□□□□□ -0.86
HDAC3-216ENST00000523088 AFF2P51816 1311 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 WASHC2AQ641Q2 1341 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 PSME1Q06323 249 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 CFAP70Q5T0N1 1121 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 WAPLQ7Z5K2 1190 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 NGLY1Q96IV0 654 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 POGKQ9P215 609 aa9.68□□□□□ -0.86
HDAC3-216ENST00000523088 ARHGEF10O15013 1369 aa9.67□□□□□ -0.86
HDAC3-216ENST00000523088 PLEKHH1Q9ULM0 1364 aa9.67□□□□□ -0.86
HDAC3-216ENST00000523088 E9PSI1 815 aa9.67□□□□□ -0.86
HDAC3-216ENST00000523088 SMAP1Q8IYB5 467 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-216ENST00000523088 DCAF11Q8TEB1 546 aa9.67□□□□□ -0.86
HDAC3-216ENST00000523088 C8orf37Q96NL8 207 aa9.67□□□□□ -0.86
HDAC3-216ENST00000523088 TULP4Q9NRJ4 1543 aa9.66□□□□□ -0.86
HDAC3-216ENST00000523088 SBNO1A3KN83 1393 aa9.66□□□□□ -0.86
HDAC3-216ENST00000523088 RBM6P78332 1123 aaKnown RBP9.66□□□□□ -0.86
HDAC3-216ENST00000523088 TSHZ1Q6ZSZ6 1077 aa9.66□□□□□ -0.86
HDAC3-216ENST00000523088 PRAM1Q96QH2 718 aa9.66□□□□□ -0.86
HDAC3-216ENST00000523088 CARD10Q9BWT7 1032 aa9.66□□□□□ -0.86
HDAC3-216ENST00000523088 TNS3Q68CZ2 1445 aa9.65□□□□□ -0.86
HDAC3-216ENST00000523088 NWD2Q9ULI1 1742 aa9.65□□□□□ -0.86
HDAC3-216ENST00000523088 USP32Q8NFA0 1604 aa9.65□□□□□ -0.86
HDAC3-216ENST00000523088 TCERG1O14776 1098 aaKnown RBP9.65□□□□□ -0.86
HDAC3-216ENST00000523088 FOXO3O43524 673 aa9.65□□□□□ -0.86
HDAC3-216ENST00000523088 SLC20A2Q08357 652 aa9.65□□□□□ -0.86
HDAC3-216ENST00000523088 DDX17Q92841 729 aaKnown RBP9.65□□□□□ -0.86
HDAC3-216ENST00000523088 TRPC5Q9UL62 973 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-216ENST00000523088 SPATA31A3Q5VYP0 1347 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 LOC102724159A0A0B4J2E5 919 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 NRDCO43847 1150 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 PWP2Q15269 919 aaKnown RBP9.64□□□□□ -0.87
HDAC3-216ENST00000523088 CC2D1BQ5T0F9 858 aaKnown RBP9.64□□□□□ -0.87
HDAC3-216ENST00000523088 SPTY2D1Q68D10 685 aaPredicted RBP9.64□□□□□ -0.87
HDAC3-216ENST00000523088 FNBP4Q8N3X1 1017 aaPredicted RBP9.64□□□□□ -0.87
HDAC3-216ENST00000523088 YY1AP1Q9H869 796 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.64□□□□□ -0.876e-10■■■■■ 98.2
HDAC3-216ENST00000523088 PHF8Q9UPP1 1060 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 ABCA3Q99758 1704 aa9.64□□□□□ -0.87
HDAC3-216ENST00000523088 GPRASP1Q5JY77 1395 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 KDM4AO75164 1064 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 ADAMTS2O95450 1211 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 NBPF9Q3BBW0 867 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 C1orf115Q9H7X2 142 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 USP21Q9UK80 565 aa9.63□□□□□ -0.87
HDAC3-216ENST00000523088 TRPM3Q9HCF6 1732 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-216ENST00000523088 CALRP27797 417 aaKnown RBP9.62□□□□□ -0.87
HDAC3-216ENST00000523088 RGS3P49796 1198 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 SETDB1Q15047 1291 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 HSP90AB3PQ58FF7 597 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 KRT28Q7Z3Y7 464 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 EGFL6Q8IUX8 553 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.62□□□□□ -0.87
HDAC3-216ENST00000523088 MAP7D2Q96T17 732 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 QTRT2Q9H974 415 aaKnown RBP9.62□□□□□ -0.87
HDAC3-216ENST00000523088 TRAK1Q9UPV9 953 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 RIPOR2Q9Y4F9 1068 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 ATRNO75882 1429 aa9.62□□□□□ -0.87
HDAC3-216ENST00000523088 ALS2Q96Q42 1657 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 ATP7BP35670 1465 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 NUTM2FA1L443 756 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 WASLO00401 505 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-216ENST00000523088 BRPF1P55201 1214 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-216ENST00000523088 MKL1Q969V6 931 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 ZNF428Q96B54 188 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 SH3BP1Q9Y3L3 701 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 RGS12O14924 1447 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 ATAD2Q6PL18 1390 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 PLCH1Q4KWH8 1693 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 TOPAZ1Q8N9V7 1692 aa9.61□□□□□ -0.87
HDAC3-216ENST00000523088 SAFB2Q14151 953 aaKnown RBP eCLIP9.6□□□□□ -0.87
HDAC3-216ENST00000523088 TMCO4Q5TGY1 634 aa9.6□□□□□ -0.87
HDAC3-216ENST00000523088 SLIT2O94813 1529 aa9.6□□□□□ -0.87
HDAC3-216ENST00000523088 QRICH2Q9H0J4 1663 aa9.59□□□□□ -0.87
HDAC3-216ENST00000523088 RALBP1Q15311 655 aa9.59□□□□□ -0.87
HDAC3-216ENST00000523088 FOXD4L5Q5VV16 416 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-216ENST00000523088 RINLQ6ZS11 566 aa9.59□□□□□ -0.87
HDAC3-216ENST00000523088 OTUD6BQ8N6M0 293 aa9.59□□□□□ -0.87
HDAC3-216ENST00000523088 FOXD4L4Q8WXT5 416 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-216ENST00000523088 COL14A1Q05707 1796 aaKnown RBP9.59□□□□□ -0.87
HDAC3-216ENST00000523088 BCL9LQ86UU0 1499 aa9.59□□□□□ -0.87
HDAC3-216ENST00000523088 MINK1Q8N4C8 1332 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-216ENST00000523088 XPCQ01831 940 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-216ENST00000523088 BSDC1Q9NW68 430 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-216ENST00000523088 GEMIN8Q9NWZ8 242 aaKnown RBP9.58□□□□□ -0.88
HDAC3-216ENST00000523088 BRD4O60885 1362 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-216ENST00000523088 TRPM1Q7Z4N2 1603 aa9.57□□□□□ -0.88
HDAC3-216ENST00000523088 CRYBG1Q9Y4K1 1723 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms