RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 PRDM15P57071 1507 aaPredicted RBP16.27■□□□□ 0.2
HMGN1-216ENST00000486741 NEXNQ0ZGT2 675 aa16.27■□□□□ 0.2
HMGN1-216ENST00000486741 GORABQ5T7V8 394 aa16.27■□□□□ 0.2
HMGN1-216ENST00000486741 PLEKHO1Q53GL0 409 aaPredicted RBP16.27■□□□□ 0.19
HMGN1-216ENST00000486741 RIC3Q7Z5B4 369 aa16.27■□□□□ 0.19
HMGN1-216ENST00000486741 NAP1L5Q96NT1 182 aaPredicted RBP16.26■□□□□ 0.19
HMGN1-216ENST00000486741 IL1RAPL2Q9NP60 686 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 ERVK-7P63135 1459 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 GNAI2P04899 355 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 GPATCH3Q96I76 525 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 GNAT3A8MTJ3 354 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 REC8O95072 547 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 ALDH1L2Q3SY69 923 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 INTS3Q68E01 1043 aaKnown RBP16.26■□□□□ 0.19
HMGN1-216ENST00000486741 NPC1L1Q9UHC9 1359 aa16.26■□□□□ 0.19
HMGN1-216ENST00000486741 TAF7LQ5H9L4 462 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 CHMP5Q9NZZ3 219 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 GOLGA6L3A6NEY3 463 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 MAP4K4O95819 1239 aaPredicted RBP16.25■□□□□ 0.19
HMGN1-216ENST00000486741 GNAI3P08754 354 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 MPRIPQ6WCQ1 1025 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 ZFYVE16Q7Z3T8 1539 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 CCDC27Q2M243 656 aa16.25■□□□□ 0.19
HMGN1-216ENST00000486741 L1TD1Q5T7N2 865 aaKnown RBP16.25■□□□□ 0.19
HMGN1-216ENST00000486741 TRIM35Q9UPQ4 493 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 IFIT2P09913 472 aaKnown RBP16.24■□□□□ 0.19
HMGN1-216ENST00000486741 STRN4Q9NRL3 753 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 ANXA1P04083 346 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 KCNA6P17658 529 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 PUS7Q96PZ0 661 aaKnown RBP16.24■□□□□ 0.19
HMGN1-216ENST00000486741 DIAPH3Q9NSV4 1193 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 HDAC5Q9UQL6 1122 aa16.24■□□□□ 0.19
HMGN1-216ENST00000486741 BLMP54132 1417 aaPredicted RBP16.24■□□□□ 0.19
HMGN1-216ENST00000486741 MYL6BP14649 208 aa16.23■□□□□ 0.19
HMGN1-216ENST00000486741 TRPM2O94759 1503 aa16.23■□□□□ 0.19
HMGN1-216ENST00000486741 SEC24BO95487 1268 aa16.22■□□□□ 0.19
HMGN1-216ENST00000486741 RSPH6AQ9H0K4 717 aa16.22■□□□□ 0.19
HMGN1-216ENST00000486741 DDX49Q9Y6V7 483 aaKnown RBP16.22■□□□□ 0.19
HMGN1-216ENST00000486741 LTKP29376 864 aa16.22■□□□□ 0.19
HMGN1-216ENST00000486741 DDX58O95786 925 aaKnown RBP16.22■□□□□ 0.19
HMGN1-216ENST00000486741 C8orf34Q49A92 452 aa16.22■□□□□ 0.19
HMGN1-216ENST00000486741 BTBD11A6QL63 1104 aa16.22■□□□□ 0.19
HMGN1-216ENST00000486741 GOLGA6L4A6NEF3 574 aa16.21■□□□□ 0.19
HMGN1-216ENST00000486741 G3BP1Q13283 466 aaKnown RBP eCLIP16.21■□□□□ 0.19
HMGN1-216ENST00000486741 VAMP4O75379 141 aa16.21■□□□□ 0.18
HMGN1-216ENST00000486741 ZMYM4Q5VZL5 1548 aa16.21■□□□□ 0.18
HMGN1-216ENST00000486741 CCT4P50991 539 aaKnown RBP16.2■□□□□ 0.18
HMGN1-216ENST00000486741 SRCIN1Q9C0H9 1055 aa16.2■□□□□ 0.18
HMGN1-216ENST00000486741 SIL1Q9H173 461 aa16.2■□□□□ 0.18
HMGN1-216ENST00000486741 DDX54Q8TDD1 881 aaKnown RBP16.2■□□□□ 0.18
HMGN1-216ENST00000486741 NEO1Q92859 1461 aa16.19■□□□□ 0.18
HMGN1-216ENST00000486741 TSHZ3Q63HK5 1081 aa16.19■□□□□ 0.18
HMGN1-216ENST00000486741 SRGAP3O43295 1099 aa16.19■□□□□ 0.18
HMGN1-216ENST00000486741 IL16Q14005 1332 aa16.19■□□□□ 0.18
HMGN1-216ENST00000486741 MTHFSDQ2M296 383 aaKnown RBP16.19■□□□□ 0.18
HMGN1-216ENST00000486741 CROCC2H7BZ55 1655 aa16.18■□□□□ 0.18
HMGN1-216ENST00000486741 NEK4P51957 841 aa16.18■□□□□ 0.18
HMGN1-216ENST00000486741 TAF7Q15545 349 aaPredicted RBP16.18■□□□□ 0.18
HMGN1-216ENST00000486741 MEIS3Q99687 375 aa16.18■□□□□ 0.18
HMGN1-216ENST00000486741 MAP3K19Q56UN5 1328 aa16.17■□□□□ 0.18
HMGN1-216ENST00000486741 LRRCC1Q9C099 1032 aa16.17■□□□□ 0.18
HMGN1-216ENST00000486741 HSP90B1P14625 803 aaKnown RBP16.17■□□□□ 0.18
HMGN1-216ENST00000486741 TATP17735 454 aaPredicted RBP16.17■□□□□ 0.18
HMGN1-216ENST00000486741 IL13P35225 146 aa16.17■□□□□ 0.18
HMGN1-216ENST00000486741 RPAP2Q8IXW5 612 aaPredicted RBP16.17■□□□□ 0.18
HMGN1-216ENST00000486741 MRPL50Q8N5N7 158 aaKnown RBP16.17■□□□□ 0.18
HMGN1-216ENST00000486741 MLH3Q9UHC1 1453 aa16.17■□□□□ 0.18
HMGN1-216ENST00000486741 IQGAP3Q86VI3 1631 aa16.17■□□□□ 0.18
HMGN1-216ENST00000486741 NUTM1Q86Y26 1132 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 DDX11L8A8MPP1 907 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 LRRC59Q96AG4 307 aaKnown RBP16.16■□□□□ 0.18
HMGN1-216ENST00000486741 EYA1Q99502 592 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 CLASRPQ8N2M8 674 aaKnown RBP16.16■□□□□ 0.18
HMGN1-216ENST00000486741 CLTCL1P53675 1640 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 PLXNC1O60486 1568 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 METP08581 1390 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 NEUROD6Q96NK8 337 aa16.16■□□□□ 0.18
HMGN1-216ENST00000486741 FLIIQ13045 1269 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 TOM1L2Q6ZVM7 507 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 TBC1D2Q9BYX2 928 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 C16orf71Q8IYS4 520 aaPredicted RBP16.15■□□□□ 0.18
HMGN1-216ENST00000486741 PRDM11Q9NQV5 511 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 CHRNA2Q15822 529 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 SBNO2Q9Y2G9 1366 aa16.15■□□□□ 0.18
HMGN1-216ENST00000486741 DNTTIP2Q5QJE6 756 aaKnown RBP16.14■□□□□ 0.17
HMGN1-216ENST00000486741 ZNF521Q96K83 1311 aa16.14■□□□□ 0.17
HMGN1-216ENST00000486741 MCTP1Q6DN14 999 aa16.14■□□□□ 0.17
HMGN1-216ENST00000486741 LRRFIP2Q9Y608 721 aaKnown RBP16.14■□□□□ 0.17
HMGN1-216ENST00000486741 KCNH5Q8NCM2 988 aa16.14■□□□□ 0.17
HMGN1-216ENST00000486741 KDM2BQ8NHM5 1336 aa16.14■□□□□ 0.17
HMGN1-216ENST00000486741 BRPF3Q9ULD4 1205 aa16.14■□□□□ 0.17
HMGN1-216ENST00000486741 TRPM1Q7Z4N2 1603 aa16.13■□□□□ 0.17
HMGN1-216ENST00000486741 ZBTB40Q9NUA8 1239 aa16.13■□□□□ 0.17
HMGN1-216ENST00000486741 TSPOAP1O95153 1857 aa16.13■□□□□ 0.17
HMGN1-216ENST00000486741 ZRSR1Q15695 479 aaKnown RBP16.12■□□□□ 0.17
HMGN1-216ENST00000486741 KRT28Q7Z3Y7 464 aa16.12■□□□□ 0.17
HMGN1-216ENST00000486741 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
HMGN1-216ENST00000486741 KDM5AP29375 1690 aaKnown RBP16.12■□□□□ 0.17
HMGN1-216ENST00000486741 PTCD1O75127 700 aaKnown RBP16.11■□□□□ 0.17
HMGN1-216ENST00000486741 CABLES1Q8TDN4 633 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms