RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NUTM1Q86Y26 1132 aa16.59■□□□□ 0.25
GPC1-209ENST00000495100 GDPD2Q9HCC8 539 aa16.59■□□□□ 0.25
GPC1-209ENST00000495100 CDC45O75419 566 aa16.58■□□□□ 0.25
GPC1-209ENST00000495100 NUCB1Q02818 461 aa16.58■□□□□ 0.25
GPC1-209ENST00000495100 LMOD3Q0VAK6 560 aa16.58■□□□□ 0.25
GPC1-209ENST00000495100 MRPL50Q8N5N7 158 aaKnown RBP16.58■□□□□ 0.25
GPC1-209ENST00000495100 GAS2L2Q8NHY3 880 aa16.58■□□□□ 0.24
GPC1-209ENST00000495100 E9PCH4 1651 aa16.58■□□□□ 0.24
GPC1-209ENST00000495100 ZBTB7BO15156 539 aaPredicted RBP16.57■□□□□ 0.24
GPC1-209ENST00000495100 SYNMO15061 1565 aa16.57■□□□□ 0.24
GPC1-209ENST00000495100 EIF4A2Q14240 407 aaKnown RBP16.57■□□□□ 0.24
GPC1-209ENST00000495100 ACEP12821 1306 aa16.56■□□□□ 0.24
GPC1-209ENST00000495100 ZNF518AQ6AHZ1 1483 aa16.56■□□□□ 0.24
GPC1-209ENST00000495100 JARID2Q92833 1246 aaPredicted RBP16.56■□□□□ 0.24
GPC1-209ENST00000495100 CHMP4BQ9H444 224 aaKnown RBP16.56■□□□□ 0.24
GPC1-209ENST00000495100 EID1Q9Y6B2 187 aa16.56■□□□□ 0.24
GPC1-209ENST00000495100 PKP1Q13835 747 aa16.55■□□□□ 0.24
GPC1-209ENST00000495100 CCDC27Q2M243 656 aa16.55■□□□□ 0.24
GPC1-209ENST00000495100 SMC5Q8IY18 1101 aa16.55■□□□□ 0.24
GPC1-209ENST00000495100 ZGPATQ8N5A5 531 aaKnown RBP16.55■□□□□ 0.24
GPC1-209ENST00000495100 RBM27Q9P2N5 1060 aaKnown RBP16.55■□□□□ 0.24
GPC1-209ENST00000495100 POLR1AO95602 1720 aaPredicted RBP16.55■□□□□ 0.24
GPC1-209ENST00000495100 SURF6O75683 361 aaKnown RBP16.55■□□□□ 0.24
GPC1-209ENST00000495100 ZFYVE16Q7Z3T8 1539 aa16.55■□□□□ 0.24
GPC1-209ENST00000495100 RRAGDQ9NQL2 400 aaPredicted RBP16.54■□□□□ 0.24
GPC1-209ENST00000495100 K7ELQ4 463 aaPredicted RBP16.54■□□□□ 0.24
GPC1-209ENST00000495100 HDGFP51858 240 aaKnown RBP16.54■□□□□ 0.24
GPC1-209ENST00000495100 CFAP44Q96MT7 982 aa16.54■□□□□ 0.24
GPC1-209ENST00000495100 IQGAP3Q86VI3 1631 aa16.54■□□□□ 0.24
GPC1-209ENST00000495100 HDAC1Q13547 482 aaPredicted RBP16.54■□□□□ 0.24
GPC1-209ENST00000495100 DNTTIP2Q5QJE6 756 aaKnown RBP16.54■□□□□ 0.24
GPC1-209ENST00000495100 SIRT2Q8IXJ6 389 aa16.54■□□□□ 0.24
GPC1-209ENST00000495100 TRPM2O94759 1503 aa16.54■□□□□ 0.24
GPC1-209ENST00000495100 DDX11L8A8MPP1 907 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 FOSBP53539 338 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 NPC1L1Q9UHC9 1359 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 PPFIA3O75145 1194 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 PIP4K2AP48426 406 aaPredicted RBP16.53■□□□□ 0.24
GPC1-209ENST00000495100 HMMRO75330 724 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 MADDQ8WXG6 1647 aa16.53■□□□□ 0.24
GPC1-209ENST00000495100 SDSP20132 328 aa16.52■□□□□ 0.24
GPC1-209ENST00000495100 GCC1Q96CN9 775 aa16.52■□□□□ 0.24
GPC1-209ENST00000495100 GRPEL1Q9HAV7 217 aa16.52■□□□□ 0.24
GPC1-209ENST00000495100 YTHDC2Q9H6S0 1430 aaKnown RBP16.52■□□□□ 0.24
GPC1-209ENST00000495100 KDM5AP29375 1690 aaKnown RBP16.52■□□□□ 0.24
GPC1-209ENST00000495100 SIL1Q9H173 461 aa16.52■□□□□ 0.23
GPC1-209ENST00000495100 ST18O60284 1047 aa16.52■□□□□ 0.23
GPC1-209ENST00000495100 IL13P35225 146 aa16.51■□□□□ 0.23
GPC1-209ENST00000495100 PPIP5K1Q6PFW1 1433 aa16.51■□□□□ 0.23
GPC1-209ENST00000495100 MTHFSDQ2M296 383 aaKnown RBP16.51■□□□□ 0.23
GPC1-209ENST00000495100 IFT57Q9NWB7 429 aa16.51■□□□□ 0.23
GPC1-209ENST00000495100 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
GPC1-209ENST00000495100 AMOTL2Q9Y2J4 779 aa16.5■□□□□ 0.23
GPC1-209ENST00000495100 NINLQ9Y2I6 1382 aa16.5■□□□□ 0.23
GPC1-209ENST00000495100 HDGFL1Q5TGJ6 251 aa16.5■□□□□ 0.23
GPC1-209ENST00000495100 LRRFIP2Q9Y608 721 aaKnown RBP16.5■□□□□ 0.23
GPC1-209ENST00000495100 UNC13BO14795 1591 aa16.5■□□□□ 0.23
GPC1-209ENST00000495100 ESCO1Q5FWF5 840 aa16.49■□□□□ 0.23
GPC1-209ENST00000495100 GSPT1P15170 499 aaKnown RBP16.49■□□□□ 0.23
GPC1-209ENST00000495100 TEFQ10587 303 aa16.49■□□□□ 0.23
GPC1-209ENST00000495100 ALDH1L2Q3SY69 923 aa16.49■□□□□ 0.23
GPC1-209ENST00000495100 MPRIPQ6WCQ1 1025 aa16.49■□□□□ 0.23
GPC1-209ENST00000495100 CSB-PGBD3P0DP91 1061 aa16.48■□□□□ 0.23
GPC1-209ENST00000495100 PLEKHM2Q8IWE5 1019 aa16.48■□□□□ 0.23
GPC1-209ENST00000495100 PSME1Q06323 249 aa16.48■□□□□ 0.23
GPC1-209ENST00000495100 ANTXR1Q9H6X2 564 aa16.48■□□□□ 0.23
GPC1-209ENST00000495100 BMP2KLQ5H9B9 411 aa16.48■□□□□ 0.23
GPC1-209ENST00000495100 MSNP26038 577 aaKnown RBP16.47■□□□□ 0.23
GPC1-209ENST00000495100 CT47B1P0C2W7 299 aaPredicted RBP16.47■□□□□ 0.23
GPC1-209ENST00000495100 UBTFL1P0CB47 393 aaPredicted RBP16.47■□□□□ 0.23
GPC1-209ENST00000495100 PHAXQ9H814 394 aaKnown RBP16.47■□□□□ 0.23
GPC1-209ENST00000495100 CPA1P15085 419 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 NASPP49321 788 aaPredicted RBP16.46■□□□□ 0.23
GPC1-209ENST00000495100 C9orf78Q9NZ63 289 aaPredicted RBP16.46■□□□□ 0.23
GPC1-209ENST00000495100 METP08581 1390 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 CWC27Q6UX04 472 aaKnown RBP16.46■□□□□ 0.23
GPC1-209ENST00000495100 KIAA1211Q6ZU35 1233 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 GAS2L3Q86XJ1 694 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 ABCC11Q96J66 1382 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 ZC3H6P61129 1189 aaKnown RBP16.46■□□□□ 0.23
GPC1-209ENST00000495100 ABCA6Q8N139 1617 aa16.46■□□□□ 0.23
GPC1-209ENST00000495100 LRRC59Q96AG4 307 aaKnown RBP16.45■□□□□ 0.22
GPC1-209ENST00000495100 SPG7Q9UQ90 795 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 SRGAP3O43295 1099 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 FGD1P98174 961 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 TCEANC2Q96MN5 208 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 POGZQ7Z3K3 1410 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 GNAI2P04899 355 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 MYL6BP14649 208 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 TTC21BQ7Z4L5 1316 aa16.45■□□□□ 0.22
GPC1-209ENST00000495100 AAMPQ13685 434 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 SYCE3A1L190 88 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 KDM4AO75164 1064 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 REC8O95072 547 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 MCCP23508 829 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
GPC1-209ENST00000495100 MRE11P49959 708 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 RBM10P98175 930 aaKnown RBP16.44■□□□□ 0.22
GPC1-209ENST00000495100 MAP3K19Q56UN5 1328 aa16.44■□□□□ 0.22
GPC1-209ENST00000495100 LTKP29376 864 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms