RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ARHGEF25Q86VW2 580 aa18.81■□□□□ 0.6
CUX1-209ENST00000487284 FLT4P35916 1363 aa18.8■□□□□ 0.6
CUX1-209ENST00000487284 AMPHP49418 695 aa18.8■□□□□ 0.6
CUX1-209ENST00000487284 HAP1P54257 671 aaPredicted RBP18.8■□□□□ 0.6
CUX1-209ENST00000487284 KIF24Q5T7B8 1368 aa18.79■□□□□ 0.6
CUX1-209ENST00000487284 RTL1A6NKG5 1358 aa18.78■□□□□ 0.6
CUX1-209ENST00000487284 KIAA0232Q92628 1395 aa18.78■□□□□ 0.6
CUX1-209ENST00000487284 HOXC9P31274 260 aa18.78■□□□□ 0.6
CUX1-209ENST00000487284 HSP90AB2PQ58FF8 381 aa18.78■□□□□ 0.6
CUX1-209ENST00000487284 RGPD5Q99666 1765 aa18.78■□□□□ 0.6
CUX1-209ENST00000487284 JCADQ9P266 1359 aa18.77■□□□□ 0.6
CUX1-209ENST00000487284 COL18A1P39060 1754 aa18.77■□□□□ 0.6
CUX1-209ENST00000487284 CPDO75976 1380 aa18.77■□□□□ 0.59
CUX1-209ENST00000487284 ZNF521Q96K83 1311 aa18.76■□□□□ 0.59
CUX1-209ENST00000487284 NGEFQ8N5V2 710 aa18.76■□□□□ 0.59
CUX1-209ENST00000487284 IP6K1Q92551 441 aa18.76■□□□□ 0.59
CUX1-209ENST00000487284 DIAPH1O60610 1272 aaKnown RBP18.75■□□□□ 0.59
CUX1-209ENST00000487284 CCDC146Q8IYE0 955 aa18.75■□□□□ 0.59
CUX1-209ENST00000487284 SALL2Q9Y467 1007 aaPredicted RBP18.75■□□□□ 0.59
CUX1-209ENST00000487284 CHRNA2Q15822 529 aa18.74■□□□□ 0.59
CUX1-209ENST00000487284 SUPT16HQ9Y5B9 1047 aaKnown RBP18.74■□□□□ 0.59
CUX1-209ENST00000487284 ABCC6O95255 1503 aa18.73■□□□□ 0.59
CUX1-209ENST00000487284 NEFLP07196 543 aa18.73■□□□□ 0.59
CUX1-209ENST00000487284 EIF4A2Q14240 407 aaKnown RBP18.73■□□□□ 0.59
CUX1-209ENST00000487284 PRDM11Q9NQV5 511 aa18.73■□□□□ 0.59
CUX1-209ENST00000487284 LMO7Q8WWI1 1683 aa18.73■□□□□ 0.59
CUX1-209ENST00000487284 IL13P35225 146 aa18.72■□□□□ 0.59
CUX1-209ENST00000487284 RUNDC1Q96C34 613 aa18.72■□□□□ 0.59
CUX1-209ENST00000487284 AXIN2Q9Y2T1 843 aa18.72■□□□□ 0.59
CUX1-209ENST00000487284 NUTM2BA6NNL0 878 aaPredicted RBP18.72■□□□□ 0.59
CUX1-209ENST00000487284 NUTM2EB1AL46 878 aaPredicted RBP18.72■□□□□ 0.59
CUX1-209ENST00000487284 APAF1O14727 1248 aa18.72■□□□□ 0.59
CUX1-209ENST00000487284 NUTM2AQ8IVF1 878 aaPredicted RBP18.72■□□□□ 0.59
CUX1-209ENST00000487284 RGPD1P0DJD0 1748 aa18.71■□□□□ 0.59
CUX1-209ENST00000487284 U2SURPO15042 1029 aaKnown RBP18.71■□□□□ 0.59
CUX1-209ENST00000487284 LTV1Q96GA3 475 aaPredicted RBP18.71■□□□□ 0.59
CUX1-209ENST00000487284 RGPD2P0DJD1 1756 aa18.7■□□□□ 0.58
CUX1-209ENST00000487284 COL14A1Q05707 1796 aaKnown RBP18.7■□□□□ 0.58
CUX1-209ENST00000487284 CAMTA1Q9Y6Y1 1673 aa18.7■□□□□ 0.58
CUX1-209ENST00000487284 ADAMTS2O95450 1211 aa18.69■□□□□ 0.58
CUX1-209ENST00000487284 U2AF1L5P0DN76 240 aaPredicted RBP18.69■□□□□ 0.58
CUX1-209ENST00000487284 U2AF1Q01081 240 aaKnown RBP eCLIP18.69■□□□□ 0.58
CUX1-209ENST00000487284 FKBP8Q14318 412 aa18.68■□□□□ 0.58
CUX1-209ENST00000487284 CDCA7LQ96GN5 454 aa18.68■□□□□ 0.58
CUX1-209ENST00000487284 SPATA31A6Q5VVP1 1343 aa18.68■□□□□ 0.58
CUX1-209ENST00000487284 FAM83GA6ND36 823 aa18.68■□□□□ 0.58
CUX1-209ENST00000487284 NCBP3Q53F19 620 aaKnown RBP18.68■□□□□ 0.58
CUX1-209ENST00000487284 FBXO41Q8TF61 875 aa18.68■□□□□ 0.58
CUX1-209ENST00000487284 LRP6O75581 1613 aa18.67■□□□□ 0.58
CUX1-209ENST00000487284 RNF123Q5XPI4 1314 aa18.67■□□□□ 0.58
CUX1-209ENST00000487284 PLCH1Q4KWH8 1693 aa18.67■□□□□ 0.58
CUX1-209ENST00000487284 ANKRD24Q8TF21 1146 aa18.67■□□□□ 0.58
CUX1-209ENST00000487284 ERBB3P21860 1342 aa18.66■□□□□ 0.58
CUX1-209ENST00000487284 COL5A2P05997 1499 aaPredicted RBP18.66■□□□□ 0.58
CUX1-209ENST00000487284 FAM208AQ9UK61 1670 aaKnown RBP18.65■□□□□ 0.58
CUX1-209ENST00000487284 GOLGA2Q08379 1002 aa18.65■□□□□ 0.58
CUX1-209ENST00000487284 TCP11L2Q8N4U5 519 aa18.65■□□□□ 0.58
CUX1-209ENST00000487284 HMOX1P09601 288 aa18.64■□□□□ 0.58
CUX1-209ENST00000487284 PLEKHF1Q96S99 279 aa18.64■□□□□ 0.58
CUX1-209ENST00000487284 EYA1Q99502 592 aa18.64■□□□□ 0.58
CUX1-209ENST00000487284 PHF23Q9BUL5 403 aaPredicted RBP18.64■□□□□ 0.58
CUX1-209ENST00000487284 DLG5Q8TDM6 1919 aa18.64■□□□□ 0.57
CUX1-209ENST00000487284 IGSF1Q8N6C5 1336 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 CCDC27Q2M243 656 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 NBPF6Q5VWK0 638 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 AEBP1Q8IUX7 1158 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 NBPF4Q96M43 638 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 BTG4Q9NY30 223 aa18.63■□□□□ 0.57
CUX1-209ENST00000487284 NRAPQ86VF7 1730 aa18.62■□□□□ 0.57
CUX1-209ENST00000487284 SLFN5Q08AF3 891 aa18.62■□□□□ 0.57
CUX1-209ENST00000487284 SULT6B1Q6IMI4 303 aa18.62■□□□□ 0.57
CUX1-209ENST00000487284 TRMT2AQ8IZ69 625 aaKnown RBP18.62■□□□□ 0.57
CUX1-209ENST00000487284 USHBP1Q8N6Y0 703 aa18.62■□□□□ 0.57
CUX1-209ENST00000487284 DUSP27Q5VZP5 1158 aa18.61■□□□□ 0.57
CUX1-209ENST00000487284 WWC1Q8IX03 1113 aa18.61■□□□□ 0.57
CUX1-209ENST00000487284 RSPH6AQ9H0K4 717 aa18.61■□□□□ 0.57
CUX1-209ENST00000487284 PNNQ9H307 717 aaKnown RBP18.61■□□□□ 0.57
CUX1-209ENST00000487284 KDRP35968 1356 aa18.61■□□□□ 0.57
CUX1-209ENST00000487284 NWD2Q9ULI1 1742 aa18.61■□□□□ 0.57
CUX1-209ENST00000487284 FCHSD2O94868 740 aa18.6■□□□□ 0.57
CUX1-209ENST00000487284 CSB-PGBD3P0DP91 1061 aa18.6■□□□□ 0.57
CUX1-209ENST00000487284 WDR17Q8IZU2 1322 aa18.6■□□□□ 0.57
CUX1-209ENST00000487284 ERICH6BQ5W0A0 696 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 STRN4Q9NRL3 753 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 RCAN3Q9UKA8 241 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 NCAPD2Q15021 1401 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 SLIT2O94813 1529 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 PRKAR2BP31323 418 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 C8orf37Q96NL8 207 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 NLRP2Q9NX02 1062 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 MAPK8IP3Q9UPT6 1336 aa18.59■□□□□ 0.57
CUX1-209ENST00000487284 E9PSI1 815 aa18.58■□□□□ 0.56
CUX1-209ENST00000487284 RRP7AQ9Y3A4 280 aaKnown RBP18.58■□□□□ 0.56
CUX1-209ENST00000487284 EVA1CP58658 441 aa18.57■□□□□ 0.56
CUX1-209ENST00000487284 LARP1Q6PKG0 1096 aaKnown RBP18.57■□□□□ 0.56
CUX1-209ENST00000487284 TOM1L2Q6ZVM7 507 aa18.56■□□□□ 0.56
CUX1-209ENST00000487284 WDR63Q8IWG1 891 aa18.56■□□□□ 0.56
CUX1-209ENST00000487284 NGLY1Q96IV0 654 aa18.56■□□□□ 0.56
CUX1-209ENST00000487284 TMPOP42166 694 aaKnown RBP18.55■□□□□ 0.56
CUX1-209ENST00000487284 SPINK5Q9NQ38 1064 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms