RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RWDD1Q9H446 243 aaPredicted RBP15.32■□□□□ 0.04
NUP54-202ENST00000502850 SMC4Q9NTJ3 1288 aa15.32■□□□□ 0.04
NUP54-202ENST00000502850 IPO8O15397 1037 aaKnown RBP15.31■□□□□ 0.04
NUP54-202ENST00000502850 EXOSC9Q06265 439 aaKnown RBP15.31■□□□□ 0.04
NUP54-202ENST00000502850 NFE2L2Q16236 605 aa15.31■□□□□ 0.04
NUP54-202ENST00000502850 PROSER2Q86WR7 435 aaPredicted RBP15.31■□□□□ 0.04
NUP54-202ENST00000502850 ROBO2Q9HCK4 1378 aa15.31■□□□□ 0.04
NUP54-202ENST00000502850 PRKAR2BP31323 418 aa15.3■□□□□ 0.04
NUP54-202ENST00000502850 NME9Q86XW9 330 aa15.29■□□□□ 0.04
NUP54-202ENST00000502850 TSR2Q969E8 191 aaKnown RBP15.29■□□□□ 0.04
NUP54-202ENST00000502850 DDX19BQ9UMR2 479 aa15.29■□□□□ 0.04
NUP54-202ENST00000502850 TMEM94Q12767 1356 aa15.29■□□□□ 0.04
NUP54-202ENST00000502850 PPM1GO15355 546 aaPredicted RBP15.28■□□□□ 0.04
NUP54-202ENST00000502850 PAK3O75914 559 aaPredicted RBP15.28■□□□□ 0.04
NUP54-202ENST00000502850 IGHDP01880 384 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 IL13P35225 146 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 RGS3P49796 1198 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 C8orf34Q49A92 452 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 ILDR2Q71H61 639 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 CHMP4BQ9H444 224 aaKnown RBP15.28■□□□□ 0.04
NUP54-202ENST00000502850 CHD2O14647 1828 aaKnown RBP15.28■□□□□ 0.04
NUP54-202ENST00000502850 PLEKHG3A1L390 1219 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 BRPF1P55201 1214 aaPredicted RBP15.28■□□□□ 0.04
NUP54-202ENST00000502850 ATF7IPQ6VMQ6 1270 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 TBX22Q9Y458 520 aa15.28■□□□□ 0.04
NUP54-202ENST00000502850 DLG5Q8TDM6 1919 aa15.27■□□□□ 0.04
NUP54-202ENST00000502850 OVOS2A0A0J9YW53 1432 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 USP6P35125 1406 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 OVOS2Q6IE36 1432 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 GNAI1P63096 354 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 BCL2L13Q9BXK5 485 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 IFT57Q9NWB7 429 aa15.27■□□□□ 0.03
NUP54-202ENST00000502850 XRN1Q8IZH2 1706 aaKnown RBP15.26■□□□□ 0.03
NUP54-202ENST00000502850 NWD1Q149M9 1564 aa15.26■□□□□ 0.03
NUP54-202ENST00000502850 RLBP1P12271 317 aa15.26■□□□□ 0.03
NUP54-202ENST00000502850 RBM33Q96EV2 1170 aaKnown RBP15.26■□□□□ 0.03
NUP54-202ENST00000502850 PRR36Q9H6K5 1346 aa15.26■□□□□ 0.03
NUP54-202ENST00000502850 SSH1Q8WYL5 1049 aa15.25■□□□□ 0.03
NUP54-202ENST00000502850 DAXXQ9UER7 740 aaPredicted RBP15.25■□□□□ 0.03
NUP54-202ENST00000502850 EMILIN1Q9Y6C2 1016 aa15.25■□□□□ 0.03
NUP54-202ENST00000502850 TTC21AQ8NDW8 1320 aa15.25■□□□□ 0.03
NUP54-202ENST00000502850 FMN2Q9NZ56 1722 aa15.25■□□□□ 0.03
NUP54-202ENST00000502850 RTL5Q5HYW3 569 aaPredicted RBP15.25■□□□□ 0.03
NUP54-202ENST00000502850 SKAP1Q86WV1 359 aa15.25■□□□□ 0.03
NUP54-202ENST00000502850 TTC21BQ7Z4L5 1316 aa15.24■□□□□ 0.03
NUP54-202ENST00000502850 TRIM27P14373 513 aa15.24■□□□□ 0.03
NUP54-202ENST00000502850 HAP1P54257 671 aaPredicted RBP15.24■□□□□ 0.03
NUP54-202ENST00000502850 PIK3R4Q99570 1358 aa15.23■□□□□ 0.03
NUP54-202ENST00000502850 HDAC1Q13547 482 aaPredicted RBP15.23■□□□□ 0.03
NUP54-202ENST00000502850 RGPD1P0DJD0 1748 aa15.23■□□□□ 0.03
NUP54-202ENST00000502850 USP31Q70CQ4 1352 aa15.23■□□□□ 0.03
NUP54-202ENST00000502850 ANKARQ7Z5J8 1434 aa15.23■□□□□ 0.03
NUP54-202ENST00000502850 ARHGAP45Q92619 1136 aa15.22■□□□□ 0.03
NUP54-202ENST00000502850 PCDHB15Q9Y5E8 787 aa15.22■□□□□ 0.03
NUP54-202ENST00000502850 ACEP12821 1306 aa15.22■□□□□ 0.03
NUP54-202ENST00000502850 PTPRUQ92729 1446 aa15.22■□□□□ 0.03
NUP54-202ENST00000502850 HMOX1P09601 288 aa15.21■□□□□ 0.03
NUP54-202ENST00000502850 ITPRIPQ8IWB1 547 aa15.21■□□□□ 0.03
NUP54-202ENST00000502850 NOB1Q9ULX3 412 aaKnown RBP15.21■□□□□ 0.03
NUP54-202ENST00000502850 USP54Q70EL1 1684 aa15.21■□□□□ 0.03
NUP54-202ENST00000502850 MSH6P52701 1360 aa15.21■□□□□ 0.02
NUP54-202ENST00000502850 MED1Q15648 1581 aaPredicted RBP15.21■□□□□ 0.02
NUP54-202ENST00000502850 SSH2Q76I76 1423 aa15.21■□□□□ 0.02
NUP54-202ENST00000502850 USP35Q9P2H5 1018 aa15.21■□□□□ 0.02
NUP54-202ENST00000502850 UPF2Q9HAU5 1272 aaKnown RBP15.2■□□□□ 0.02
NUP54-202ENST00000502850 ZNF853P0CG23 659 aa15.19■□□□□ 0.02
NUP54-202ENST00000502850 PHACTR3Q96KR7 559 aa15.19■□□□□ 0.02
NUP54-202ENST00000502850 CFAP44Q96MT7 982 aa15.19■□□□□ 0.02
NUP54-202ENST00000502850 TNNQ9UQP3 1299 aa15.19■□□□□ 0.02
NUP54-202ENST00000502850 AMOTL2Q9Y2J4 779 aa15.19■□□□□ 0.02
NUP54-202ENST00000502850 ARHGEF10O15013 1369 aa15.18■□□□□ 0.02
NUP54-202ENST00000502850 PEAK1Q9H792 1746 aa15.18■□□□□ 0.02
NUP54-202ENST00000502850 RRS1Q15050 365 aaKnown RBP15.18■□□□□ 0.02
NUP54-202ENST00000502850 ZRANB1Q9UGI0 708 aa15.18■□□□□ 0.02
NUP54-202ENST00000502850 PDZRN3Q9UPQ7 1066 aa15.18■□□□□ 0.02
NUP54-202ENST00000502850 SOCS7O14512 581 aa15.17■□□□□ 0.02
NUP54-202ENST00000502850 SLAIN2Q9P270 581 aa15.17■□□□□ 0.02
NUP54-202ENST00000502850 NCOA3Q9Y6Q9 1424 aa15.17■□□□□ 0.02
NUP54-202ENST00000502850 ROBO1Q9Y6N7 1651 aa15.17■□□□□ 0.02
NUP54-202ENST00000502850 KIF24Q5T7B8 1368 aa15.17■□□□□ 0.02
NUP54-202ENST00000502850 LAS1LQ9Y4W2 734 aaKnown RBP15.17■□□□□ 0.02
NUP54-202ENST00000502850 SBNO1A3KN83 1393 aa15.16■□□□□ 0.02
NUP54-202ENST00000502850 FBLN1P23142 703 aa15.16■□□□□ 0.02
NUP54-202ENST00000502850 C14orf37Q86TY3 774 aa15.16■□□□□ 0.02
NUP54-202ENST00000502850 TMEM57Q8N5G2 664 aa15.16■□□□□ 0.02
NUP54-202ENST00000502850 ZBTB40Q9NUA8 1239 aa15.16■□□□□ 0.02
NUP54-202ENST00000502850 FLT4P35916 1363 aa15.15■□□□□ 0.02
NUP54-202ENST00000502850 PIK3C2AO00443 1686 aa15.15■□□□□ 0.02
NUP54-202ENST00000502850 VAMP4O75379 141 aa15.15■□□□□ 0.02
NUP54-202ENST00000502850 EIF4A2Q14240 407 aaKnown RBP15.15■□□□□ 0.02
NUP54-202ENST00000502850 NBR1Q14596 966 aa15.15■□□□□ 0.02
NUP54-202ENST00000502850 API5Q9BZZ5 524 aaKnown RBP15.15■□□□□ 0.02
NUP54-202ENST00000502850 RGPD8O14715 1765 aaPredicted RBP15.14■□□□□ 0.01
NUP54-202ENST00000502850 SMC5Q8IY18 1101 aa15.14■□□□□ 0.01
NUP54-202ENST00000502850 MRPL50Q8N5N7 158 aaKnown RBP15.14■□□□□ 0.01
NUP54-202ENST00000502850 MBIPQ9NS73 344 aa15.14■□□□□ 0.01
NUP54-202ENST00000502850 BECN1Q14457 450 aa15.14■□□□□ 0.01
NUP54-202ENST00000502850 TWISTNBQ3B726 338 aaPredicted RBP15.14■□□□□ 0.01
NUP54-202ENST00000502850 C19orf44Q9H6X5 657 aa15.14■□□□□ 0.01
NUP54-202ENST00000502850 KIAA0232Q92628 1395 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms