RNA–Protein interactions for RNA: ENST00000471894.1

PUM1-208, Transcript of pumilio RNA binding family member 1, human

TSL 3

Gene PUM1, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-208	ENST00000471894	RTL1	A6NKG5	1358 aa		14.05	□□□□□ -0.16
PUM1-208	ENST00000471894	NUTM2B	A6NNL0	878 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	NUTM2E	B1AL46	878 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	U2AF1L5	P0DN76	240 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	IL13	P35225	146 aa		14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	U2AF1	Q01081	240 aa	Known RBP eCLIP	14.04	□□□□□ -0.16	2e-8	■□□□□ 9.2
PUM1-208	ENST00000471894	EIF4A2	Q14240	407 aa	Known RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	CHRNA2	Q15822	529 aa		14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	NUTM2A	Q8IVF1	878 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	LTV1	Q96GA3	475 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	PRDM11	Q9NQV5	511 aa		14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	KIAA0232	Q92628	1395 aa		14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	COL3A1	P02461	1466 aa	Predicted RBP	14.04	□□□□□ -0.16
PUM1-208	ENST00000471894	YTHDC1	Q96MU7	727 aa	Known RBP	14.03	□□□□□ -0.16
PUM1-208	ENST00000471894	CPD	O75976	1380 aa		14.03	□□□□□ -0.16
PUM1-208	ENST00000471894	JCAD	Q9P266	1359 aa		14.03	□□□□□ -0.16
PUM1-208	ENST00000471894	COL22A1	Q8NFW1	1626 aa	Predicted RBP	14.03	□□□□□ -0.16
PUM1-208	ENST00000471894	AXIN2	Q9Y2T1	843 aa		14.02	□□□□□ -0.17
PUM1-208	ENST00000471894	ABCA3	Q99758	1704 aa		14.01	□□□□□ -0.17
PUM1-208	ENST00000471894	FAM83G	A6ND36	823 aa		14.01	□□□□□ -0.17
PUM1-208	ENST00000471894	SHPRH	Q149N8	1683 aa		14.01	□□□□□ -0.17
PUM1-208	ENST00000471894	ADAMTS2	O95450	1211 aa		14	□□□□□ -0.17
PUM1-208	ENST00000471894	ANKRD24	Q8TF21	1146 aa		14	□□□□□ -0.17
PUM1-208	ENST00000471894	BLM	P54132	1417 aa	Predicted RBP	13.99	□□□□□ -0.17
PUM1-208	ENST00000471894	RGPD5	Q99666	1765 aa		13.99	□□□□□ -0.17
PUM1-208	ENST00000471894	HMOX1	P09601	288 aa		13.99	□□□□□ -0.17
PUM1-208	ENST00000471894	EYA1	Q99502	592 aa		13.99	□□□□□ -0.17
PUM1-208	ENST00000471894	PNN	Q9H307	717 aa	Known RBP	13.99	□□□□□ -0.17
PUM1-208	ENST00000471894	SPATA31A6	Q5VVP1	1343 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	FCHSD2	O94868	740 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	CSB-PGBD3	P0DP91	1061 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	EVA1C	P58658	441 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	CCDC146	Q8IYE0	955 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	COL18A1	P39060	1754 aa		13.98	□□□□□ -0.17
PUM1-208	ENST00000471894	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
PUM1-208	ENST00000471894	SULT6B1	Q6IMI4	303 aa		13.97	□□□□□ -0.17
PUM1-208	ENST00000471894	FBXO41	Q8TF61	875 aa		13.97	□□□□□ -0.17
PUM1-208	ENST00000471894	RUNDC1	Q96C34	613 aa		13.97	□□□□□ -0.17
PUM1-208	ENST00000471894	ABCC6	O95255	1503 aa		13.96	□□□□□ -0.17
PUM1-208	ENST00000471894	NEFM	P07197	916 aa		13.96	□□□□□ -0.17
PUM1-208	ENST00000471894	NBPF6	Q5VWK0	638 aa		13.96	□□□□□ -0.17
PUM1-208	ENST00000471894	NBPF4	Q96M43	638 aa		13.96	□□□□□ -0.17
PUM1-208	ENST00000471894	BTG4	Q9NY30	223 aa		13.96	□□□□□ -0.17
PUM1-208	ENST00000471894	ERBB3	P21860	1342 aa		13.95	□□□□□ -0.18
PUM1-208	ENST00000471894	RSPH6A	Q9H0K4	717 aa		13.95	□□□□□ -0.18
PUM1-208	ENST00000471894	STRN4	Q9NRL3	753 aa		13.95	□□□□□ -0.18
PUM1-208	ENST00000471894	NLRP2	Q9NX02	1062 aa		13.95	□□□□□ -0.18
PUM1-208	ENST00000471894	CAMTA1	Q9Y6Y1	1673 aa		13.95	□□□□□ -0.18
PUM1-208	ENST00000471894	IGSF1	Q8N6C5	1336 aa		13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	SENP3-EIF4A1	A0A087X0R7	540 aa		13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	PRKAR2B	P31323	418 aa		13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	AEBP1	Q8IUX7	1158 aa		13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	USHBP1	Q8N6Y0	703 aa		13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	COL14A1	Q05707	1796 aa	Known RBP	13.94	□□□□□ -0.18
PUM1-208	ENST00000471894	MAPK8IP3	Q9UPT6	1336 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	APAF1	O14727	1248 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	MEX3C	Q5U5Q3	659 aa	Known RBP	13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	TOM1L2	Q6ZVM7	507 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	NGLY1	Q96IV0	654 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	PLEKHF1	Q96S99	279 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	RGPD2	P0DJD1	1756 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	RGPD1	P0DJD0	1748 aa		13.93	□□□□□ -0.18
PUM1-208	ENST00000471894	WDR17	Q8IZU2	1322 aa		13.92	□□□□□ -0.18
PUM1-208	ENST00000471894	LMO7	Q8WWI1	1683 aa		13.92	□□□□□ -0.18
PUM1-208	ENST00000471894	C8orf37	Q96NL8	207 aa		13.92	□□□□□ -0.18
PUM1-208	ENST00000471894	SALL2	Q9Y467	1007 aa	Predicted RBP	13.92	□□□□□ -0.18
PUM1-208	ENST00000471894	LARP1	Q6PKG0	1096 aa	Known RBP	13.91	□□□□□ -0.18
PUM1-208	ENST00000471894	TCP11L2	Q8N4U5	519 aa		13.91	□□□□□ -0.18
PUM1-208	ENST00000471894	COL5A2	P05997	1499 aa	Predicted RBP	13.91	□□□□□ -0.18
PUM1-208	ENST00000471894	MSH5	O43196	834 aa		13.9	□□□□□ -0.18
PUM1-208	ENST00000471894	NEUROD2	Q15784	382 aa		13.9	□□□□□ -0.18
PUM1-208	ENST00000471894	PHACTR3	Q96KR7	559 aa		13.9	□□□□□ -0.18
PUM1-208	ENST00000471894	KDR	P35968	1356 aa		13.9	□□□□□ -0.18
PUM1-208	ENST00000471894	CARD10	Q9BWT7	1032 aa		13.89	□□□□□ -0.19
PUM1-208	ENST00000471894	RRP7A	Q9Y3A4	280 aa	Known RBP	13.89	□□□□□ -0.19
PUM1-208	ENST00000471894	FAM208A	Q9UK61	1670 aa	Known RBP	13.88	□□□□□ -0.19
PUM1-208	ENST00000471894	TMPO	P42166	694 aa	Known RBP	13.88	□□□□□ -0.19
PUM1-208	ENST00000471894	RAPGEF4	Q8WZA2	1011 aa		13.88	□□□□□ -0.19
PUM1-208	ENST00000471894	LRP6	O75581	1613 aa		13.88	□□□□□ -0.19
PUM1-208	ENST00000471894	RIPK4	P57078	832 aa		13.87	□□□□□ -0.19
PUM1-208	ENST00000471894	UNC5CL	Q8IV45	518 aa		13.87	□□□□□ -0.19
PUM1-208	ENST00000471894	NGEF	Q8N5V2	710 aa		13.87	□□□□□ -0.19
PUM1-208	ENST00000471894	USP35	Q9P2H5	1018 aa		13.87	□□□□□ -0.19
PUM1-208	ENST00000471894	PLCH1	Q4KWH8	1693 aa		13.87	□□□□□ -0.19
PUM1-208	ENST00000471894	SLIT2	O94813	1529 aa		13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	TAT	P17735	454 aa	Predicted RBP	13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	NFE2L2	Q16236	605 aa		13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	CCDC9	Q9Y3X0	531 aa	Known RBP	13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	CRB1	P82279	1406 aa		13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	NCAPD2	Q15021	1401 aa		13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	ZBED9	Q6R2W3	1325 aa		13.86	□□□□□ -0.19
PUM1-208	ENST00000471894	NWD2	Q9ULI1	1742 aa		13.85	□□□□□ -0.19
PUM1-208	ENST00000471894	MTHFSD	Q2M296	383 aa	Known RBP	13.85	□□□□□ -0.19
PUM1-208	ENST00000471894	GAS2L2	Q8NHY3	880 aa		13.85	□□□□□ -0.19
PUM1-208	ENST00000471894	USP21	Q9UK80	565 aa		13.85	□□□□□ -0.19
PUM1-208	ENST00000471894	AMOT	Q4VCS5	1084 aa		13.84	□□□□□ -0.19
PUM1-208	ENST00000471894	NCBP3	Q53F19	620 aa	Known RBP	13.84	□□□□□ -0.19
PUM1-208	ENST00000471894	IL2RB	P14784	551 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms