RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NRAPQ86VF7 1730 aa23.34■■□□□ 1.33
LIME1-208ENST00000493265 PHRF1Q9P1Y6 1649 aaKnown RBP23.33■■□□□ 1.33
LIME1-208ENST00000493265 USP54Q70EL1 1684 aa23.33■■□□□ 1.33
LIME1-208ENST00000493265 GCP02774 474 aa23.33■■□□□ 1.33
LIME1-208ENST00000493265 ANP32CO43423 234 aa23.32■■□□□ 1.32
LIME1-208ENST00000493265 ZC3H6P61129 1189 aaKnown RBP23.32■■□□□ 1.32
LIME1-208ENST00000493265 SF3B2Q13435 895 aaKnown RBP23.32■■□□□ 1.32
LIME1-208ENST00000493265 CRYBG1Q9Y4K1 1723 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 A0A0G2JS52 829 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 FAM83GA6ND36 823 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 MYT1Q01538 1121 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 KCNH5Q8NCM2 988 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 SLIT3O75094 1523 aa23.31■■□□□ 1.32
LIME1-208ENST00000493265 RRS1Q15050 365 aaKnown RBP23.29■■□□□ 1.32
LIME1-208ENST00000493265 KRT27Q7Z3Y8 459 aa23.29■■□□□ 1.32
LIME1-208ENST00000493265 COL14A1Q05707 1796 aaKnown RBP23.29■■□□□ 1.32
LIME1-208ENST00000493265 PPM1GO15355 546 aaPredicted RBP23.28■■□□□ 1.32
LIME1-208ENST00000493265 PRKRIP1Q9H875 184 aaPredicted RBP23.28■■□□□ 1.32
LIME1-208ENST00000493265 PARD3Q8TEW0 1356 aa23.27■■□□□ 1.32
LIME1-208ENST00000493265 ONECUT3O60422 494 aaPredicted RBP23.27■■□□□ 1.32
LIME1-208ENST00000493265 RALBP1Q15311 655 aa23.27■■□□□ 1.32
LIME1-208ENST00000493265 NFAT5O94916 1531 aa23.27■■□□□ 1.32
LIME1-208ENST00000493265 BTG4Q9NY30 223 aa23.26■■□□□ 1.31
LIME1-208ENST00000493265 CHRNA2Q15822 529 aa23.25■■□□□ 1.31
LIME1-208ENST00000493265 FAM98CQ17RN3 349 aaKnown RBP23.25■■□□□ 1.31
LIME1-208ENST00000493265 EMILIN1Q9Y6C2 1016 aa23.25■■□□□ 1.31
LIME1-208ENST00000493265 KIAA0232Q92628 1395 aa23.25■■□□□ 1.31
LIME1-208ENST00000493265 PPP2R1AP30153 589 aa23.24■■□□□ 1.31
LIME1-208ENST00000493265 PRDM11Q9NQV5 511 aa23.24■■□□□ 1.31
LIME1-208ENST00000493265 MAP3K19Q56UN5 1328 aa23.24■■□□□ 1.31
LIME1-208ENST00000493265 AMPHP49418 695 aa23.23■■□□□ 1.31
LIME1-208ENST00000493265 LTN1O94822 1766 aa23.22■■□□□ 1.31
LIME1-208ENST00000493265 POLKQ9UBT6 870 aa23.22■■□□□ 1.31
LIME1-208ENST00000493265 AATKQ6ZMQ8 1374 aa23.22■■□□□ 1.31
LIME1-208ENST00000493265 MAP2P11137 1827 aaKnown RBP23.22■■□□□ 1.31
LIME1-208ENST00000493265 ARHGEF25Q86VW2 580 aa23.21■■□□□ 1.31
LIME1-208ENST00000493265 MYBBP1AQ9BQG0 1328 aaKnown RBP23.2■■□□□ 1.3
LIME1-208ENST00000493265 MTHFSP49914 203 aa23.2■■□□□ 1.3
LIME1-208ENST00000493265 RGPD1P0DJD0 1748 aa23.19■■□□□ 1.3
LIME1-208ENST00000493265 LRP5O75197 1615 aa23.19■■□□□ 1.3
LIME1-208ENST00000493265 CPDO75976 1380 aa23.18■■□□□ 1.3
LIME1-208ENST00000493265 BAG6P46379 1132 aa23.18■■□□□ 1.3
LIME1-208ENST00000493265 FAM182BQ5T319 152 aa23.18■■□□□ 1.3
LIME1-208ENST00000493265 PEAK1Q9H792 1746 aa23.17■■□□□ 1.3
LIME1-208ENST00000493265 THSD7AQ9UPZ6 1657 aa23.17■■□□□ 1.3
LIME1-208ENST00000493265 SPATA31A5Q5VU36 1347 aa23.16■■□□□ 1.3
LIME1-208ENST00000493265 SPATA31A7Q8IWB4 1347 aa23.16■■□□□ 1.3
LIME1-208ENST00000493265 PSDA5PKW4 1024 aaPredicted RBP23.16■■□□□ 1.3
LIME1-208ENST00000493265 MIER1Q8N108 512 aa23.16■■□□□ 1.3
LIME1-208ENST00000493265 HOXC9P31274 260 aa23.15■■□□□ 1.3
LIME1-208ENST00000493265 LTV1Q96GA3 475 aaPredicted RBP23.15■■□□□ 1.3
LIME1-208ENST00000493265 HSP90AB2PQ58FF8 381 aa23.14■■□□□ 1.29
LIME1-208ENST00000493265 IP6K1Q92551 441 aa23.14■■□□□ 1.29
LIME1-208ENST00000493265 AXIN2Q9Y2T1 843 aa23.14■■□□□ 1.29
LIME1-208ENST00000493265 FLT4P35916 1363 aa23.14■■□□□ 1.29
LIME1-208ENST00000493265 TNS1Q9HBL0 1735 aaKnown RBP23.13■■□□□ 1.29
LIME1-208ENST00000493265 SMG6Q86US8 1419 aaKnown RBP23.12■■□□□ 1.29
LIME1-208ENST00000493265 CFAP53Q96M91 514 aa23.12■■□□□ 1.29
LIME1-208ENST00000493265 RTL1A6NKG5 1358 aa23.12■■□□□ 1.29
LIME1-208ENST00000493265 RGPD5Q99666 1765 aa23.12■■□□□ 1.29
LIME1-208ENST00000493265 EN1Q05925 392 aaPredicted RBP23.11■■□□□ 1.29
LIME1-208ENST00000493265 STRN4Q9NRL3 753 aa23.11■■□□□ 1.29
LIME1-208ENST00000493265 COL18A1P39060 1754 aa23.11■■□□□ 1.29
LIME1-208ENST00000493265 CAMTA1Q9Y6Y1 1673 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 CSB-PGBD3P0DP91 1061 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 EVA1CP58658 441 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 CCDC184Q52MB2 194 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 ANKRD24Q8TF21 1146 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 KIF24Q5T7B8 1368 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 LMO7Q8WWI1 1683 aa23.09■■□□□ 1.29
LIME1-208ENST00000493265 INSRP06213 1382 aa23.08■■□□□ 1.29
LIME1-208ENST00000493265 SPATA31A1Q5TZJ5 1347 aa23.07■■□□□ 1.28
LIME1-208ENST00000493265 EIF4A2Q14240 407 aaKnown RBP23.06■■□□□ 1.28
LIME1-208ENST00000493265 MRS2Q9HD23 443 aa23.06■■□□□ 1.28
LIME1-208ENST00000493265 ABCC6O95255 1503 aa23.05■■□□□ 1.28
LIME1-208ENST00000493265 DIAPH1O60610 1272 aaKnown RBP23.05■■□□□ 1.28
LIME1-208ENST00000493265 COL5A2P05997 1499 aaPredicted RBP23.04■■□□□ 1.28
LIME1-208ENST00000493265 DISP2A7MBM2 1401 aa23.03■■□□□ 1.28
LIME1-208ENST00000493265 U2SURPO15042 1029 aaKnown RBP23.03■■□□□ 1.28
LIME1-208ENST00000493265 R3HDM1Q15032 1099 aaKnown RBP23.03■■□□□ 1.28
LIME1-208ENST00000493265 USP35Q9P2H5 1018 aa23.03■■□□□ 1.28
LIME1-208ENST00000493265 COL3A1P02461 1466 aaPredicted RBP23.03■■□□□ 1.28
LIME1-208ENST00000493265 LARP1Q6PKG0 1096 aaKnown RBP23.02■■□□□ 1.28
LIME1-208ENST00000493265 NLRP2Q9NX02 1062 aa23.02■■□□□ 1.28
LIME1-208ENST00000493265 ERBB3P21860 1342 aa23.02■■□□□ 1.28
LIME1-208ENST00000493265 TRIM37O94972 964 aa23.01■■□□□ 1.27
LIME1-208ENST00000493265 IL13P35225 146 aa23.01■■□□□ 1.27
LIME1-208ENST00000493265 EZH2Q15910 746 aaKnown RBP23.01■■□□□ 1.27
LIME1-208ENST00000493265 TOM1L2Q6ZVM7 507 aa23.01■■□□□ 1.27
LIME1-208ENST00000493265 USHBP1Q8N6Y0 703 aa23■■□□□ 1.27
LIME1-208ENST00000493265 NUDCQ9Y266 331 aa22.99■■□□□ 1.27
LIME1-208ENST00000493265 WDR17Q8IZU2 1322 aa22.99■■□□□ 1.27
LIME1-208ENST00000493265 RGPD2P0DJD1 1756 aa22.99■■□□□ 1.27
LIME1-208ENST00000493265 CCER2I3L3R5 266 aa22.98■■□□□ 1.27
LIME1-208ENST00000493265 FAM196AQ6ZSG2 479 aa22.98■■□□□ 1.27
LIME1-208ENST00000493265 NBPF6Q5VWK0 638 aa22.97■■□□□ 1.27
LIME1-208ENST00000493265 NBPF4Q96M43 638 aa22.97■■□□□ 1.27
LIME1-208ENST00000493265 EYA1Q99502 592 aa22.97■■□□□ 1.27
LIME1-208ENST00000493265 U2AF1L5P0DN76 240 aaPredicted RBP22.96■■□□□ 1.27
LIME1-208ENST00000493265 U2AF1Q01081 240 aaKnown RBP eCLIP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms