RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 EIF4G2P78344 907 aaKnown RBP eCLIP25.32■■□□□ 1.64
COL9A3-214ENST00000490398 FAM182BQ5T319 152 aa25.32■■□□□ 1.64
COL9A3-214ENST00000490398 THSD7AQ9UPZ6 1657 aa25.32■■□□□ 1.64
COL9A3-214ENST00000490398 CDCA8Q53HL2 280 aa25.3■■□□□ 1.64
COL9A3-214ENST00000490398 MYOM1P52179 1685 aa25.29■■□□□ 1.64
COL9A3-214ENST00000490398 FBLN1P23142 703 aa25.29■■□□□ 1.64
COL9A3-214ENST00000490398 CARD14Q9BXL6 1004 aa25.29■■□□□ 1.64
COL9A3-214ENST00000490398 CRB1P82279 1406 aa25.27■■□□□ 1.64
COL9A3-214ENST00000490398 C11orf95C9JLR9 678 aaPredicted RBP25.26■■□□□ 1.63
COL9A3-214ENST00000490398 FYB1O15117 783 aa25.26■■□□□ 1.63
COL9A3-214ENST00000490398 BARGINQ6ZT62 677 aa25.26■■□□□ 1.63
COL9A3-214ENST00000490398 TCP11L2Q8N4U5 519 aa25.26■■□□□ 1.63
COL9A3-214ENST00000490398 POLR3GLQ9BT43 218 aa25.26■■□□□ 1.63
COL9A3-214ENST00000490398 GGNBP2Q9H3C7 697 aa25.25■■□□□ 1.63
COL9A3-214ENST00000490398 RGPD5Q99666 1765 aa25.24■■□□□ 1.63
COL9A3-214ENST00000490398 WDR17Q8IZU2 1322 aa25.24■■□□□ 1.63
COL9A3-214ENST00000490398 TOM1L2Q6ZVM7 507 aa25.23■■□□□ 1.63
COL9A3-214ENST00000490398 COG3Q96JB2 828 aa25.23■■□□□ 1.63
COL9A3-214ENST00000490398 NSD3Q9BZ95 1437 aa25.2■■□□□ 1.63
COL9A3-214ENST00000490398 THRAP3Q9Y2W1 955 aaKnown RBP25.2■■□□□ 1.62
COL9A3-214ENST00000490398 CSB-PGBD3P0DP91 1061 aa25.19■■□□□ 1.62
COL9A3-214ENST00000490398 BLMP54132 1417 aaPredicted RBP25.19■■□□□ 1.62
COL9A3-214ENST00000490398 LTN1O94822 1766 aa25.18■■□□□ 1.62
COL9A3-214ENST00000490398 DEFB132Q7Z7B7 95 aa25.18■■□□□ 1.62
COL9A3-214ENST00000490398 ABCC6O95255 1503 aa25.17■■□□□ 1.62
COL9A3-214ENST00000490398 MAP3K19Q56UN5 1328 aa25.17■■□□□ 1.62
COL9A3-214ENST00000490398 CARD10Q9BWT7 1032 aa25.17■■□□□ 1.62
COL9A3-214ENST00000490398 CCDC125Q86Z20 511 aa25.16■■□□□ 1.62
COL9A3-214ENST00000490398 ANKRD24Q8TF21 1146 aa25.16■■□□□ 1.62
COL9A3-214ENST00000490398 ERBB3P21860 1342 aa25.15■■□□□ 1.62
COL9A3-214ENST00000490398 RRS1Q15050 365 aaKnown RBP25.15■■□□□ 1.62
COL9A3-214ENST00000490398 IP6K1Q92551 441 aa25.15■■□□□ 1.62
COL9A3-214ENST00000490398 PDE3BQ13370 1112 aa25.13■■□□□ 1.61
COL9A3-214ENST00000490398 DISP2A7MBM2 1401 aa25.12■■□□□ 1.61
COL9A3-214ENST00000490398 LTV1Q96GA3 475 aaPredicted RBP25.12■■□□□ 1.61
COL9A3-214ENST00000490398 PARP4Q9UKK3 1724 aaKnown RBP25.12■■□□□ 1.61
COL9A3-214ENST00000490398 HOXC9P31274 260 aa25.11■■□□□ 1.61
COL9A3-214ENST00000490398 NLRP2Q9NX02 1062 aa25.11■■□□□ 1.61
COL9A3-214ENST00000490398 KIF20BQ96Q89 1820 aa25.11■■□□□ 1.61
COL9A3-214ENST00000490398 PANK3Q9H999 370 aa25.1■■□□□ 1.61
COL9A3-214ENST00000490398 LRRC37A3O60309 1634 aa25.1■■□□□ 1.61
COL9A3-214ENST00000490398 AMPHP49418 695 aa25.08■■□□□ 1.61
COL9A3-214ENST00000490398 DDB1Q16531 1140 aa25.08■■□□□ 1.61
COL9A3-214ENST00000490398 FAM196AQ6ZSG2 479 aa25.08■■□□□ 1.61
COL9A3-214ENST00000490398 KIF7Q2M1P5 1343 aa25.08■■□□□ 1.6
COL9A3-214ENST00000490398 WNK3Q9BYP7 1800 aa25.07■■□□□ 1.6
COL9A3-214ENST00000490398 CCDC7Q96M83 1385 aa25.07■■□□□ 1.6
COL9A3-214ENST00000490398 TRIM37O94972 964 aa25.07■■□□□ 1.6
COL9A3-214ENST00000490398 SF3B2Q13435 895 aaKnown RBP25.06■■□□□ 1.6
COL9A3-214ENST00000490398 MARCH10Q8NA82 808 aaPredicted RBP25.06■■□□□ 1.6
COL9A3-214ENST00000490398 PEAK1Q9H792 1746 aa25.04■■□□□ 1.6
COL9A3-214ENST00000490398 EN1Q05925 392 aaPredicted RBP25.04■■□□□ 1.6
COL9A3-214ENST00000490398 EMILIN1Q9Y6C2 1016 aa25.04■■□□□ 1.6
COL9A3-214ENST00000490398 CGNL1Q0VF96 1302 aa25.04■■□□□ 1.6
COL9A3-214ENST00000490398 CDCA7Q9BWT1 371 aaPredicted RBP25.03■■□□□ 1.6
COL9A3-214ENST00000490398 TNS1Q9HBL0 1735 aaKnown RBP25.03■■□□□ 1.6
COL9A3-214ENST00000490398 HSP90AB2PQ58FF8 381 aa25.02■■□□□ 1.6
COL9A3-214ENST00000490398 RGPD1P0DJD0 1748 aa25.01■■□□□ 1.59
COL9A3-214ENST00000490398 PTF1AQ7RTS3 328 aa25.01■■□□□ 1.59
COL9A3-214ENST00000490398 RTL1A6NKG5 1358 aa25.01■■□□□ 1.59
COL9A3-214ENST00000490398 SRCAPQ6ZRS2 3230 aa25.01■■□□□ 1.59
COL9A3-214ENST00000490398 BAG6P46379 1132 aa25■■□□□ 1.59
COL9A3-214ENST00000490398 OVOS2A0A0G2JMS6 1433 aa24.99■■□□□ 1.59
COL9A3-214ENST00000490398 EXOC5O00471 708 aa24.99■■□□□ 1.59
COL9A3-214ENST00000490398 IL2RBP14784 551 aa24.99■■□□□ 1.59
COL9A3-214ENST00000490398 TNNT2P45379 298 aaPredicted RBP24.98■■□□□ 1.59
COL9A3-214ENST00000490398 NBPF6Q5VWK0 638 aa24.98■■□□□ 1.59
COL9A3-214ENST00000490398 NBPF4Q96M43 638 aa24.98■■□□□ 1.59
COL9A3-214ENST00000490398 TNS2Q63HR2 1409 aa24.97■■□□□ 1.59
COL9A3-214ENST00000490398 APBA3O96018 575 aa24.97■■□□□ 1.59
COL9A3-214ENST00000490398 EZH2Q15910 746 aaKnown RBP24.97■■□□□ 1.59
COL9A3-214ENST00000490398 USHBP1Q8N6Y0 703 aa24.97■■□□□ 1.59
COL9A3-214ENST00000490398 RGPD2P0DJD1 1756 aa24.97■■□□□ 1.59
COL9A3-214ENST00000490398 INSRP06213 1382 aa24.96■■□□□ 1.59
COL9A3-214ENST00000490398 FLT4P35916 1363 aa24.96■■□□□ 1.59
COL9A3-214ENST00000490398 FAM208AQ9UK61 1670 aaKnown RBP24.96■■□□□ 1.59
COL9A3-214ENST00000490398 WASHC2AQ641Q2 1341 aa24.95■■□□□ 1.58
COL9A3-214ENST00000490398 CAMKK2Q96RR4 588 aa24.95■■□□□ 1.58
COL9A3-214ENST00000490398 POLKQ9UBT6 870 aa24.95■■□□□ 1.58
COL9A3-214ENST00000490398 PPM1GO15355 546 aaPredicted RBP24.94■■□□□ 1.58
COL9A3-214ENST00000490398 KIF24Q5T7B8 1368 aa24.92■■□□□ 1.58
COL9A3-214ENST00000490398 MEGF6O75095 1541 aa24.91■■□□□ 1.58
COL9A3-214ENST00000490398 ANKRD26Q9UPS8 1709 aa24.91■■□□□ 1.58
COL9A3-214ENST00000490398 BCL9O00512 1426 aa24.9■■□□□ 1.58
COL9A3-214ENST00000490398 AMER1Q5JTC6 1135 aaPredicted RBP24.9■■□□□ 1.58
COL9A3-214ENST00000490398 KCNQ2O43526 872 aa24.89■■□□□ 1.58
COL9A3-214ENST00000490398 KNSTRNQ9Y448 316 aa24.89■■□□□ 1.58
COL9A3-214ENST00000490398 SBF2Q86WG5 1849 aa24.89■■□□□ 1.57
COL9A3-214ENST00000490398 PER1O15534 1290 aaPredicted RBP24.88■■□□□ 1.57
COL9A3-214ENST00000490398 SMG6Q86US8 1419 aaKnown RBP24.87■■□□□ 1.57
COL9A3-214ENST00000490398 ACSBG1Q96GR2 724 aa24.87■■□□□ 1.57
COL9A3-214ENST00000490398 BCL11BQ9C0K0 894 aaPredicted RBP24.87■■□□□ 1.57
COL9A3-214ENST00000490398 NSD2O96028 1365 aa24.87■■□□□ 1.57
COL9A3-214ENST00000490398 MORC1Q86VD1 984 aa24.86■■□□□ 1.57
COL9A3-214ENST00000490398 DDX54Q8TDD1 881 aaKnown RBP24.86■■□□□ 1.57
COL9A3-214ENST00000490398 MAP2P11137 1827 aaKnown RBP24.85■■□□□ 1.57
COL9A3-214ENST00000490398 PSDA5PKW4 1024 aaPredicted RBP24.85■■□□□ 1.57
COL9A3-214ENST00000490398 EIF4A2Q14240 407 aaKnown RBP24.82■■□□□ 1.56
COL9A3-214ENST00000490398 ZCRB1Q8TBF4 217 aaKnown RBP24.82■■□□□ 1.56
COL9A3-214ENST00000490398 EYA1Q99502 592 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms