RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 EVA1CP58658 441 aa30.3■■■□□ 2.44
VEGFA-217ENST00000518538 SPATA31A5Q5VU36 1347 aa30.29■■■□□ 2.44
VEGFA-217ENST00000518538 WASHC2AQ641Q2 1341 aa30.29■■■□□ 2.44
VEGFA-217ENST00000518538 SPATA31A7Q8IWB4 1347 aa30.29■■■□□ 2.44
VEGFA-217ENST00000518538 SOCS7O14512 581 aa30.27■■■□□ 2.44
VEGFA-217ENST00000518538 AXIN2Q9Y2T1 843 aa30.27■■■□□ 2.44
VEGFA-217ENST00000518538 LTN1O94822 1766 aa30.26■■■□□ 2.44
VEGFA-217ENST00000518538 SPATA31A1Q5TZJ5 1347 aa30.24■■■□□ 2.43
VEGFA-217ENST00000518538 LARP1Q6PKG0 1096 aaKnown RBP30.24■■■□□ 2.43
VEGFA-217ENST00000518538 ONECUT3O60422 494 aaPredicted RBP30.22■■■□□ 2.43
VEGFA-217ENST00000518538 CRB1P82279 1406 aa30.21■■■□□ 2.43
VEGFA-217ENST00000518538 MAP3K19Q56UN5 1328 aa30.21■■■□□ 2.43
VEGFA-217ENST00000518538 NSD2O96028 1365 aa30.2■■■□□ 2.43
VEGFA-217ENST00000518538 KNSTRNQ9Y448 316 aa30.2■■■□□ 2.43
VEGFA-217ENST00000518538 RGPD5Q99666 1765 aa30.2■■■□□ 2.42
VEGFA-217ENST00000518538 WDR17Q8IZU2 1322 aa30.2■■■□□ 2.42
VEGFA-217ENST00000518538 FBLN1P23142 703 aa30.19■■■□□ 2.42
VEGFA-217ENST00000518538 FAM98CQ17RN3 349 aaKnown RBP30.19■■■□□ 2.42
VEGFA-217ENST00000518538 ANKRD26Q9UPS8 1709 aa30.19■■■□□ 2.42
VEGFA-217ENST00000518538 SEPT12Q8IYM1 358 aa30.18■■■□□ 2.42
VEGFA-217ENST00000518538 IP6K1Q92551 441 aa30.18■■■□□ 2.42
VEGFA-217ENST00000518538 BLMP54132 1417 aaPredicted RBP30.18■■■□□ 2.42
VEGFA-217ENST00000518538 TCP11L2Q8N4U5 519 aa30.16■■■□□ 2.42
VEGFA-217ENST00000518538 USP35Q9P2H5 1018 aa30.16■■■□□ 2.42
VEGFA-217ENST00000518538 RTL1A6NKG5 1358 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 CSB-PGBD3P0DP91 1061 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 AMPHP49418 695 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 RRS1Q15050 365 aaKnown RBP30.15■■■□□ 2.42
VEGFA-217ENST00000518538 BARGINQ6ZT62 677 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 TOM1L2Q6ZVM7 507 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 THRAP3Q9Y2W1 955 aaKnown RBP30.15■■■□□ 2.42
VEGFA-217ENST00000518538 ERBB3P21860 1342 aa30.15■■■□□ 2.42
VEGFA-217ENST00000518538 THSD7AQ9UPZ6 1657 aa30.14■■■□□ 2.42
VEGFA-217ENST00000518538 A0A0G2JS52 829 aa30.13■■■□□ 2.41
VEGFA-217ENST00000518538 HOXC9P31274 260 aa30.13■■■□□ 2.41
VEGFA-217ENST00000518538 MYT1Q01538 1121 aa30.13■■■□□ 2.41
VEGFA-217ENST00000518538 PER1O15534 1290 aaPredicted RBP30.12■■■□□ 2.41
VEGFA-217ENST00000518538 KIF24Q5T7B8 1368 aa30.12■■■□□ 2.41
VEGFA-217ENST00000518538 AMER1Q5JTC6 1135 aaPredicted RBP30.11■■■□□ 2.41
VEGFA-217ENST00000518538 ANKRD24Q8TF21 1146 aa30.11■■■□□ 2.41
VEGFA-217ENST00000518538 CARD10Q9BWT7 1032 aa30.1■■■□□ 2.41
VEGFA-217ENST00000518538 BRWD3Q6RI45 1802 aa30.08■■■□□ 2.41
VEGFA-217ENST00000518538 FLT4P35916 1363 aa30.08■■■□□ 2.41
VEGFA-217ENST00000518538 PEAK1Q9H792 1746 aa30.07■■■□□ 2.4
VEGFA-217ENST00000518538 MORC1Q86VD1 984 aa30.06■■■□□ 2.4
VEGFA-217ENST00000518538 EMILIN1Q9Y6C2 1016 aa30.06■■■□□ 2.4
VEGFA-217ENST00000518538 FAM208AQ9UK61 1670 aaKnown RBP30.04■■■□□ 2.4
VEGFA-217ENST00000518538 TNNT2P45379 298 aaPredicted RBP30.04■■■□□ 2.4
VEGFA-217ENST00000518538 KRT27Q7Z3Y8 459 aa30.04■■■□□ 2.4
VEGFA-217ENST00000518538 NLRP2Q9NX02 1062 aa30.04■■■□□ 2.4
VEGFA-217ENST00000518538 LTV1Q96GA3 475 aaPredicted RBP30.03■■■□□ 2.4
VEGFA-217ENST00000518538 POLKQ9UBT6 870 aa30.03■■■□□ 2.4
VEGFA-217ENST00000518538 INSRP06213 1382 aa30.03■■■□□ 2.4
VEGFA-217ENST00000518538 NPC1L1Q9UHC9 1359 aa30.03■■■□□ 2.4
VEGFA-217ENST00000518538 MAP2P11137 1827 aaKnown RBP30.01■■■□□ 2.4
VEGFA-217ENST00000518538 WNK3Q9BYP7 1800 aa30.01■■■□□ 2.39
VEGFA-217ENST00000518538 PARP4Q9UKK3 1724 aaKnown RBP30■■■□□ 2.39
VEGFA-217ENST00000518538 SMG6Q86US8 1419 aaKnown RBP30■■■□□ 2.39
VEGFA-217ENST00000518538 PPM1GO15355 546 aaPredicted RBP30■■■□□ 2.39
VEGFA-217ENST00000518538 HSP90AB2PQ58FF8 381 aa30■■■□□ 2.39
VEGFA-217ENST00000518538 CDCA7Q9BWT1 371 aaPredicted RBP30■■■□□ 2.39
VEGFA-217ENST00000518538 DISP2A7MBM2 1401 aa29.99■■■□□ 2.39
VEGFA-217ENST00000518538 CC2D1BQ5T0F9 858 aaKnown RBP29.98■■■□□ 2.39
VEGFA-217ENST00000518538 UPF1Q92900 1129 aaKnown RBP eCLIP29.98■■■□□ 2.39
VEGFA-217ENST00000518538 LRRC37A3O60309 1634 aa29.95■■■□□ 2.38
VEGFA-217ENST00000518538 PDE3BQ13370 1112 aa29.94■■■□□ 2.38
VEGFA-217ENST00000518538 DDB1Q16531 1140 aa29.92■■■□□ 2.38
VEGFA-217ENST00000518538 IL2RBP14784 551 aa29.91■■■□□ 2.38
VEGFA-217ENST00000518538 RGPD2P0DJD1 1756 aa29.9■■■□□ 2.38
VEGFA-217ENST00000518538 NBPF6Q5VWK0 638 aa29.9■■■□□ 2.38
VEGFA-217ENST00000518538 NBPF4Q96M43 638 aa29.9■■■□□ 2.38
VEGFA-217ENST00000518538 FAM182BQ5T319 152 aa29.88■■■□□ 2.37
VEGFA-217ENST00000518538 TNS2Q63HR2 1409 aa29.87■■■□□ 2.37
VEGFA-217ENST00000518538 CNGB1Q14028 1251 aaPredicted RBP29.86■■■□□ 2.37
VEGFA-217ENST00000518538 EXOC5O00471 708 aa29.85■■■□□ 2.37
VEGFA-217ENST00000518538 FAM196AQ6ZSG2 479 aa29.85■■■□□ 2.37
VEGFA-217ENST00000518538 CCDC125Q86Z20 511 aa29.85■■■□□ 2.37
VEGFA-217ENST00000518538 EIF4A2Q14240 407 aaKnown RBP29.84■■■□□ 2.37
VEGFA-217ENST00000518538 USHBP1Q8N6Y0 703 aa29.84■■■□□ 2.37
VEGFA-217ENST00000518538 EP400Q96L91 3159 aa29.83■■■□□ 2.37
VEGFA-217ENST00000518538 NCAPD2Q15021 1401 aa29.83■■■□□ 2.37
VEGFA-217ENST00000518538 MTHFSP49914 203 aa29.82■■■□□ 2.36
VEGFA-217ENST00000518538 OVOS2A0A0G2JMS6 1433 aa29.81■■■□□ 2.36
VEGFA-217ENST00000518538 DDX10Q13206 875 aaKnown RBP29.81■■■□□ 2.36
VEGFA-217ENST00000518538 MEGF6O75095 1541 aa29.81■■■□□ 2.36
VEGFA-217ENST00000518538 EYA1Q99502 592 aa29.8■■■□□ 2.36
VEGFA-217ENST00000518538 MARCH10Q8NA82 808 aaPredicted RBP29.79■■■□□ 2.36
VEGFA-217ENST00000518538 RAPGEF4Q8WZA2 1011 aa29.78■■■□□ 2.36
VEGFA-217ENST00000518538 BCL9O00512 1426 aa29.76■■■□□ 2.35
VEGFA-217ENST00000518538 SF3B2Q13435 895 aaKnown RBP29.75■■■□□ 2.35
VEGFA-217ENST00000518538 IGSF1Q8N6C5 1336 aa29.74■■■□□ 2.35
VEGFA-217ENST00000518538 RGPD1P0DJD0 1748 aa29.74■■■□□ 2.35
VEGFA-217ENST00000518538 TATP17735 454 aaPredicted RBP29.74■■■□□ 2.35
VEGFA-217ENST00000518538 TRIM37O94972 964 aa29.72■■■□□ 2.35
VEGFA-217ENST00000518538 IL13P35225 146 aa29.72■■■□□ 2.35
VEGFA-217ENST00000518538 ZCRB1Q8TBF4 217 aaKnown RBP29.72■■■□□ 2.35
VEGFA-217ENST00000518538 PARD3Q8TEW0 1356 aa29.7■■■□□ 2.35
VEGFA-217ENST00000518538 ZNF316A6NFI3 1004 aaPredicted RBP29.7■■■□□ 2.35
VEGFA-217ENST00000518538 TNS1Q9HBL0 1735 aaKnown RBP29.69■■■□□ 2.34
VEGFA-217ENST00000518538 PPP2R1AP30153 589 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms