RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NSD2O96028 1365 aa21.92■■□□□ 1.1
UPF3A-208ENST00000484246 WASHC2AQ641Q2 1341 aa21.92■■□□□ 1.1
UPF3A-208ENST00000484246 ZEB1P37275 1124 aaPredicted RBP21.92■■□□□ 1.1
UPF3A-208ENST00000484246 SPATA31A1Q5TZJ5 1347 aa21.91■■□□□ 1.1
UPF3A-208ENST00000484246 PPP4R3CPQ6ZMV5 832 aa21.91■■□□□ 1.1
UPF3A-208ENST00000484246 GGNBP2Q9H3C7 697 aa21.91■■□□□ 1.1
UPF3A-208ENST00000484246 KIF20BQ96Q89 1820 aa21.91■■□□□ 1.1
UPF3A-208ENST00000484246 SOX12O15370 315 aa21.9■■□□□ 1.1
UPF3A-208ENST00000484246 BLMP54132 1417 aaPredicted RBP21.89■■□□□ 1.1
UPF3A-208ENST00000484246 RTL1A6NKG5 1358 aa21.89■■□□□ 1.1
UPF3A-208ENST00000484246 AXIN2Q9Y2T1 843 aa21.89■■□□□ 1.09
UPF3A-208ENST00000484246 CRB1P82279 1406 aa21.89■■□□□ 1.09
UPF3A-208ENST00000484246 KIF24Q5T7B8 1368 aa21.88■■□□□ 1.09
UPF3A-208ENST00000484246 WDR17Q8IZU2 1322 aa21.88■■□□□ 1.09
UPF3A-208ENST00000484246 STRN4Q9NRL3 753 aa21.88■■□□□ 1.09
UPF3A-208ENST00000484246 EVA1CP58658 441 aa21.87■■□□□ 1.09
UPF3A-208ENST00000484246 LARP1Q6PKG0 1096 aaKnown RBP21.87■■□□□ 1.09
UPF3A-208ENST00000484246 CCDC9Q9Y3X0 531 aaKnown RBP21.87■■□□□ 1.09
UPF3A-208ENST00000484246 MAP3K19Q56UN5 1328 aa21.86■■□□□ 1.09
UPF3A-208ENST00000484246 THSD7AQ9UPZ6 1657 aa21.86■■□□□ 1.09
UPF3A-208ENST00000484246 BARGINQ6ZT62 677 aa21.86■■□□□ 1.09
UPF3A-208ENST00000484246 ERBB3P21860 1342 aa21.85■■□□□ 1.09
UPF3A-208ENST00000484246 ZBTB7CA1YPR0 619 aa21.85■■□□□ 1.09
UPF3A-208ENST00000484246 IP6K1Q92551 441 aa21.85■■□□□ 1.09
UPF3A-208ENST00000484246 THRAP3Q9Y2W1 955 aaKnown RBP21.85■■□□□ 1.09
UPF3A-208ENST00000484246 TCP11L2Q8N4U5 519 aa21.83■■□□□ 1.09
UPF3A-208ENST00000484246 LTN1O94822 1766 aa21.83■■□□□ 1.09
UPF3A-208ENST00000484246 PER1O15534 1290 aaPredicted RBP21.82■■□□□ 1.08
UPF3A-208ENST00000484246 AMER1Q5JTC6 1135 aaPredicted RBP21.82■■□□□ 1.08
UPF3A-208ENST00000484246 SEPT12Q8IYM1 358 aa21.82■■□□□ 1.08
UPF3A-208ENST00000484246 KNSTRNQ9Y448 316 aa21.82■■□□□ 1.08
UPF3A-208ENST00000484246 ANKRD26Q9UPS8 1709 aa21.82■■□□□ 1.08
UPF3A-208ENST00000484246 NPC1L1Q9UHC9 1359 aa21.82■■□□□ 1.08
UPF3A-208ENST00000484246 HOXC9P31274 260 aa21.81■■□□□ 1.08
UPF3A-208ENST00000484246 FAM98CQ17RN3 349 aaKnown RBP21.81■■□□□ 1.08
UPF3A-208ENST00000484246 CARD10Q9BWT7 1032 aa21.8■■□□□ 1.08
UPF3A-208ENST00000484246 FLT4P35916 1363 aa21.79■■□□□ 1.08
UPF3A-208ENST00000484246 TOM1L2Q6ZVM7 507 aa21.79■■□□□ 1.08
UPF3A-208ENST00000484246 SMG6Q86US8 1419 aaKnown RBP21.79■■□□□ 1.08
UPF3A-208ENST00000484246 RRS1Q15050 365 aaKnown RBP21.78■■□□□ 1.08
UPF3A-208ENST00000484246 DISP2A7MBM2 1401 aa21.78■■□□□ 1.08
UPF3A-208ENST00000484246 INSRP06213 1382 aa21.77■■□□□ 1.08
UPF3A-208ENST00000484246 FBLN1P23142 703 aa21.77■■□□□ 1.08
UPF3A-208ENST00000484246 AMPHP49418 695 aa21.77■■□□□ 1.08
UPF3A-208ENST00000484246 ANKRD24Q8TF21 1146 aa21.77■■□□□ 1.08
UPF3A-208ENST00000484246 CSB-PGBD3P0DP91 1061 aa21.76■■□□□ 1.07
UPF3A-208ENST00000484246 FAM208AQ9UK61 1670 aaKnown RBP21.75■■□□□ 1.07
UPF3A-208ENST00000484246 PEAK1Q9H792 1746 aa21.75■■□□□ 1.07
UPF3A-208ENST00000484246 CDCA7Q9BWT1 371 aaPredicted RBP21.75■■□□□ 1.07
UPF3A-208ENST00000484246 USP35Q9P2H5 1018 aa21.75■■□□□ 1.07
UPF3A-208ENST00000484246 KRT27Q7Z3Y8 459 aa21.74■■□□□ 1.07
UPF3A-208ENST00000484246 PARP4Q9UKK3 1724 aaKnown RBP21.73■■□□□ 1.07
UPF3A-208ENST00000484246 POLKQ9UBT6 870 aa21.73■■□□□ 1.07
UPF3A-208ENST00000484246 EMILIN1Q9Y6C2 1016 aa21.73■■□□□ 1.07
UPF3A-208ENST00000484246 RGPD5Q99666 1765 aa21.73■■□□□ 1.07
UPF3A-208ENST00000484246 A0A0G2JS52 829 aa21.71■■□□□ 1.07
UPF3A-208ENST00000484246 MYT1Q01538 1121 aa21.71■■□□□ 1.07
UPF3A-208ENST00000484246 MORC1Q86VD1 984 aa21.71■■□□□ 1.07
UPF3A-208ENST00000484246 UPF1Q92900 1129 aaKnown RBP eCLIP21.71■■□□□ 1.07
UPF3A-208ENST00000484246 WNK3Q9BYP7 1800 aa21.7■■□□□ 1.06
UPF3A-208ENST00000484246 NCAPD2Q15021 1401 aa21.7■■□□□ 1.06
UPF3A-208ENST00000484246 LRRC37A3O60309 1634 aa21.69■■□□□ 1.06
UPF3A-208ENST00000484246 HSP90AB2PQ58FF8 381 aa21.69■■□□□ 1.06
UPF3A-208ENST00000484246 NLRP2Q9NX02 1062 aa21.69■■□□□ 1.06
UPF3A-208ENST00000484246 BRWD3Q6RI45 1802 aa21.69■■□□□ 1.06
UPF3A-208ENST00000484246 TNS2Q63HR2 1409 aa21.67■■□□□ 1.06
UPF3A-208ENST00000484246 MAPK8IP2Q13387 824 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-208ENST00000484246 BCL9O00512 1426 aa21.65■■□□□ 1.06
UPF3A-208ENST00000484246 LTV1Q96GA3 475 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-208ENST00000484246 IL2RBP14784 551 aa21.64■■□□□ 1.05
UPF3A-208ENST00000484246 TNNT2P45379 298 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-208ENST00000484246 DDB1Q16531 1140 aa21.64■■□□□ 1.05
UPF3A-208ENST00000484246 CCDC125Q86Z20 511 aa21.64■■□□□ 1.05
UPF3A-208ENST00000484246 PDE3BQ13370 1112 aa21.63■■□□□ 1.05
UPF3A-208ENST00000484246 CC2D1BQ5T0F9 858 aaKnown RBP21.62■■□□□ 1.05
UPF3A-208ENST00000484246 NBPF6Q5VWK0 638 aa21.62■■□□□ 1.05
UPF3A-208ENST00000484246 NBPF4Q96M43 638 aa21.62■■□□□ 1.05
UPF3A-208ENST00000484246 OVOS2A0A0G2JMS6 1433 aa21.62■■□□□ 1.05
UPF3A-208ENST00000484246 PLEKHG2Q9H7P9 1386 aa21.61■■□□□ 1.05
UPF3A-208ENST00000484246 PPM1GO15355 546 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-208ENST00000484246 FAM196AQ6ZSG2 479 aa21.61■■□□□ 1.05
UPF3A-208ENST00000484246 MEGF6O75095 1541 aa21.6■■□□□ 1.05
UPF3A-208ENST00000484246 EIF4A2Q14240 407 aaKnown RBP21.59■■□□□ 1.05
UPF3A-208ENST00000484246 MAP2P11137 1827 aaKnown RBP21.58■■□□□ 1.05
UPF3A-208ENST00000484246 EP400Q96L91 3159 aa21.58■■□□□ 1.04
UPF3A-208ENST00000484246 EXOC5O00471 708 aa21.57■■□□□ 1.04
UPF3A-208ENST00000484246 IGSF1Q8N6C5 1336 aa21.56■■□□□ 1.04
UPF3A-208ENST00000484246 MARCH10Q8NA82 808 aaPredicted RBP21.56■■□□□ 1.04
UPF3A-208ENST00000484246 MTHFSP49914 203 aa21.55■■□□□ 1.04
UPF3A-208ENST00000484246 FAM182BQ5T319 152 aa21.55■■□□□ 1.04
UPF3A-208ENST00000484246 EYA1Q99502 592 aa21.55■■□□□ 1.04
UPF3A-208ENST00000484246 PARD3Q8TEW0 1356 aa21.54■■□□□ 1.04
UPF3A-208ENST00000484246 COL3A1P02461 1466 aaPredicted RBP21.53■■□□□ 1.04
UPF3A-208ENST00000484246 USHBP1Q8N6Y0 703 aa21.53■■□□□ 1.04
UPF3A-208ENST00000484246 RAPGEF4Q8WZA2 1011 aa21.53■■□□□ 1.04
UPF3A-208ENST00000484246 SRCAPQ6ZRS2 3230 aa21.52■■□□□ 1.04
UPF3A-208ENST00000484246 RGPD2P0DJD1 1756 aa21.52■■□□□ 1.04
UPF3A-208ENST00000484246 IL13P35225 146 aa21.52■■□□□ 1.04
UPF3A-208ENST00000484246 RGPD1P0DJD0 1748 aa21.52■■□□□ 1.03
UPF3A-208ENST00000484246 KDRP35968 1356 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms