RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 CCDC61Q9Y6R9 512 aa10.06□□□□□ -0.8
HDAC1-204ENST00000471488 PARP4Q9UKK3 1724 aaKnown RBP10.06□□□□□ -0.8
HDAC1-204ENST00000471488 CPDO75976 1380 aa10.05□□□□□ -0.8
HDAC1-204ENST00000471488 UTRNP46939 3433 aa10.04□□□□□ -0.8
HDAC1-204ENST00000471488 LRRC37A3O60309 1634 aa10.04□□□□□ -0.8
HDAC1-204ENST00000471488 LMO7Q8WWI1 1683 aa10.04□□□□□ -0.8
HDAC1-204ENST00000471488 CABP2Q9NPB3 220 aa10.04□□□□□ -0.8
HDAC1-204ENST00000471488 EXOC5O00471 708 aa10.03□□□□□ -0.8
HDAC1-204ENST00000471488 PPIP5K1Q6PFW1 1433 aa10.03□□□□□ -0.8
HDAC1-204ENST00000471488 CHD4Q14839 1912 aa10.03□□□□□ -0.8
HDAC1-204ENST00000471488 USP19O94966 1318 aa10.03□□□□□ -0.8
HDAC1-204ENST00000471488 SBF2Q86WG5 1849 aa10.03□□□□□ -0.8
HDAC1-204ENST00000471488 POLR3AO14802 1390 aaPredicted RBP10.02□□□□□ -0.8
HDAC1-204ENST00000471488 ARHGEF28Q8N1W1 1705 aaKnown RBP10.02□□□□□ -0.8
HDAC1-204ENST00000471488 PEAK1Q9H792 1746 aa10.02□□□□□ -0.8
HDAC1-204ENST00000471488 MSH5O43196 834 aa10.02□□□□□ -0.81
HDAC1-204ENST00000471488 RGPD3A6NKT7 1758 aaPredicted RBP10.01□□□□□ -0.81
HDAC1-204ENST00000471488 AKAP12Q02952 1782 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 RGPD4Q7Z3J3 1758 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 PLEKHG3A1L390 1219 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 POLD1P28340 1107 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 AXIN2Q9Y2T1 843 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 WDR17Q8IZU2 1322 aa10.01□□□□□ -0.81
HDAC1-204ENST00000471488 ZNF526Q8TF50 670 aaPredicted RBP10□□□□□ -0.81
HDAC1-204ENST00000471488 CDCA7Q9BWT1 371 aaPredicted RBP10□□□□□ -0.81
HDAC1-204ENST00000471488 CABP1Q9NZU7 370 aa10□□□□□ -0.81
HDAC1-204ENST00000471488 AATKQ6ZMQ8 1374 aa10□□□□□ -0.81
HDAC1-204ENST00000471488 TOPAZ1Q8N9V7 1692 aa9.99□□□□□ -0.81
HDAC1-204ENST00000471488 ZNF827Q17R98 1081 aa9.98□□□□□ -0.81
HDAC1-204ENST00000471488 SYTL4Q96C24 671 aaPredicted RBP9.98□□□□□ -0.81
HDAC1-204ENST00000471488 SGIP1Q9BQI5 828 aa9.98□□□□□ -0.81
HDAC1-204ENST00000471488 NLRP2Q9NX02 1062 aa9.98□□□□□ -0.81
HDAC1-204ENST00000471488 KCNQ4P56696 695 aa9.97□□□□□ -0.81
HDAC1-204ENST00000471488 NLGN2Q8NFZ4 835 aa9.97□□□□□ -0.81
HDAC1-204ENST00000471488 CARD10Q9BWT7 1032 aa9.97□□□□□ -0.81
HDAC1-204ENST00000471488 TFCP2L1Q9NZI6 479 aa9.97□□□□□ -0.81
HDAC1-204ENST00000471488 CPSF1Q10570 1443 aaKnown RBP9.97□□□□□ -0.81
HDAC1-204ENST00000471488 KAT6BQ8WYB5 2073 aa9.96□□□□□ -0.81
HDAC1-204ENST00000471488 WWC3Q9ULE0 1092 aa9.96□□□□□ -0.82
HDAC1-204ENST00000471488 CENPJQ9HC77 1338 aaPredicted RBP9.96□□□□□ -0.82
HDAC1-204ENST00000471488 BRD4O60885 1362 aaPredicted RBP9.96□□□□□ -0.82
HDAC1-204ENST00000471488 RAB3GAP2Q9H2M9 1393 aa9.96□□□□□ -0.82
HDAC1-204ENST00000471488 WNK3Q9BYP7 1800 aa9.96□□□□□ -0.82
HDAC1-204ENST00000471488 NBPF1Q3BBV0 1214 aa9.95□□□□□ -0.82
HDAC1-204ENST00000471488 KCNH5Q8NCM2 988 aa9.95□□□□□ -0.82
HDAC1-204ENST00000471488 DDX54Q8TDD1 881 aaKnown RBP9.95□□□□□ -0.82
HDAC1-204ENST00000471488 GPBP1L1Q9HC44 474 aaPredicted RBP9.95□□□□□ -0.82
HDAC1-204ENST00000471488 USP6P35125 1406 aa9.95□□□□□ -0.82
HDAC1-204ENST00000471488 RGPD5Q99666 1765 aa9.95□□□□□ -0.82
HDAC1-204ENST00000471488 MSL1Q68DK7 614 aa9.94□□□□□ -0.82
HDAC1-204ENST00000471488 ARHGEF25Q86VW2 580 aa9.94□□□□□ -0.82
HDAC1-204ENST00000471488 LRRC4BQ9NT99 713 aa9.94□□□□□ -0.82
HDAC1-204ENST00000471488 SLIT3O75094 1523 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 TNS2Q63HR2 1409 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 CCDC7Q96M83 1385 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 CEP350Q5VT06 3117 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 GRIN3BO60391 1043 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 YBX3P16989 372 aaKnown RBP eCLIP9.93□□□□□ -0.823e-6■■□□□ 14.4
HDAC1-204ENST00000471488 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.93□□□□□ -0.82
HDAC1-204ENST00000471488 STAC3Q96MF2 364 aa9.93□□□□□ -0.82
HDAC1-204ENST00000471488 ATP10DQ9P241 1426 aa9.92□□□□□ -0.82
HDAC1-204ENST00000471488 MAP3K5Q99683 1374 aa9.92□□□□□ -0.82
HDAC1-204ENST00000471488 IL2RBP14784 551 aa9.92□□□□□ -0.82
HDAC1-204ENST00000471488 LTV1Q96GA3 475 aaPredicted RBP9.92□□□□□ -0.82
HDAC1-204ENST00000471488 PIK3C2AO00443 1686 aa9.92□□□□□ -0.82
HDAC1-204ENST00000471488 NHSQ6T4R5 1651 aa9.92□□□□□ -0.82
HDAC1-204ENST00000471488 BCL9O00512 1426 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 COL18A1P39060 1754 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 SHANK3Q9BYB0 1731 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 PNPLA7Q6ZV29 1317 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 TTC21BQ7Z4L5 1316 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 QRICH2Q9H0J4 1663 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 SLC16A10Q8TF71 515 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 BTAF1O14981 1849 aa9.91□□□□□ -0.82
HDAC1-204ENST00000471488 GOLGB1Q14789 3259 aaKnown RBP9.9□□□□□ -0.82
HDAC1-204ENST00000471488 EVC2Q86UK5 1308 aa9.9□□□□□ -0.82
HDAC1-204ENST00000471488 CAPN15O75808 1086 aa9.9□□□□□ -0.82
HDAC1-204ENST00000471488 HSPA6P17066 643 aa9.9□□□□□ -0.82
HDAC1-204ENST00000471488 ANKRD24Q8TF21 1146 aa9.9□□□□□ -0.82
HDAC1-204ENST00000471488 AKT1S1Q96B36 256 aa9.9□□□□□ -0.82
HDAC1-204ENST00000471488 PAPPAQ13219 1627 aa9.89□□□□□ -0.83
HDAC1-204ENST00000471488 KTN1Q86UP2 1357 aaKnown RBP9.88□□□□□ -0.83
HDAC1-204ENST00000471488 PRIM1P49642 420 aaKnown RBP9.88□□□□□ -0.83
HDAC1-204ENST00000471488 SLC27A3Q5K4L6 730 aa9.88□□□□□ -0.83
HDAC1-204ENST00000471488 CCNL1Q9UK58 526 aaPredicted RBP9.88□□□□□ -0.83
HDAC1-204ENST00000471488 ABCC6O95255 1503 aa9.87□□□□□ -0.83
HDAC1-204ENST00000471488 TTC21AQ8NDW8 1320 aa9.87□□□□□ -0.83
HDAC1-204ENST00000471488 TMC1Q8TDI8 760 aa9.87□□□□□ -0.83
HDAC1-204ENST00000471488 ZNF692Q9BU19 519 aaPredicted RBP9.87□□□□□ -0.83
HDAC1-204ENST00000471488 ERBB3P21860 1342 aa9.86□□□□□ -0.83
HDAC1-204ENST00000471488 TRPM1Q7Z4N2 1603 aa9.86□□□□□ -0.83
HDAC1-204ENST00000471488 NME9Q86XW9 330 aa9.86□□□□□ -0.83
HDAC1-204ENST00000471488 COL23A1Q86Y22 540 aaPredicted RBP9.85□□□□□ -0.83
HDAC1-204ENST00000471488 NFAT5O94916 1531 aa9.84□□□□□ -0.83
HDAC1-204ENST00000471488 PHF14O94880 888 aa9.84□□□□□ -0.83
HDAC1-204ENST00000471488 KIAA1210Q9ULL0 1709 aa9.84□□□□□ -0.83
HDAC1-204ENST00000471488 TUBGCP6Q96RT7 1819 aa9.84□□□□□ -0.83
HDAC1-204ENST00000471488 USP47Q96K76 1375 aa9.83□□□□□ -0.84
HDAC1-204ENST00000471488 HDGFL2Q7Z4V5 671 aaPredicted RBP9.82□□□□□ -0.84
HDAC1-204ENST00000471488 LTN1O94822 1766 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms