RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 ARHGAP27Q6ZUM4 889 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 RPGRQ92834 1020 aaKnown RBP3.76□□□□□ -1.81
NEDD4-208ENST00000508342 ST20-MTHFSA0A0A6YYL1 179 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 MTHFSP49914 203 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 ATP6V1AP38606 617 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 FGD1P98174 961 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 CFAP70Q5T0N1 1121 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 FAM196AQ6ZSG2 479 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 CABP1Q9NZU7 370 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 ZNF652Q9Y2D9 606 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 HFM1A2PYH4 1435 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 SENP3-EIF4A1A0A087X0R7 540 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 RBM5P52756 815 aaKnown RBP eCLIP3.76□□□□□ -1.81
NEDD4-208ENST00000508342 TCP11L2Q8N4U5 519 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 QRICH2Q9H0J4 1663 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 EN1Q05925 392 aaPredicted RBP3.76□□□□□ -1.81
NEDD4-208ENST00000508342 MSL1Q68DK7 614 aa3.76□□□□□ -1.81
NEDD4-208ENST00000508342 KDM5AP29375 1690 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 WASLO00401 505 aaPredicted RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 SEPT12Q8IYM1 358 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 NCOA1Q15788 1441 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 AGLP35573 1532 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 E9PCH4 1651 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 PATL2C9JE40 543 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 SOCS7O14512 581 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 CALD1Q05682 793 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 FAM9BQ8IZU0 186 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 BCL2L13Q9BXK5 485 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 CCDC87Q9NVE4 849 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 EIF2S2P20042 333 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 PDE4CQ08493 712 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 EAPPQ56P03 285 aaPredicted RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 TCERG1O14776 1098 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 WDHD1O75717 1129 aaPredicted RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 R3HDM1Q15032 1099 aaKnown RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 CDCA7Q9BWT1 371 aaPredicted RBP3.75□□□□□ -1.81
NEDD4-208ENST00000508342 KIF1AQ12756 1690 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 GORABQ5T7V8 394 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 ANKRD24Q8TF21 1146 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 USP47Q96K76 1375 aa3.75□□□□□ -1.81
NEDD4-208ENST00000508342 STARD3NLO95772 234 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 U2AF1L5P0DN76 240 aaPredicted RBP3.74□□□□□ -1.81
NEDD4-208ENST00000508342 U2AF1Q01081 240 aaKnown RBP eCLIP3.74□□□□□ -1.81
NEDD4-208ENST00000508342 CC2D2BQ6DHV5 1058 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 USHBP1Q8N6Y0 703 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 IQGAP3Q86VI3 1631 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 LAMC1P11047 1609 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 NECTIN2Q92692 538 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 NAIPQ13075 1403 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 FCHSD2O94868 740 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 LMOD3Q0VAK6 560 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 MAP3K1Q13233 1512 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 A0A087WZG4 1122 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 LTKP29376 864 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 GIGYF1O75420 1035 aaPredicted RBP3.74□□□□□ -1.81
NEDD4-208ENST00000508342 IL2RBP14784 551 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 ZCRB1Q8TBF4 217 aaKnown RBP3.74□□□□□ -1.81
NEDD4-208ENST00000508342 STAC3Q96MF2 364 aa3.74□□□□□ -1.81
NEDD4-208ENST00000508342 CCNL1Q9UK58 526 aaPredicted RBP3.74□□□□□ -1.81
NEDD4-208ENST00000508342 GJD4Q96KN9 370 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 ORAI2Q96SN7 254 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 NAP1L2Q9ULW6 460 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 ACEP12821 1306 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 SMARCC1Q92922 1105 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 RTCBQ9Y3I0 505 aaKnown RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 GJA3Q9Y6H8 435 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 RAD21O60216 631 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 NCLP19338 710 aaKnown RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 STK31Q9BXU1 1019 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 CHMP4AQ9BY43 222 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 TBX22Q9Y458 520 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 ADGRB2O60241 1585 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 TRAPPC3LQ5T215 181 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 CCDC125Q86Z20 511 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 RNF216Q9NWF9 866 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 MED1Q15648 1581 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 FTSJ3Q8IY81 847 aaKnown RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 SPON1Q9HCB6 807 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 HMOX1P09601 288 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 AIMP1Q12904 312 aaKnown RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 RRS1Q15050 365 aaKnown RBP3.73□□□□□ -1.81
NEDD4-208ENST00000508342 AMOTL1Q8IY63 956 aa3.73□□□□□ -1.81
NEDD4-208ENST00000508342 BCS1LQ9Y276 419 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 CLTCL1P53675 1640 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 TCOF1Q13428 1488 aaKnown RBP3.72□□□□□ -1.81
NEDD4-208ENST00000508342 BTBD11A6QL63 1104 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 HOXD11P31277 338 aaPredicted RBP3.72□□□□□ -1.81
NEDD4-208ENST00000508342 RIC3Q7Z5B4 369 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 HRCP23327 699 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 ANP32AP39687 249 aaKnown RBP3.72□□□□□ -1.81
NEDD4-208ENST00000508342 CASC1Q6TDU7 716 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 KCTD17Q8N5Z5 321 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 ANP32EQ9BTT0 268 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 GGNBP2Q9H3C7 697 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 DIAPH1O60610 1272 aaKnown RBP3.72□□□□□ -1.81
NEDD4-208ENST00000508342 ADGRL3Q9HAR2 1447 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 MYL6BP14649 208 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 FAM182BQ5T319 152 aa3.72□□□□□ -1.81
NEDD4-208ENST00000508342 DPY19L2Q6NUT2 758 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms