RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 CUX2O14529 1486 aa8.07□□□□□ -1.12
ECHDC1-215ENST00000475319 MOXD2PA6NHM9 499 aa8.07□□□□□ -1.12
ECHDC1-215ENST00000475319 H3BM21 787 aa8.07□□□□□ -1.12
ECHDC1-215ENST00000475319 KRTAP9-2Q9BYQ4 174 aa8.07□□□□□ -1.12
ECHDC1-215ENST00000475319 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 RCCD1A6NED2 376 aa8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 LILRB3O75022 631 aa8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 HMGB1P09429 215 aaKnown RBP8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 NUTM1Q86Y26 1132 aa8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 PBXIP1Q96AQ6 731 aa8.06□□□□□ -1.12
ECHDC1-215ENST00000475319 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 USP17L8P0C7I0 530 aa8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 NDUFV2P19404 249 aa8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 RFX1P22670 979 aa8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 RBM25P49756 843 aaKnown RBP8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 ADAMTS19Q8TE59 1207 aa8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 PCDHB15Q9Y5E8 787 aa8.05□□□□□ -1.12
ECHDC1-215ENST00000475319 HDGFL1Q5TGJ6 251 aa8.04□□□□□ -1.12
ECHDC1-215ENST00000475319 NCAPD3P42695 1498 aa8.04□□□□□ -1.12
ECHDC1-215ENST00000475319 KRTAP9-6A0A140TA67 174 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NR1I2O75469 434 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NCLP19338 710 aaKnown RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 TEX2Q8IWB9 1127 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 SNIP1Q8TAD8 396 aaKnown RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NUTM2BA6NNL0 878 aaPredicted RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 DDX11L8A8MPP1 907 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NUTM2EB1AL46 878 aaPredicted RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 PATL2C9JE40 543 aaKnown RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 SMPD1P17405 629 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 KMT5BQ4FZB7 885 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 CFAP70Q5T0N1 1121 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NUTM2DQ5VT03 806 aaPredicted RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 KRTAP1-3Q8IUG1 177 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 NUTM2AQ8IVF1 878 aaPredicted RBP8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 SULF1Q8IWU6 871 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 CABLES1Q8TDN4 633 aa8.03□□□□□ -1.12
ECHDC1-215ENST00000475319 SMARCA2P51531 1590 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 BRD1O95696 1058 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 GJA5P36382 358 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 KCNA1Q09470 495 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 GPAT2Q6NUI2 795 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 GJD4Q96KN9 370 aaPredicted RBP8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 EYA1Q99502 592 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 NDUFB9Q9Y6M9 179 aa8.02□□□□□ -1.13
ECHDC1-215ENST00000475319 ERBB4Q15303 1308 aa8.01□□□□□ -1.13
ECHDC1-215ENST00000475319 CARNS1A5YM72 827 aa8.01□□□□□ -1.13
ECHDC1-215ENST00000475319 CALD1Q05682 793 aaKnown RBP8.01□□□□□ -1.13
ECHDC1-215ENST00000475319 HSP90AA2PQ14568 343 aaPredicted RBP8.01□□□□□ -1.13
ECHDC1-215ENST00000475319 WASHC2CQ9Y4E1 1318 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 CSB-PGBD3P0DP91 1061 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 VEGFBP49765 207 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 SRPK2P78362 688 aaKnown RBP8□□□□□ -1.13
ECHDC1-215ENST00000475319 CNGB1Q14028 1251 aaPredicted RBP8□□□□□ -1.13
ECHDC1-215ENST00000475319 FAM43AQ8N2R8 423 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 USP35Q9P2H5 1018 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 USTQ9Y2C2 406 aa8□□□□□ -1.13
ECHDC1-215ENST00000475319 ARID4BQ4LE39 1312 aaPredicted RBP8□□□□□ -1.13
ECHDC1-215ENST00000475319 CENPJQ9HC77 1338 aaPredicted RBP8□□□□□ -1.13
ECHDC1-215ENST00000475319 ACTN4O43707 911 aaKnown RBP7.99□□□□□ -1.13
ECHDC1-215ENST00000475319 CANXP27824 592 aaKnown RBP7.99□□□□□ -1.13
ECHDC1-215ENST00000475319 FOXK2Q01167 660 aa7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 FTSJ3Q8IY81 847 aaKnown RBP7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 HMX1Q9NP08 348 aaPredicted RBP7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 NOP58Q9Y2X3 529 aaKnown RBP7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 ATAD2BQ9ULI0 1458 aa7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 GPR37L1O60883 481 aa7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 WASHC4Q2M389 1173 aa7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 PRPF38BQ5VTL8 546 aaKnown RBP7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 PPP1R12CQ9BZL4 782 aa7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 DNMT3AQ9Y6K1 912 aaPredicted RBP7.98□□□□□ -1.13
ECHDC1-215ENST00000475319 HMGXB3Q12766 1538 aa7.97□□□□□ -1.13
ECHDC1-215ENST00000475319 DNAJB2P25686 324 aa7.97□□□□□ -1.13
ECHDC1-215ENST00000475319 VAC14Q08AM6 782 aa7.97□□□□□ -1.13
ECHDC1-215ENST00000475319 ZBTB3Q9H5J0 574 aa7.97□□□□□ -1.13
ECHDC1-215ENST00000475319 WASHC2AQ641Q2 1341 aa7.96□□□□□ -1.13
ECHDC1-215ENST00000475319 TRIM34Q9BYJ4 488 aa7.96□□□□□ -1.14
ECHDC1-215ENST00000475319 BAZ1BQ9UIG0 1483 aaKnown RBP7.96□□□□□ -1.14
ECHDC1-215ENST00000475319 BAZ1AQ9NRL2 1556 aaPredicted RBP7.95□□□□□ -1.14
ECHDC1-215ENST00000475319 KDM4AO75164 1064 aa7.95□□□□□ -1.14
ECHDC1-215ENST00000475319 CTDSPL2Q05D32 466 aa7.95□□□□□ -1.14
ECHDC1-215ENST00000475319 RDH13Q8NBN7 331 aa7.95□□□□□ -1.14
ECHDC1-215ENST00000475319 TMEM134Q9H6X4 195 aa7.95□□□□□ -1.14
ECHDC1-215ENST00000475319 PALM3A6NDB9 673 aaPredicted RBP7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 WNT7AO00755 349 aa7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 PPM1GO15355 546 aaPredicted RBP7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 ZBTB24O43167 697 aaPredicted RBP7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 GTF2E1P29083 439 aaPredicted RBP7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 CHMP4BQ9H444 224 aaKnown RBP7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 IVNS1ABPQ9Y6Y0 642 aa7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 SMARCA4P51532 1647 aa7.94□□□□□ -1.14
ECHDC1-215ENST00000475319 LMOD1P29536 600 aaPredicted RBP7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 ALG2Q9H553 416 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 J3QL48 77 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 HOXA2O43364 376 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 IGSF3O75054 1194 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 HSP90AA1P07900 732 aaKnown RBP7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 PRDM4Q9UKN5 801 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 PCDHGC3Q9UN70 934 aa7.93□□□□□ -1.14
ECHDC1-215ENST00000475319 PDS5BQ9NTI5 1447 aa7.92□□□□□ -1.14
ECHDC1-215ENST00000475319 E9PSI1 815 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms